Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414525.1_2020
15-10-27] 12,086 sequences; 74,456,230 total letters
Query= NC_017974.1
Length=149273
Score E
Sequences producing significant alignments: (Bits) Value
seq5177 232 6e-56
seq7821 203 3e-47
>seq5177
Length=2144
Score = 232 bits (256), Expect = 6e-56
Identities = 278/378 (74%), Gaps = 0/378 (0%)
Strand=Plus/Minus
Query 118114 CATGATGTCGTCAAAGACGATCGACGGATCTGCCAGGATGTTACGGATGATATGGGTGTA 118173
|| |||||| ||||| | ||| || ||||| | |||||| |||||||||||||||||
Sbjct 387 CACGATGTCATCAAAAATGATGGAGGGATCATTGACGATGTTGCGGATGATATGGGTGTA 328
Query 118174 TGAGCGAGAGTGGATAGTCTCACTGAACGCCCAAGTCTCGACCCATGTTTCCAGGGTTGT 118233
||||| ||||| || ||||| |||||||| || || | ||| ||||| | |
Sbjct 327 CGAGCGCGAGTGTATGGTCTCGGAAAACGCCCAGGTTTCTATCCAGGTTTCAATCTCAGG 268
Query 118234 GTCGGACACGATCGGGAGCAGAACTGCATTCGGCCCACGGCCCTGTACAGAATCCAGAAG 118293
||||| | ||| |||| | | | || || | ||||||||| | |||||||| ||
Sbjct 267 CAATGACACCAGCGGTAGCAAAGCCACGTTAGGGCTACGGCCCTGGATGGAATCCAGCAG 208
Query 118294 GATCTGGTACTTCAGGTTGCTGATGAAGATGTGCTTCTCGTGATCCGGCAGATTCATGTA 118353
|||||||||| ||||||||||||||||||||||| || || || ||||| | ||
Sbjct 207 CGTCTGGTACTTAAGGTTGCTGATGAAGATGTGCTTTTCATGCTCGGGCAGGCCCTGATA 148
Query 118354 GTCGATACGGTCACGGGTCACGTTAACTTCTTCCGGACGCCAGAAGAACGCCAGTTGCTT 118413
|| |||||| | | ||| | || |||||||||||||||||||| | |||||| ||
Sbjct 147 ATCAGAACGGTCCTGTGACACATCCACCTCTTCCGGACGCCAGAAGAATGACAGTTGTTT 88
Query 118414 CTCGATCAGCTTCTCGAACTTGGCGTGTTTCTGCTGGTCATAGCGAGAAACGTTCGGTGT 118473
||||||||| || ||||| | || ||||||||||||||| || | ||||| |
Sbjct 87 CTCGATCAGTTTTTCGAATACCGGGTATTTCTGCTGGTCATACCGCGCCACGTTGACGGG 28
Query 118474 CTCGCCGAGGAACATCGG 118491
|| || | |||||||||
Sbjct 27 CTGACCAAAGAACATCGG 10
Score = 136 bits (150), Expect = 4e-27
Identities = 116/143 (81%), Gaps = 0/143 (0%)
Strand=Plus/Minus
Query 117821 TTCAGCATATACTGAGTGCCGGACAAATGCAAGGCTTCATCACGGGCAATCAGTTCAATA 117880
|| ||||| | ||| ||||||| || |||| |||||||||||| |||||||| ||
Sbjct 713 TTGAGCATGTGCTGGGTGCCGGTCAGGTGCAGGGCTTCATCACGCGCAATCAGGCGGATG 654
Query 117881 ATGTTGGTGTTGCCCAGCATTACCCCGCGCTCGCCGAACGCAAATGAGCAGGCGAAGCTC 117940
|| |||| |||||| ||| ||| ||||||| | || || |||||||||||||||||
Sbjct 653 ATCTTGGCGTTGCCTTCCATCACCTTGCGCTCGGCAAAGGCGAATGAGCAGGCGAAGCTG 594
Query 117941 ACGTAGAAGCGGATCGCTTCCAG 117963
|||||||||||||||||||||||
Sbjct 593 ACGTAGAAGCGGATCGCTTCCAG 571
>seq7821
Length=1406
Score = 203 bits (224), Expect = 3e-47
Identities = 510/765 (67%), Gaps = 29/765 (4%)
Strand=Plus/Plus
Query 119118 GCAGCATACCCGCTCCGGATTTCTTGAAGGAAATCGCATCACGAGGTGGCTCAAAACCAT 119177
|||| ||||| || ||||| ||||| ||| | | | || ||||| |||| |||||
Sbjct 648 GCAGGATACCGTCTTTGGATTGCTTGACGGATACCAGGCCGCGCGGTGGTTCAATACCAT 707
Query 119178 TCGTGGAGTTAGTGATCTGGCTGGATGTCTCGCAAGGCATCATCGTGGACAGCGTGGAGT 119237
| |||| ||| | |||||||||||| || || | ||||| | || | ||| |||||||
Sbjct 708 TGGTGGCGTTGGCGATCTGGCTGGAGGTTTCTGATGGCATTAACGCAGTCAGGGTGGAGT 767
Query 119238 TACGCAGGCCATGAATCGCGATATCGACACGCAGCTTTTCCCAGTCCATCTTCAGTTCCG 119297
| |||||||||| | || ||| |||||| ||||||| |||| | || | |
Sbjct 768 TGCGCAGGCCATCTTTTTGAATCTCGGTACGCAGGCTTTCCCAATCCAGCAGCAATGGCT 827
Query 119298 CAGTGTGGAGAGCATCCACCTCTTTTTTGTAACGGTCGATCGGCAGAATGCCCTGAGAGT 119357
| || | ||||||| || ||||| || || |||||||| || || | | ||
Sbjct 828 CGCTGCAAACGGCATCCAGATCCTTTTTATAGGTATCAATCGGCAGGATACCTTTGGCGT 887
Query 119358 AAGTTGTCTCGTGGAAGAGATCACATTTGCCCAGTTCTTTTGCCAGGTCAACCGACGCTT 119417
|||| || || ||||| | ||| ||| | || | ||| | ||||| || |
Sbjct 888 AAGTGGTTTCCTGGAACGCGCCGCATGGGCCAAACTCACGCGACAGTTGTACCGAAGCCT 947
Query 119418 CCAGTAGGTAATACTGGAATGCTTCAGCCAGTTCGTGAACAGCGTTAGCTGCACGAGGGT 119477
|| ||||| |||||| |||||| || ||| ||||||| || | | | |
Sbjct 948 TGAGCAGGTAGAACTGGATCGCTTCAA--AG---GTGCGGTGCGTTAG--GCCCAACGCT 1000
Query 119478 ----CGCTG---TACTTCATCCCGCGCTTCGCCAGGTAGTACGCGAGGTTGGTCCAGCCA 119530
||||| || || | ||| ||||||||||| |||||| |||| | |||
Sbjct 1001 TCATCGCTGGTGTAGTTAGTGCCGTTTTTCGCCAGGTAATACGCGTAGTTGATTACGCCT 1060
Query 119531 ATCCCCAGTGTACGGCGCAGCTTGGTCTT-CTCTGCC--GCCAGAACCGGGTAGTTCTGA 119587
| ||||||| |||||| | ||| ||| || || |||||||| | ||||
Sbjct 1061 ACGCCCAGTGAACGGCGTTTGTCGGTGGCACTCAGCGCGGCTTTTACCGGGTAATCCTGA 1120
Query 119588 TAGTCCAGCAGTCGGTCCAGAGCACGAACCAGT-GTACGGACAGGCTCACGCATGTCTTC 119646
|| || ||||| ||||| ||||| |||| | ||| ||||| | || || ||
Sbjct 1121 TACTCGAGCAGCGCATCCAGTGCACGCACCACCAGGTCGGCCAGGCCTTC-CAGTTCGTC 1179
Query 119647 CAGCTTCTCGATCTTGCCAAGGTTAATGGCAGACAGAGTACACAGGGCTACCTCGCCCGG 119706
||| ||| | | || ||||| | ||| || | ||||| || || | ||||||
Sbjct 1180 CAGTGACTCCAGCGCACCCAGGTTGAAGGCGGATAAGGTACAAAGCGCGATTTCGCCC-- 1237
Query 119707 GTCTTCTGGATCGTTAATGTCGTTGATCGGATGCGTCGGCAGCGCGATCTCCATACACAG 119766
|| | |||||||||||| || | | | |||||||||||||||||||| |||||
Sbjct 1238 ----TCGGTATCGTTAATGTCATTCAGGGCGTTGGTCGGCAGCGCGATCTCCATGCACAG 1293
Query 119767 GTTGGACTGCTTCACCGGGGC--CTGTTTAGGGTCAAACGGGCTGTTGGTATTACAGTGG 119824
|||||| || ||| || || | | | || ||||||||||||| || || || |||
Sbjct 1294 GTTGGATTGACGCACTGGCGCAACAGCT--GGATCAAACGGGCTGTGCGTGTTGCAATGG 1351
Query 119825 TCAACGTGCTGAACATAAATACGACCAGTTTGTGAACGCTCCTGC 119869
|| |||| ||| | || ||||| ||||| | ||| ||||||
Sbjct 1352 TCTACGTTCTGGATGTAGATACGGCCAGTACCGGCACGTTCCTGC 1396
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 477473454798480
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |