Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414525.1_2020
15-10-27] 12,086 sequences; 74,456,230 total letters
Query= NC_016924.1
Length=185139
Score E
Sequences producing significant alignments: (Bits) Value
seq7203 208 9e-49
seq4369 134 2e-26
seq732 100 3e-16
>seq7203
Length=1522
Score = 208 bits (230), Expect = 9e-49
Identities = 553/825 (67%), Gaps = 35/825 (4%)
Strand=Plus/Plus
Query 36827 TTAAAAATCTTCATCTAACGTAAATTTTATTTCCTTATTACTATTCATAACTCCCATTTT 36886
|||||| |||||||| | || || |||| || || | |||||| ||| |||
Sbjct 616 TTAAAATTCTTCATCGAGCGAGAAAGACATTTGCTCTTTCTGAGACATAACACCCGCTTT 675
Query 36887 TTGATATTCTCCAACTCGTCTTTCGAAAAAATTTGTCTTTCCTTCTAGTGATATATTTTC 36946
||| ||||| || || ||| ||||||| ||||| || || |||| || || || | ||
Sbjct 676 TTGGTATTCACCTACACGTTTTTCGAAGAAATTGGTTTTGCCTTGTAACGAAATCATATC 735
Query 36947 CATAAAATCAAATGGATTAGATGTATTATATATAGTACTACATGATAATTCCTTCAGAAG 37006
||| ||||| || ||||| | | |||||| || || || | |||| | || |||
Sbjct 736 CATGAAATCGAAAGGATTGGTCGCATTATAAATTTTATTAACTCCTAATGATTCCAAAAG 795
Query 37007 CCTATCCGCAACAAATTCTATGTATTTACACATTAGTTCATAGTTTATACCAATTAGTTT 37066
||| || ||||| || ||||||| ||||||||||| || || ||||| |
Sbjct 796 GTGATCGGCCACAAACTCAATGTATTGGCACATTAGTTCGGCATTCATGCCAATCAACGA 855
Query 37067 TACTGGAATTGCATCTTGAAGAAATAGTTTTTCTATTATTACAGCATCTTTAACTATATT 37126
|| || | ||||| | ||| |||||| ||| ||| |||||||| ||||
Sbjct 856 AACAGGTAGCGCATCAGTTACGAATTCTTTTTCGATTTCTACTGCATCTTTCACTA---- 911
Query 37127 AACAATAACTTCTTCAGTTGGGGGATA----TTTTAAAT---ATT--TAAACAATAAACA 37177
|| || || ||| | ||| ||| || | ||| ||| || | || |||||
Sbjct 912 AATCGTAGATT-TTCTG-AGGGTCATACTTGTTCTGAATGTAATTAGTATATAACAAACA 969
Query 37178 TGCAAAATCACAATGTAAACCTTCATCTCTACTTATCAATTCATTAGAAAAGGTTAATCC 37237
||||| |||| ||||| |||||||| | | || || |||||||| || || | ||
Sbjct 970 GGCAAAGTCACGGTGTAAGCCTTCATCACGAGAAATTAACTCATTAGAGAATGTAAGACC 1029
Query 37238 TGGCATTAAACCTCtttttttAATCCAAAATATTGCTGCA-AAAGATCCAGAAAAGAAAA 37296
||||||||||| | |||||| | ||| ||||| | ||| || || || || |||||||
Sbjct 1030 CGGCATTAAACCACGTTTTTTCAACCAGAATATCG-AGCAGAATGAGCCTGAGAAGAAAA 1088
Query 37297 TACCTTCAACTGCTGCAAATGCTACAAGACGTGTACCGAAAGTTGAACTATAATCAGAAA 37356
||||||| || | |||||||||| || || || |||||| | | ||| ||
Sbjct 1089 TACCTTCTACAACGGCAAATGCTAACAGGCG-GTCAATAAAGTT--TCCGTTATC---AA 1142
Query 37357 TCCAtttttttGTCCAATCTGCCTTTAATTTAACACATTCAATTGTTTCAATTGCTTTTA 37416
|||| | |||||| || ||| || ||||| ||| || || || |||
Sbjct 1143 TCCAACGCAAAGCCCAATCGGCTTTTTTCTTTACACACGGAATATGGTCTATGGC-ATTA 1201
Query 37417 AGAGAAAGtttttttC-TTCACTA---TCTGTTATATAAGTATCAATTAGTAAACTA-TA 37471
|| | ||| | || ||| | ||| | ||||||| |||||| || || | | ||
Sbjct 1202 AG---CATTTTATCTCGCTCAACAGGGTCTTTGATATAAGAATCAATCAG-AAGCGAGTA 1257
Query 37472 CATTTCAGAGTGAATATTTTCAATAGCTATCTGAAAACCATAAAAACACCTAGCTTCAGA 37531
|||| || ||||| ||||| || ||||| |||||||| ||||| | ||||| |
Sbjct 1258 AGTTTCTGAATGAATGTTTTCCATCATAATCTGGAAACCATAGAAACATTTTGCTTCGGC 1317
Query 37532 TAATTGAACATCGTTA-AAAAACCTCTTAGCTAAGTTTTCATTAACTATCCCATCACTAG 37590
||||| ||| || | | ||| | || |||||||||||||| || |||||| ||
Sbjct 1318 AAATTGTACA-CGAGAGATAAAATTGACTGCCAAGTTTTCATTAACGATACCATCAGAAG 1376
Query 37591 CTGCAAAGAAAGCAAGAACATATTTTATAAAATGTCTTTCATCAT 37635
| ||||| || || | |||| |||||||| | ||| |||
