Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414525.1_2020 15-10-27] 12,086 sequences; 74,456,230 total letters Query= NC_018088.1 Length=104936 Score E Sequences producing significant alignments: (Bits) Value seq5177 174 1e-38 seq7821 109 4e-19 >seq5177 Length=2144 Score = 174 bits (192), Expect = 1e-38 Identities = 591/908 (65%), Gaps = 32/908 (4%) Strand=Plus/Plus Query 72876 AAGAAGATATGTTCTTAGGTCAACATGTAAACGTATCTCGGTACGACCAACAAAAGCTTA 72935 ||||| |||||||| ||||| | || ||||| | ||||| ||||| || || Sbjct 5 AAGAACCGATGTTCTTTGGTCAGCCCGTCAACGTGGCGCGGTATGACCAGCAGAAATACC 64 Query 72936 GTGCATTTGAAAAATTAATAGAAAAACAATTGAGCTTCTTTTGGCGACCTGATGAAATAG 72995 | ||| |||||| | || || |||||| || ||||| ||||| || || || | | Sbjct 65 CGGTATTCGAAAAACTGATCGAGAAACAACTGTCATTCTTCTGGCGTCCGGAAGAGGTGG 124 Query 72996 ATGTATCAAAAGACCGTTCTGATTGGCAAAAAATGACTGACTCTGAAAAGCATATTTTCA 73055 |||| ||| | ||||||||||||| || || | || ||||||||| || |||| Sbjct 125 ATGTGTCACAGGACCGTTCTGATTATCAGGGCCTGCCCGAGCATGAAAAGCACATCTTCA 184 Query 73056 TATCAAATCTTAAATACCAAACATTGCTTGATAGCATGGCTGCACGTTCTGTTAATATGG 73115 | || ||||| ||||| || |||| ||| ||| | ||| ||| ||| Sbjct 185 TCAGCAACCTTAAGTACCAGACGCTGCTGGATTCCATCCAGGGCCGTAGCCCTAACGTGG 244 Query 73116 TATTACTTCCACTTGTATCTTTACCTGAAGTTGAAACATGGATTGAAACATGGGCATTTA 73175 || || || || || || || ||||| ||||||| ||||| ||||| ||||| ||| Sbjct 245 CTTTGCTACCGCTGGTGTCATTGCCTGAGATTGAAACCTGGATAGAAACCTGGGCGTTTT 304 Query 73176 GTGAAACTATTCACTCTCGCTCATATACTCATATCTTGCGTAACCTTTTCGTAGATCCAA 73235 || || || ||||| ||||| || || |||||| | || ||| | || ||||| Sbjct 305 CCGAGACCATACACTCGCGCTCGTACACCCATATCATCCGCAACATCGTCAATGATCCCT 364 Query 73236 GTGAAGTATTTGATGATAT----TACAATTAACCCTGAAATATTAAAACGTGCTGAAAG- 73290 | |||||||| || |||| | ||| || | || || | | Sbjct 365 CCATCATTTTTGATGACATCGTGCGCAATGA------AAACATCACCGCGCGCGCATCGG 418 Query 73291 -TATCGCCAAATACTTTGATGATGTGAT---ACTGACAACTCAGTTCATTCA-ATCTCAA 73345 |||||| | || | ||||| |||| | ||| | | || ||||| | || Sbjct 419 ATATCGCGCATTATTACGATGAACTGATCCACCAGACCATGCTGT--ATTCACAGCT--G 474 Query 73346 GGTGAAGGT--ACTTATCAGGTCAATGGTGAAGAGTATGTAGTCTCAAAGCGTAAGCTTA 73403 || |||||| | |||| ||||||| ||| | ||| || || |||| | Sbjct 475 GGCGAAGGTGAGCACATCA--TCAATGGCGAAACCAAATCGGTCAACAAACGCGAGCTGA 532 Query 73404 AAGAGCGACTTTATC-TTGCCGTTTGTGCTGTCAATGCCTTAGAAGCTATCCGCTTTTAC 73462 || | | ||||| | |||| || | || ||| | | ||||| |||||||| ||| Sbjct 533 AAAAACTGCTTTACCGCTGCCTGATGAAC-GTGAATATCCTGGAAGCGATCCGCTTCTAC 591 Query 73463 GTAAGTTTCGCATGTTCATTTGCTTTTGCAGAACGTGAGCTACTTGAAGGTAATGCCAAG 73522 || || ||||| || ||||| || ||||| || || || | | ||||| || |||||| Sbjct 592 GTCAGCTTCGCCTGCTCATTCGCCTTTGCCGAGCGCAAGGTGATGGAAGGCAACGCCAAG 651 Query 73523 ATTATTAAACTAATCGCCCGTGATGAAGCCTTGCACTTAACTGGTACTCAGATGATTCTG 73582 || || || || || |||||||||||| ||||| | || || || ||| || || Sbjct 652 ATCATCCGCCTGATTGCGCGTGATGAAGCCCTGCACCTGACCGGCACCCAGCACATGCTC 711 Query 73583 AATAACTGGCGAACTGGCAAGGATGATCCTGAAATGCAAGAGATT---GCAGAAGACCTT 73639 || | | ||| | || | || || || || | |||||| || ||| | | Sbjct 712 AACATCATGCGTTCCGGTCAAGACGACCCCGAGTTCGCCGAGATTGCCGCTGAATTGCAT 771 Query 73640 AAAGATGTAAGTCTTAAGATCTTTATGGATGTTGTTGAAGAAGAAAAGCAATGGGCAAAA 73699 |||| || || | |||| || | | | || | ||||| ||||||||| || Sbjct 772 CAAGA-GT--GTTTCGAGATGTTCAAAACCGCCGCCGAGCAGGAAAAACAATGGGCAGAA 828 Query 73700 TATCTATTCAAAGATGGGTCAATGATCGGTCTTAATGAAGAAATACTTTGCCAGTACGTT 73759 || || || |||||||| || ||||| || || || |||| || || |||||||| ||| Sbjct 829 TACCTGTTTAAAGATGGCTCCATGATAGGCCTGAACAAAGACATCCTCTGCCAGTATGTT 888 Query 73760 GAGTACAT 73767 || ||||| Sbjct 889 GAATACAT 896 >seq7821 Length=1406 Score = 109 bits (120), Expect = 4e-19 Identities = 259/388 (67%), Gaps = 5/388 (1%) Strand=Plus/Minus Query 72424 AATGCAACAAATGGTATTGAACCACCTCGCGGTTTAATGAGCATTAAAGCAAGT-AAAGA 72482 || || || ||||||||||||||||| ||||| | | | | | |||||| ||||| Sbjct 717 AACGCCACCAATGGTATTGAACCACCGCGCGGCCTGGT-ATCCGTCAAGCAATCCAAAGA 659 Query 72483 TGGTATCTTGAAGCAAGTAGTACCTCATATTGGTACAATGGCTAATGACTATGAATTGTT 72542 |||||| || || ||||| ||| | || | || | | | || | ||| | Sbjct 658 CGGTATCCTGCGCCAGGTAGTGCCTGAGATCGACCGCCTGCGTGACCAGTACCAGTTGCT 599 Query 72543 GTGGAATATTCCAAGCAATAATGGCTATATTGAATTAGTTGCAATCATGCAAAAGTTTGT 72602 |||||| || |||| |||| | || || | | | || | |||||||| |||||||| Sbjct 598 GTGGAAAATGCCAAACAATGAGGGTTACCTCAGACTGGTGGGCATCATGCAGAAGTTTGT 539 Query 72603 CGATCAGGCAATCTCTGCGAACACAAATTATGACCCTACTAAATTCGCAAATGGCAAAGT 72662 ||| ||| | || ||||| ||||| || || ||||| || || | | |||| || Sbjct 538 CGACCAGTCGATTTCTGCCAACACCAACTACGACCCGACCCGTTTTGAAGGTGGCCGTGT 479 Query 72663 CCCAGTTAAGCAAATTCTTAAAGATTTAATACGAGGCTATAAGCTTGGTGTTAAAACATT 72722 || | |||||| | | ||||| || | | || || || || || | ||||| | Sbjct 478 GCCTATGAAGCAATTGTTGAAAGACTTGCTGCAAGTGTACAAACTGGGCATCAAAACGCT 419 Query 72723 CTATTACCATAACACCCGTGATGGTGCCAGTGAA---GGTATAGAAGAAGAAGATGAAAG 72779 || ||||||||||| ||||| ||||| | ||| || | |||| || ||||| | Sbjct 418 GTACTACCATAACACGCGTGACGGTGCGACAGAAGGCGGCACTGAAGCGGAGGATGATGG 359 Query 72780 CTGTGGTGGTGGGGCATGTAAAATCTAA 72807 |||| |||| || || || || ||| Sbjct 358 TTGTGCGAGTGGCGCTTGCAAGATTTAA 331 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 335620956379462