Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414525.1_2020 15-10-27] 12,086 sequences; 74,456,230 total letters Query= NC_017981.1 Length=49981 Score E Sequences producing significant alignments: (Bits) Value seq6103 140 1e-28 >seq6103 Length=1793 Score = 140 bits (154), Expect = 1e-28 Identities = 214/305 (70%), Gaps = 9/305 (3%) Strand=Plus/Plus Query 25978 ACAATTTCAGTGGTGTAGCGCTCAACGCCGTCCTTTTCCCACTTGCGGGTTTTCAGTTGC 26037 || |||||||||||||| || ||||| || ||||||||||||||||||| ||| | Sbjct 330 ACGATTTCAGTGGTGTAACGGGTCACGCCATCTTTTTCCCACTTGCGGGTTTGCAGACGG 389 Query 26038 CCCTCAATGTAAACCTGTGAACCTTTCTTCAGGTACTCGCCCGCGATCTCCGCTACCTTG 26097 || |||||||| ||| | ||||| |||||||| || || |||||||| || | ||| Sbjct 390 CCTTCAATGTAGACCGGACGGCCTTTTTTCAGGTATTCACCAGCGATCTCGGCCAGTTTG 449 Query 26098 CCAAACAGCACGACGCGATGCCATTCTGTCACTTCTTTCTTTTCGCCGGTCTGCTTATCG 26157 | | | | ||| | |||||||| || ||| | ||| |||| | ||| || Sbjct 450 CGATAAATCACAATATTGTGCCATTCGGTTTTTTCCTGCTTGACGCCTG---ACTTGTCT 506 Query 26158 TTCCAGCTTTCTGAGGTCGCTACGGTAATGTTGGCGACTGCGCCGCCATTAGGCATGTAA 26217 |||||| |||| | ||||| | | | |||||| || || | ||||| ||||| | Sbjct 507 TTCCAGTTTTCAGTCGTCGCAATACTGAAGTTGGCAACCGCTTCACCATTCGGCATAAAG 566 Query 26218 CGGATCTCTGGATCGTTCCCCAGGTTACCGACAAGGATTACTTTATTTACGCCGCGTGAT 26277 || | ||||| || |||||| ||||| || | || |||||||| || |||| Sbjct 567 CGCACTTCTGGGTCACGCCCCAGATTACCCACCAAAATAACTTTATTCAC------TGAT 620 Query 26278 GCCAT 26282 ||||| Sbjct 621 GCCAT 625 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 159794662778276