Sbjct 1377 CAGCAAAAAACGCCAATACATGAGAAATAAAATGACGCTCACCAT 1421
>seq4369
Length=2652
Score = 134 bits (148), Expect = 2e-26
Identities = 387/592 (65%), Gaps = 14/592 (2%)
Strand=Plus/Minus
Query 37178 TGCAAAATCACAATGTAAACCTTCATCTCTACTTATCAATTCATTAGAAAAGGTTAATCC 37237
||||||||||||||||| ||||| || | | |||||||||||||| || || || ||
Sbjct 2618 TGCAAAATCACAATGTACGCCTTCGTCACGAGAAATCAATTCATTAGAGAAAGTCAAACC 2559
Query 37238 TGGCATTAAACCTCtttttttAATCCAAAATATTGCTGCAAAAGATCCAGAAAAGAAAAT 37297
|||||||||||| | |||||| | |||| | || | |||| || || ||||| ||
Sbjct 2558 TGGCATTAAACCACGTTTTTTCAACCAATAAATAGAACAGAAAGCACCTGAGAAGAATAT 2499
Query 37298 ACCTTCAACTGCTGCAAATGCTACAAGACGTGTACCGAAAGTTGAACTATAATCAGAAAT 37357
|| || || || || || | ||||| | | || || || | || ||
Sbjct 2498 CCCCTCCACCGCCATGAAGGCAATGAGACGCTCAGCAAATGT---ACCCTCTTCT---AT 2445
Query 37358 CCAtttttttGTCCAATCTGCCTTTAATTTAACACATTC----AATTGTTTCAATTGCTT 37413
||| || || ||| | ||| || || || || ||| || || | | ||
Sbjct 2444 CCACTTCAGTGCCCATTTTGCTTTC---TTCCCA-ATGGTGGGAATAGTATCTACAGATT 2389
Query 37414 TTAAGAGAAAGtttttttCTTCACTATCTGTTATATAAGTATCAATTAGTAAACTATACA 37473
|| | | |||||| | ||| | ||||| |||||||| | | | ||
Sbjct 2388 GAAATAACTTGGCCTTTTCTACCGCATCATTAATATATGTATCAATCAAGAGAGAGTAAG 2329
Query 37474 TTTCAGAGTGAATATTTTCAATAGCTATCTGAAAACCATAAAAACACCTAGCTTCAGATA 37533
| |||| || || ||||| || |||||||| ||||| | ||| | || || | |
Sbjct 2328 TCTCAGCATGTATGTTTTCCATCATGATCTGAAATCCATAGAGACAACGTGCCTCCGGCA 2269
Query 37534 ATTGAACATCGTTAAAAAACCTCTTAGCTAAGTTTTCATTAACTATCCCATCACTAGCTG 37593
|| || || || | ||| || ||||| ||| ||||| ||||||||||| ||| |
Sbjct 2268 CCTGCACCTCTTTCATAAAATTCACAGCTAGGTTCTCATTTACTATCCCATCCGCAGCCG 2209
Query 37594 CAAAGAAAGCAAGAACATATTTTATAAAATGTCTTTCATCATTTGATAATTTTTTCCAAT 37653
||||||| || | || || || |||||||||||||||| || |||||||||
Sbjct 2208 CAAAGAACGCCAAAATATGCGAAATGAAATGTCTTTCATCATCATTTAGCCTTTTCCAAT 2149
Query 37654 CATTAATATCTTTTGATAAATCAACTTCATCAACGGTCCAAAAACTTGCCAATGCACGTT 37713
| || || | || ||||||| ||| ||| | |||||||| || || ||
Sbjct 2148 CCGCAAAGTCATCGGACAAATCAATTTCTTCAGCAGTCCAAAAGGACGCTTCAGCTTTTT 2089
Query 37714 TATACATCGTCCAAATATCATTATGTTGTATTGGAAATATTACAAATCTATC 37765
|||||| | ||| ||||||| ||| | || ||| ||| ||||| | |||
Sbjct 2088 TATACAACTGCCATATATCATCATGCTTGATGGGATATAGGACAAACCGATC 2037
>seq732
Length=22061
Score = 100 bits (110), Expect = 3e-16
Identities = 138/193 (72%), Gaps = 0/193 (0%)
Strand=Plus/Plus
Query 37440 TCTGTTATATAAGTATCAATTAGTAAACTATACATTTCAGAGTGAATATTTTCAATAGCT 37499
||| | || || || ||||| || | ||| | ||| ||||| || |||||||| ||
Sbjct 9227 TCTTTAATGTACGTGTCAATGAGCAGCGAATAGACTTCCGAGTGGATGTTTTCAATCGCG 9286
Query 37500 ATCTGAAAACCATAAAAACACCTAGCTTCAGATAATTGAACATCGTTAAAAAACCTCTTA 37559
||||| || |||||||| |||| |||||| | | ||| || || || ||| || |
Sbjct 9287 ATCTGGAAGCCATAAAAGCACCGAGCTTCCGGCACTTGCACTTCATTGCTAAAGTTCATG 9346
Query 37560 GCTAAGTTTTCATTAACTATCCCATCACTAGCTGCAAAGAAAGCAAGAACATATTTTATA 37619
|| | || || || || || |||||||| ||||||||||| || || |||| || |||
Sbjct 9347 GCCAGATTCTCGTTCACAATGCCATCACTGGCTGCAAAGAAGGCGAGCACATGCTTGATA 9406
Query 37620 AAATGTCTTTCAT 37632
|| || | ||||
Sbjct 9407 AAGTGACGCTCAT 9419
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 592227315739440
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |