Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414525.1_2020
15-10-27] 12,086 sequences; 74,456,230 total letters
Query= NC_018269.1
Length=31766
Score E
Sequences producing significant alignments: (Bits) Value
seq4651 102 2e-17
>seq4651
Length=2439
Score = 102 bits (112), Expect = 2e-17
Identities = 157/224 (70%), Gaps = 0/224 (0%)
Strand=Plus/Minus
Query 25053 TCACTTAAATCCATGGCGAAAGAATTTAATTGTCCAATGATCGCGTTATCACAGCTTAAC 25112
||||||||| | |||||||||| | || ||| |||| || | |||||| | |||
Sbjct 1033 TCACTTAAAGCATTGGCGAAAGAGCTGGATGTGCCACTGATTGCCATCTCACAGTTGAAC 974
Query 25113 CGAGGTCTTGAAAACAGACAGGATAAGCGCCCAATTAACTCAGACTTGCGCGAGTCTGGC 25172
||| || | || | | | || ||||| || | | ||||||||||| ||||||
Sbjct 973 CGAAGTGTGGATCAACGGCCTGACAAGCGTCCGGTGATGAGTGACTTGCGCGAATCTGGC 914
Query 25173 GCGATAGAACAGGATGCTGATCTAATCGCATTGATATACCGAGACGAAGTGTATAACCCC 25232
||||| ||||| ||||| ||| | ||| || ||||||| ||||| || |||||
Sbjct 913 GCGATTGAACAAGATGCCGATTTGATCATGTTCGTATACCGTGACGAGTACTACAACCCG 854
Query 25233 GACAGCTCTGACAAAGGCATTGCCGAGATTATCATTGGCAAACA 25276
||||| |||| ||||| | || ||||| || || | ||| ||
Sbjct 853 GACAGTGCTGAAAAAGGGACGGCGGAGATCATTATCGCCAAGCA 810
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 101515028344896
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |