Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414525.1_2020 15-10-27] 12,086 sequences; 74,456,230 total letters Query= NC_017974.1 Length=149273 Score E Sequences producing significant alignments: (Bits) Value seq5177 232 6e-56 seq7821 203 3e-47 >seq5177 Length=2144 Score = 232 bits (256), Expect = 6e-56 Identities = 278/378 (74%), Gaps = 0/378 (0%) Strand=Plus/Minus Query 118114 CATGATGTCGTCAAAGACGATCGACGGATCTGCCAGGATGTTACGGATGATATGGGTGTA 118173 || |||||| ||||| | ||| || ||||| | |||||| ||||||||||||||||| Sbjct 387 CACGATGTCATCAAAAATGATGGAGGGATCATTGACGATGTTGCGGATGATATGGGTGTA 328 Query 118174 TGAGCGAGAGTGGATAGTCTCACTGAACGCCCAAGTCTCGACCCATGTTTCCAGGGTTGT 118233 ||||| ||||| || ||||| |||||||| || || | ||| ||||| | | Sbjct 327 CGAGCGCGAGTGTATGGTCTCGGAAAACGCCCAGGTTTCTATCCAGGTTTCAATCTCAGG 268 Query 118234 GTCGGACACGATCGGGAGCAGAACTGCATTCGGCCCACGGCCCTGTACAGAATCCAGAAG 118293 ||||| | ||| |||| | | | || || | ||||||||| | |||||||| || Sbjct 267 CAATGACACCAGCGGTAGCAAAGCCACGTTAGGGCTACGGCCCTGGATGGAATCCAGCAG 208 Query 118294 GATCTGGTACTTCAGGTTGCTGATGAAGATGTGCTTCTCGTGATCCGGCAGATTCATGTA 118353 |||||||||| ||||||||||||||||||||||| || || || ||||| | || Sbjct 207 CGTCTGGTACTTAAGGTTGCTGATGAAGATGTGCTTTTCATGCTCGGGCAGGCCCTGATA 148 Query 118354 GTCGATACGGTCACGGGTCACGTTAACTTCTTCCGGACGCCAGAAGAACGCCAGTTGCTT 118413 || |||||| | | ||| | || |||||||||||||||||||| | |||||| || Sbjct 147 ATCAGAACGGTCCTGTGACACATCCACCTCTTCCGGACGCCAGAAGAATGACAGTTGTTT 88 Query 118414 CTCGATCAGCTTCTCGAACTTGGCGTGTTTCTGCTGGTCATAGCGAGAAACGTTCGGTGT 118473 ||||||||| || ||||| | || ||||||||||||||| || | ||||| | Sbjct 87 CTCGATCAGTTTTTCGAATACCGGGTATTTCTGCTGGTCATACCGCGCCACGTTGACGGG 28 Query 118474 CTCGCCGAGGAACATCGG 118491 || || | ||||||||| Sbjct 27 CTGACCAAAGAACATCGG 10 Score = 136 bits (150), Expect = 4e-27 Identities = 116/143 (81%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 117821 TTCAGCATATACTGAGTGCCGGACAAATGCAAGGCTTCATCACGGGCAATCAGTTCAATA 117880 || ||||| | ||| ||||||| || |||| |||||||||||| |||||||| || Sbjct 713 TTGAGCATGTGCTGGGTGCCGGTCAGGTGCAGGGCTTCATCACGCGCAATCAGGCGGATG 654 Query 117881 ATGTTGGTGTTGCCCAGCATTACCCCGCGCTCGCCGAACGCAAATGAGCAGGCGAAGCTC 117940 || |||| |||||| ||| ||| ||||||| | || || ||||||||||||||||| Sbjct 653 ATCTTGGCGTTGCCTTCCATCACCTTGCGCTCGGCAAAGGCGAATGAGCAGGCGAAGCTG 594 Query 117941 ACGTAGAAGCGGATCGCTTCCAG 117963 ||||||||||||||||||||||| Sbjct 593 ACGTAGAAGCGGATCGCTTCCAG 571 >seq7821 Length=1406 Score = 203 bits (224), Expect = 3e-47 Identities = 510/765 (67%), Gaps = 29/765 (4%) Strand=Plus/Plus Query 119118 GCAGCATACCCGCTCCGGATTTCTTGAAGGAAATCGCATCACGAGGTGGCTCAAAACCAT 119177 |||| ||||| || ||||| ||||| ||| | | | || ||||| |||| ||||| Sbjct 