Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414525.1_2020 15-10-27] 12,086 sequences; 74,456,230 total letters Query= NC_016765.1 Length=54024 Score E Sequences producing significant alignments: (Bits) Value seq9763 89.7 2e-13 seq4651 82.4 3e-11 >seq9763 Length=1149 Score = 89.7 bits (98), Expect = 2e-13 Identities = 55/59 (93%), Gaps = 0/59 (0%) Strand=Plus/Plus Query 27080 ACAGGATTTAGGTTCCAGCGCCGCAAGGCGTGAGAGTTCGAGTCTCTCCGTCCGCACCA 27138 || ||||||||||||||||||||| |||||||||||||||||||||||| | ||||||| Sbjct 645 ACTGGATTTAGGTTCCAGCGCCGCGAGGCGTGAGAGTTCGAGTCTCTCCTTTCGCACCA 703 >seq4651 Length=2439 Score = 82.4 bits (90), Expect = 3e-11 Identities = 107/148 (72%), Gaps = 0/148 (0%) Strand=Plus/Minus Query 45531 TGCTTCCCCTCTGCCAGCTCAACCGAGGTTGCGAGTCTCGCCCCGACAAGCGTCCGGTCC 45590 || || || ||| ||| | |||||| || || || || |||||||||||||| Sbjct 996 TGATTGCCATCTCACAGTTGAACCGAAGTGTGGATCAACGGCCTGACAAGCGTCCGGTGA 937 Query 45591 TCAGCGACCTGCGCGAGTCCGGCGCCATTGAGCAAGACGCCGACATCGTCATGTTCGTGT 45650 | || ||| ||||||| || ||||| ||||| ||||| ||||| | |||||||||| | Sbjct 936 TGAGTGACTTGCGCGAATCTGGCGCGATTGAACAAGATGCCGATTTGATCATGTTCGTAT 877 Query 45651 ACCGCGATGAAGTCTATTTCCCGAACAG 45678 |||| || || ||| |||| |||| Sbjct 876 ACCGTGACGAGTACTACAACCCGGACAG 849 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 172730405957752