Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414525.1_2020 15-10-27] 12,086 sequences; 74,456,230 total letters Query= NC_016924.1 Length=185139 Score E Sequences producing significant alignments: (Bits) Value seq7203 208 9e-49 seq4369 134 2e-26 seq732 100 3e-16 >seq7203 Length=1522 Score = 208 bits (230), Expect = 9e-49 Identities = 553/825 (67%), Gaps = 35/825 (4%) Strand=Plus/Plus Query 36827 TTAAAAATCTTCATCTAACGTAAATTTTATTTCCTTATTACTATTCATAACTCCCATTTT 36886 |||||| |||||||| | || || |||| || || | |||||| ||| ||| Sbjct 616 TTAAAATTCTTCATCGAGCGAGAAAGACATTTGCTCTTTCTGAGACATAACACCCGCTTT 675 Query 36887 TTGATATTCTCCAACTCGTCTTTCGAAAAAATTTGTCTTTCCTTCTAGTGATATATTTTC 36946 ||| ||||| || || ||| ||||||| ||||| || || |||| || || || | || Sbjct 676 TTGGTATTCACCTACACGTTTTTCGAAGAAATTGGTTTTGCCTTGTAACGAAATCATATC 735 Query 36947 CATAAAATCAAATGGATTAGATGTATTATATATAGTACTACATGATAATTCCTTCAGAAG 37006 ||| ||||| || ||||| | | |||||| || || || | |||| | || ||| Sbjct 736 CATGAAATCGAAAGGATTGGTCGCATTATAAATTTTATTAACTCCTAATGATTCCAAAAG 795 Query 37007 CCTATCCGCAACAAATTCTATGTATTTACACATTAGTTCATAGTTTATACCAATTAGTTT 37066 ||| || ||||| || ||||||| ||||||||||| || || ||||| | Sbjct 796 GTGATCGGCCACAAACTCAATGTATTGGCACATTAGTTCGGCATTCATGCCAATCAACGA 855 Query 37067 TACTGGAATTGCATCTTGAAGAAATAGTTTTTCTATTATTACAGCATCTTTAACTATATT 37126 || || | ||||| | ||| |||||| ||| ||| |||||||| |||| Sbjct 856 AACAGGTAGCGCATCAGTTACGAATTCTTTTTCGATTTCTACTGCATCTTTCACTA---- 911 Query 37127 AACAATAACTTCTTCAGTTGGGGGATA----TTTTAAAT---ATT--TAAACAATAAACA 37177 || || || ||| | ||| ||| || | ||| ||| || | || ||||| Sbjct 912 AATCGTAGATT-TTCTG-AGGGTCATACTTGTTCTGAATGTAATTAGTATATAACAAACA 969 Query 37178 TGCAAAATCACAATGTAAACCTTCATCTCTACTTATCAATTCATTAGAAAAGGTTAATCC 37237 ||||| |||| ||||| |||||||| | | || || |||||||| || || | || Sbjct 970 GGCAAAGTCACGGTGTAAGCCTTCATCACGAGAAATTAACTCATTAGAGAATGTAAGACC 1029 Query 37238 TGGCATTAAACCTCtttttttAATCCAAAATATTGCTGCA-AAAGATCCAGAAAAGAAAA 37296 ||||||||||| | |||||| | ||| ||||| | ||| || || || || ||||||| Sbjct 1030 CGGCATTAAACCACGTTTTTTCAACCAGAATATCG-AGCAGAATGAGCCTGAGAAGAAAA 1088 Query 37297 TACCTTCAACTGCTGCAAATGCTACAAGACGTGTACCGAAAGTTGAACTATAATCAGAAA 37356 ||||||| || | |||||||||| || || || |||||| | | ||| || Sbjct 1089 TACCTTCTACAACGGCAAATGCTAACAGGCG-GTCAATAAAGTT--TCCGTTATC---AA 1142 Query 37357 TCCAtttttttGTCCAATCTGCCTTTAATTTAACACATTCAATTGTTTCAATTGCTTTTA 37416 |||| | |||||| || ||| || ||||| ||| || || || ||| Sbjct 1143 TCCAACGCAAAGCCCAATCGGCTTTTTTCTTTACACACGGAATATGGTCTATGGC-ATTA 1201 Query 37417 AGAGAAAGtttttttC-TTCACTA---TCTGTTATATAAGTATCAATTAGTAAACTA-TA 37471 || | ||| | || ||| | ||| | ||||||| |||||| || || | | || Sbjct 1202 AG---CATTTTATCTCGCTCAACAGGGTCTTTGATATAAGAATCAATCAG-AAGCGAGTA 1257 Query 37472 CATTTCAGAGTGAATATTTTCAATAGCTATCTGAAAACCATAAAAACACCTAGCTTCAGA 37531 |||| || ||||| ||||| || ||||| |||||||| ||||| | ||||| | Sbjct 1258 AGTTTCTGAATGAATGTTTTCCATCATAATCTGGAAACCATAGAAACATTTTGCTTCGGC 1317 Query 37532 TAATTGAACATCGTTA-AAAAACCTCTTAGCTAAGTTTTCATTAACTATCCCATCACTAG 37590 ||||| ||| || | | ||| | || |||||||||||||| || |||||| || Sbjct 1318 AAATTGTACA-CGAGAGATAAAATTGACTGCCAAGTTTTCATTAACGATACCATCAGAAG 1376 Query 37591 CTGCAAAGAAAGCAAGAACATATTTTATAAAATGTCTTTCATCAT 37635 | ||||| || || | |||| |||||||| | ||| ||| Sbjct 1377 CAGCAAAAAACGCCAATACATGAGAAATAAAATGACGCTCACCAT 1421 >seq4369 Length=2652 Score = 134 bits (148), Expect = 2e-26 Identities = 387/592 (65%), Gaps = 14/592 (2%) Strand=Plus/Minus Query 37178 TGCAAAATCACAATGTAAACCTTCATCTCTACTTATCAATTCATTAGAAAAGGTTAATCC 37237 ||||||||||||||||| ||||| || | | |||||||||||||| || || || || Sbjct 2618 TGCAAAATCACAATGTACGCCTTCGTCACGAGAAATCAATTCATTAGAGAAAGTCAAACC 2559 Query 37238 TGGCATTAAACCTCtttttttAATCCAAAATATTGCTGCAAAAGATCCAGAAAAGAAAAT 37297 |||||||||||| | |||||| | |||| | || | |||| || || ||||| || Sbjct 2558 TGGCATTAAACCACGTTTTTTCAACCAATAAATAGAACAGAAAGCACCTGAGAAGAATAT 2499 Query 37298 ACCTTCAACTGCTGCAAATGCTACAAGACGTGTACCGAAAGTTGAACTATAATCAGAAAT 37357 || || || || || || | ||||| | | || || || | || || Sbjct 2498 CCCCTCCACCGCCATGAAGGCAATGAGACGCTCAGCAAATGT---ACCCTCTTCT---AT 2445 Query 37358 CCAtttttttGTCCAATCTGCCTTTAATTTAACACATTC----AATTGTTTCAATTGCTT 37413 ||| || || ||| | ||| || || || || ||| || || | | || Sbjct 2444 CCACTTCAGTGCCCATTTTGCTTTC---TTCCCA-ATGGTGGGAATAGTATCTACAGATT 2389 Query 37414 TTAAGAGAAAGtttttttCTTCACTATCTGTTATATAAGTATCAATTAGTAAACTATACA 37473 || | | |||||| | ||| | ||||| |||||||| | | | || Sbjct 2388 GAAATAACTTGGCCTTTTCTACCGCATCATTAATATATGTATCAATCAAGAGAGAGTAAG 2329 Query 37474 TTTCAGAGTGAATATTTTCAATAGCTATCTGAAAACCATAAAAACACCTAGCTTCAGATA 37533 | |||| || || ||||| || |||||||| ||||| | ||| | || || | | Sbjct 2328 TCTCAGCATGTATGTTTTCCATCATGATCTGAAATCCATAGAGACAACGTGCCTCCGGCA 2269 Query 37534 ATTGAACATCGTTAAAAAACCTCTTAGCTAAGTTTTCATTAACTATCCCATCACTAGCTG 37593 || || || || | ||| || ||||| ||| ||||| ||||||||||| ||| | Sbjct 2268 CCTGCACCTCTTTCATAAAATTCACAGCTAGGTTCTCATTTACTATCCCATCCGCAGCCG 2209 Query 37594 CAAAGAAAGCAAGAACATATTTTATAAAATGTCTTTCATCATTTGATAATTTTTTCCAAT 37653 ||||||| || | || || || |||||||||||||||| || ||||||||| Sbjct 2208 CAAAGAACGCCAAAATATGCGAAATGAAATGTCTTTCATCATCATTTAGCCTTTTCCAAT 2149 Query 37654 CATTAATATCTTTTGATAAATCAACTTCATCAACGGTCCAAAAACTTGCCAATGCACGTT 37713 | || || | || ||||||| ||| ||| | |||||||| || || || Sbjct 2148 CCGCAAAGTCATCGGACAAATCAATTTCTTCAGCAGTCCAAAAGGACGCTTCAGCTTTTT 2089 Query 37714 TATACATCGTCCAAATATCATTATGTTGTATTGGAAATATTACAAATCTATC 37765 |||||| | ||| ||||||| ||| | || ||| ||| ||||| | ||| Sbjct 2088 TATACAACTGCCATATATCATCATGCTTGATGGGATATAGGACAAACCGATC 2037 >seq732 Length=22061 Score = 100 bits (110), Expect = 3e-16 Identities = 138/193 (72%), Gaps = 0/193 (0%) Strand=Plus/Plus Query 37440 TCTGTTATATAAGTATCAATTAGTAAACTATACATTTCAGAGTGAATATTTTCAATAGCT 37499 ||| | || || || ||||| || | ||| | ||| ||||| || |||||||| || Sbjct 9227 TCTTTAATGTACGTGTCAATGAGCAGCGAATAGACTTCCGAGTGGATGTTTTCAATCGCG 9286 Query 37500 ATCTGAAAACCATAAAAACACCTAGCTTCAGATAATTGAACATCGTTAAAAAACCTCTTA 37559 ||||| || |||||||| |||| |||||| | | ||| || || || ||| || | Sbjct 9287 ATCTGGAAGCCATAAAAGCACCGAGCTTCCGGCACTTGCACTTCATTGCTAAAGTTCATG 9346 Query 37560 GCTAAGTTTTCATTAACTATCCCATCACTAGCTGCAAAGAAAGCAAGAACATATTTTATA 37619 || | || || || || || |||||||| ||||||||||| || || |||| || ||| Sbjct 9347 GCCAGATTCTCGTTCACAATGCCATCACTGGCTGCAAAGAAGGCGAGCACATGCTTGATA 9406 Query 37620 AAATGTCTTTCAT 37632 || || | |||| Sbjct 9407 AAGTGACGCTCAT 9419 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 592227315739440