648 GCAGGATACCGTCTTTGGATTGCTTGACGGATACCAGGCCGCGCGGTGGTTCAATACCAT 707 Query 119178 TCGTGGAGTTAGTGATCTGGCTGGATGTCTCGCAAGGCATCATCGTGGACAGCGTGGAGT 119237 | |||| ||| | |||||||||||| || || | ||||| | || | ||| ||||||| Sbjct 708 TGGTGGCGTTGGCGATCTGGCTGGAGGTTTCTGATGGCATTAACGCAGTCAGGGTGGAGT 767 Query 119238 TACGCAGGCCATGAATCGCGATATCGACACGCAGCTTTTCCCAGTCCATCTTCAGTTCCG 119297 | |||||||||| | || ||| |||||| ||||||| |||| | || | | Sbjct 768 TGCGCAGGCCATCTTTTTGAATCTCGGTACGCAGGCTTTCCCAATCCAGCAGCAATGGCT 827 Query 119298 CAGTGTGGAGAGCATCCACCTCTTTTTTGTAACGGTCGATCGGCAGAATGCCCTGAGAGT 119357 | || | ||||||| || ||||| || || |||||||| || || | | || Sbjct 828 CGCTGCAAACGGCATCCAGATCCTTTTTATAGGTATCAATCGGCAGGATACCTTTGGCGT 887 Query 119358 AAGTTGTCTCGTGGAAGAGATCACATTTGCCCAGTTCTTTTGCCAGGTCAACCGACGCTT 119417 |||| || || ||||| | ||| ||| | || | ||| | ||||| || | Sbjct 888 AAGTGGTTTCCTGGAACGCGCCGCATGGGCCAAACTCACGCGACAGTTGTACCGAAGCCT 947 Query 119418 CCAGTAGGTAATACTGGAATGCTTCAGCCAGTTCGTGAACAGCGTTAGCTGCACGAGGGT 119477 || ||||| |||||| |||||| || ||| ||||||| || | | | | Sbjct 948 TGAGCAGGTAGAACTGGATCGCTTCAA--AG---GTGCGGTGCGTTAG--GCCCAACGCT 1000 Query 119478 ----CGCTG---TACTTCATCCCGCGCTTCGCCAGGTAGTACGCGAGGTTGGTCCAGCCA 119530 ||||| || || | ||| ||||||||||| |||||| |||| | ||| Sbjct 1001 TCATCGCTGGTGTAGTTAGTGCCGTTTTTCGCCAGGTAATACGCGTAGTTGATTACGCCT 1060 Query 119531 ATCCCCAGTGTACGGCGCAGCTTGGTCTT-CTCTGCC--GCCAGAACCGGGTAGTTCTGA 119587 | ||||||| |||||| | ||| ||| || || |||||||| | |||| Sbjct 1061 ACGCCCAGTGAACGGCGTTTGTCGGTGGCACTCAGCGCGGCTTTTACCGGGTAATCCTGA 1120 Query 119588 TAGTCCAGCAGTCGGTCCAGAGCACGAACCAGT-GTACGGACAGGCTCACGCATGTCTTC 119646 || || ||||| ||||| ||||| |||| | ||| ||||| | || || || Sbjct 1121 TACTCGAGCAGCGCATCCAGTGCACGCACCACCAGGTCGGCCAGGCCTTC-CAGTTCGTC 1179 Query 119647 CAGCTTCTCGATCTTGCCAAGGTTAATGGCAGACAGAGTACACAGGGCTACCTCGCCCGG 119706 ||| ||| | | || ||||| | ||| || | ||||| || || | |||||| Sbjct 1180 CAGTGACTCCAGCGCACCCAGGTTGAAGGCGGATAAGGTACAAAGCGCGATTTCGCCC-- 1237 Query 119707 GTCTTCTGGATCGTTAATGTCGTTGATCGGATGCGTCGGCAGCGCGATCTCCATACACAG 119766 || | |||||||||||| || | | | |||||||||||||||||||| ||||| Sbjct 1238 ----TCGGTATCGTTAATGTCATTCAGGGCGTTGGTCGGCAGCGCGATCTCCATGCACAG 1293 Query 119767 GTTGGACTGCTTCACCGGGGC--CTGTTTAGGGTCAAACGGGCTGTTGGTATTACAGTGG 119824 |||||| || ||| || || | | | || ||||||||||||| || || || ||| Sbjct 1294 GTTGGATTGACGCACTGGCGCAACAGCT--GGATCAAACGGGCTGTGCGTGTTGCAATGG 1351 Query 119825 TCAACGTGCTGAACATAAATACGACCAGTTTGTGAACGCTCCTGC 119869 || |||| ||| | || ||||| ||||| | ||| |||||| Sbjct 1352 TCTACGTTCTGGATGTAGATACGGCCAGTACCGGCACGTTCCTGC 1396 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 477473454798480