Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414525.1_2020 15-10-27] 12,086 sequences; 74,456,230 total letters Query= NC_016762.1 Length=49135 Score E Sequences producing significant alignments: (Bits) Value seq7802 134 4e-27 seq4651 111 5e-20 seq9763 95.1 4e-15 >seq7802 Length=1410 Score = 134 bits (148), Expect = 4e-27 Identities = 161/218 (74%), Gaps = 3/218 (1%) Strand=Plus/Minus Query 21293 CTGGCGATGGAGCTTGGTATCCCCGTGATCGTGCTGTCGCAGCTCAACCGCTCCCTGGAG 21352 ||||| | ||| || | | || ||||| | ||||||||||||||||||||| ||||| Sbjct 982 CTGGCCAAGGAACTCAATGTGCCGGTGATTGCGCTGTCGCAGCTCAACCGCTCGCTGGAA 923 Query 21353 CAGCGGCCGAACAAGCGACCGATGATGTCGGACCTGCGCGAGTCCGGGGCGATCGAGCAG 21412 || | ||||||| ||| ||||| | ||| ||||||| ||||| || ||||||||| Sbjct 922 ACCCGTACCGACAAGCGCCCGGTGATGGCCGACTTGCGCGAATCCGGCGCAATCGAGCAG 863 Query 21413 GACGCCGATGTGATCATGTTCGTGTACCGCGACGAGGTCTACCACCCGG---ATACCCAG 21469 |||||||| ||||| | ||| | ||||||||||| |||| || || || | | | Sbjct 862 GACGCCGACATGATCGTCTTCATCTACCGCGACGATTACTACAACAAGGAAAATTCGCCG 803 Query 21470 TACCGCGGCGTGGCTGAGTTGATCATCGCGAAGCACCG 21507 | ||| |||| ||| | ||||||| |||||||| Sbjct 802 GATAAGGGCCTGGCCGAGATCATCATCGGCAAGCACCG 765 >seq4651 Length=2439 Score = 111 bits (122), Expect = 5e-20 Identities = 160/225 (71%), Gaps = 8/225 (4%) Strand=Plus/Minus Query 21294 TGGCGATGGAGCTTGGTATCCCCGTGATCGTGCTGTCGCAGCTCAACCGCTCCCTGGAGC 21353 |||||| ||||| | | | || |||| | | || ||| | ||||| |||| | Sbjct 1020 TGGCGAAAGAGCTGGATGTGCCACTGATTGCCATCTCACAGTTGAACCGAAGTGTGGATC 961 Query 21354 AGCGGCCGAACAAGCGACCGATGATGTCGGACCTGCGCGAGTCCGGGGCGATCGAGCAGG 21413 | ||||| ||||||| ||| ||||| ||| ||||||| || || ||||| || || | Sbjct 960 AACGGCCTGACAAGCGTCCGGTGATGAGTGACTTGCGCGAATCTGGCGCGATTGAACAAG 901 Query 21414 ACGCCGATGTGATCATGTTCGTGTACCGCGACGAGGTCTACCACCCGGATACCCAGTACC 21473 | |||||| ||||||||||||| ||||| |||||| |||| ||||||| |||| | Sbjct 900 ATGCCGATTTGATCATGTTCGTATACCGTGACGAGTACTACAACCCGGA----CAGTGCT 845 Query 21474 G----CGGCGTGGCTGAGTTGATCATCGCGAAGCACCGCAACGGC 21514 | || ||| ||| | || ||||| ||||| || |||||| Sbjct 844 GAAAAAGGGACGGCGGAGATCATTATCGCCAAGCAGCGTAACGGC 800 >seq9763 Length=1149 Score = 95.1 bits (104), Expect = 4e-15 Identities = 58/62 (94%), Gaps = 0/62 (0%) Strand=Plus/Plus Query 47536 ACAGGATTTAGGTTCCAGCGCCGCAAGGCGTGAGAGTTCGAGTCTCTCCGTCCGCACCAT 47595 || ||||||||||||||||||||| |||||||||||||||||||||||| | |||||||| Sbjct 645 ACTGGATTTAGGTTCCAGCGCCGCGAGGCGTGAGAGTTCGAGTCTCTCCTTTCGCACCAT 704 Query 47596 AC 47597 || Sbjct 705 AC 706 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 157087851319004