Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414525.1_2020
15-10-27] 12,086 sequences; 74,456,230 total letters
Query= NC_017940.1
Length=127732
Score E
Sequences producing significant alignments: (Bits) Value
seq413 188 6e-43
>seq413
Length=60602
Score = 188 bits (208), Expect = 6e-43
Identities = 449/664 (68%), Gaps = 25/664 (4%)
Strand=Plus/Plus
Query 29803 AGCGGTTCCACGTGATCCAGGTAGACGTGAGCGTCTCCCAGGGTGTGGACAAACTCTCCC 29862
|||||||||||||| | ||| || || || ||||| || | | || | |||||| ||
Sbjct 13921 AGCGGTTCCACGTGGTTCAGATACACATGCGCGTCACCAATGACATGAATAAACTCGCCG 13980
Query 29863 GGTTCTAGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTA 29922
|||| | || | || || |||| | | ||| || || | |||||||||||| ||
Sbjct 13981 GGTTTCAAACCTGCCACCTGTGCCACTAAGCGCGTTAGCAGCGCGTAGCTGGCGATATTG 14040
Query 29923 AAGGGTACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCG 29982
|| || || |||||||||||||| | || | |||||| | ||| ||||| | ||| |||
Sbjct 14041 AATGGGACGCCGAGCCCCATGTCAGCTGAGCGCTGGTACATCTGGCACGACAACTCACCG 14100
Query 29983 TC-GCTCACGTAAAACTGACACATGGTGTGGCACGGAGGAAGAGCCATGAGGCCCAAGTC 30041
|| ||| |||||||||||||| | |||||||||| || || |||||| | ||
Sbjct 14101 TCAGCT-ACGTAAAACTGACAGAACATGTGGCACGGCGGCAGCGCCATGTCATTAAGATC 14159
Query 30042 TTTGGGGTTCCAGGCGCACACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGA---TGAG 30098
|| |||||||| ||| | ||| || | || ||||| ||| || || |
Sbjct 14160 AGCCGGATTCCAGGCCGACAGCACGATACGGCGATCAGAAGGGTTTGTCCGGAGTTTGTG 14219
Query 30099 GTCCACGGCGTTTTGC-AGCTGATCCACCCCCATCCCCGAGTAGTCTGCCCTCATGTCCG 30157
||| | || ||||| ||||| || || | ||||| || |||||| |
Sbjct 14220 TATCAC----CTCAGCGAGCTGGTCCACGCCTTGGCCTGTATAGTCGGCATGCATGTCGG 14275
Query 30158 TGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTT 30217
|||||| ||| |||||||| | ||||||||| || || || ||||| |||||||| | |
Sbjct 14276 TGTACTTTGCACCGAAATGACGCCACTGGAAACCATATACTGGTCCAAGGTCTCCTACCT 14335
Query 30218 CCCTGTG-CTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATC 30276
||| ||| || ||||| || |||||| | || | || || || ||||||||||
Sbjct 14336 CCC-GTGACTGTAAGCCTCTACTGTCCAGGTACTCACGCGATCCATTACCGTCCCAGATA 14394
Query 30277 TTTACCCCCTTCTCGGAGAGC-TCTTTGGAGT-TTGTGGACCCTCTGACGAACCACAGCA 30334
|| || || | ||| | | || | | ||| ||||| | | |||||||||||
Sbjct 14395 CGGACACCTTTTTGCTGTAGCGTGTGTGCACTCGTGT-CACCCT-TAATGAACCACAGCA 14452
Query 30335 GCTCCTCCACGACGGCCTTCCAAAAGACCCTCTTGGTCGTGAGGAGGGGAAAC----TGT 30390
||||||| | || | ||| || || | ||| ||||| || | |||||| |||
Sbjct 14453 GCTCCTCAGCCACACCTCGCCAGAACACGCGCTTCGTCGTCAGCAACGGAAACGCGTTGT 14512
Query 30391 CCCTTGAGGCCGTACATGGC--CTGAGAACCAAACACGGACAAGACTCCCGTGCCCGTCC 30448
||| | || || || ||| | |||||||| ||||| |||||||| || |
Sbjct 14513 TCCTCAA---ACTAAATCGCATCTGCGCTCCAAACACTGACAACGTCCCCGTGCCGGTTC 14569
Query 30449 TGTC 30452
|||
Sbjct 14570 GGTC 14573
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 408557411393678
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |