Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414525.1_2020 15-10-27] 12,086 sequences; 74,456,230 total letters Query= NC_017972.1 Length=280538 Score E Sequences producing significant alignments: (Bits) Value seq2394 170 3e-37 seq11031 147 4e-30 >seq2394 Length=6285 Score = 170 bits (188), Expect = 3e-37 Identities = 272/385 (71%), Gaps = 8/385 (2%) Strand=Plus/Minus Query 22968 TTCGCACTCTTCATCAGATTCAAAGAACAGAATTTGTGCGCAACCTTCGCCAGCGTAGAT 23027 |||||| ||||||| |||||||||||||| | ||| ||||| ||||| || || || || Sbjct 4209 TTCGCAGACTTCATCTGATTCAAAGAACAGCACTTGGGCGCAGCCTTCACCGGCATAAAT 4150 Query 23028 CAGTGCCGGGCTTGGTGTGGTATTGGAAAACTCCAGAGTAAGCGAGCCTTTCCATTCTGG 23087 | || || |||||| |||||| |||||||| || | |||||| ||| || || Sbjct 4149 CTTGGCTGGCAGTGGTGTAGTATTGCTGAACTCCAGTGTGACATAGCCTTCCCACTCAGG 4090 Query 23088 TTCCAGCGGCGTGACGTTTACGATGATGCCGCAACGCGCATACGTCGATTTGCCGAGGCA 23147 ||| | |||||||| || ||||||||||||||||||||||| || ||||| || ||||| Sbjct 4089 TTCAAATGGCGTGACATTGACGATGATGCCGCAACGCGCATAAGTGGATTTACCCAGGCA 4030 Query 23148 GATAACTAATACGTCACGCGGAATGTTGAAGTGTTCCGGCGTGTTTGCCAGTGCGAAACT 23207 ||| | || || |||||| ||| | ||| |||| |||| ||||||| Sbjct 4029 AATAGTGAGCACCGAGCGGGGAATGCGGAAATATTCAACCGTGCGCGCCAATGCGAAAGA 3970 Query 23208 GTTCGGCGGAATGATCAGGCCTTGGCCGTTTGGAACGTGCTTCGTAACGAAATTGTCTTC 23267 ||| |||||| |||| || | ||| |||| ||||| || |||| | Sbjct 3969 GTTGGGCGGA---ATCACGCAATAGCC-TTTGCCGGAGACTTCG--AC-AAATGATTGCG 3917 Query 23268 GGT-GAAATTCTTTGGATCGACAACCGCGTTATTCAGGTTGGTGAAAACCTTGAATTCGT 23326 ||| ||| | || || ||||||| | | | || | |||||||| || |||||||| Sbjct 3916 GGTCGAACTGTTTCGGGTCGACAATGGTGCTGTTGATATTGGTGAACACACGGAATTCGT 3857 Query 23327 TACCGCAACGAATATCGTAGCCGTA 23351 |||| || |||||||| || || Sbjct 3856 CGGCGCAGCGGATATCGTAACCATA 3832 >seq11031 Length=1032 Score = 147 bits (162), Expect = 4e-30 Identities = 261/378 (69%), Gaps = 11/378 (3%) Strand=Plus/Plus Query 22950 GCGGTCGGCGTAGGAAACTTCGCACTCTTCATCAGATTCAAAGAACAGAATTTGTGCGCA 23009 |||||| ||| || ||||||| |||| || |||| || |||| || || || Sbjct 464 GCGGTCCTTGTACGAGGTTTCGCACACTTCGTCGGATTGGAAAAACAACATCTGCGCCAC 523 Query 23010 ACCTTCGCCAGCGTAGATCAGTGCCGGGCTTGGTGTGGTATTGGAAAACTCCAGAGTAAG 23069 |||||| || ||||| | ||||| || ||||| ||| || ||||| || | Sbjct 524 GCCTTCGTTGGCATAGATGCGCGCCGGCAGCGGCGTGGTGTTGCTGAATTCCAGGGTCAC 583 Query 23070 CGAGCCTTTCCATTCTGGTTCCAGCGGCGTGACGTTTACGATGATGCCGCAACGCGCATA 23129 ||||| ||| || || |||||||| |||||||| |||||||||||||| ||||| || Sbjct 584 GTGGCCTTCCCACTCCGGCTCCAGCGGGGTGACGTTGACGATGATGCCGCAGCGCGCGTA 643 Query 23130 CGTCGATTTGCCGAGGCAGATAACTAATACGTCACGCGGAATGTTGAAGTGTTCCGGCGT 23189 || ||||| ||||| | || || || ||||| ||| ||| | |||| ||| Sbjct 644 GGTGCTCTTGCCCAGGCACACCACCAACGTATCGCGCGGGATGCGGAAATATTCCACCGT 703 Query 23190 GTTTGCCAGTGCGAAACTGTTCGGCGGAATGAT-CAGGCCTTGGCCGTTTGGAACGTGCT 23248 | |||||| || |||||||||||||| ||||| ||| | | ||| || || | Sbjct 704 GCGTGCCAGCGCAAAACTGTTCGGCGGGATGATGCAGACAT---CCGATTCGA-----CA 755 Query 23249 TCGTAACGAAATTGTCTTCGGTGAAATTCTTTGGATCGACAACCGCGTTATTCAGGTTGG 23308 ||| || || || || | ||||| ||| || ||||||| | || | ||||| Sbjct 756 TCG--ACAAAGCTGCCTGGGTCGAAATGCTTGGGGTCGACAATGGTCGAGTTGATGTTGG 813 Query 23309 TGAAAACCTTGAATTCGT 23326 |||||| |||||| |||| Sbjct 814 TGAAAATCTTGAACTCGT 831 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 897457996046880