Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414525.1_2020
15-10-27] 12,086 sequences; 74,456,230 total letters
Query= NC_018282.1
Length=61167
Score E
Sequences producing significant alignments: (Bits) Value
seq4113 111 6e-20
seq3194 89.7 2e-13
>seq4113
Length=2865
Score = 111 bits (122), Expect = 6e-20
Identities = 133/178 (75%), Gaps = 2/178 (1%)
Strand=Plus/Minus
Query 6585 CTGTGGGACGCGATCATGCGCGGGACCTGGGATTGGGCGGAGCCGGGCGTGCTGTTCATC 6644
|||||||| | ||||||| |||| || | || ||||| || | | | |||
Sbjct 223 CTGTGGGATGTGATCATGTCTTCCACCTACGACTTTGCCGAGCCAGGGTTTATCCTGATC 164
Query 6645 GAC-GCGATCAACCGCATGAACAACCTCTGGTACTGCGAGACCATCGCCGCCACCAACCC 6703
||| ||| ||||| ||||||||| ||||| |||||| | |||| ||||||||||||
Sbjct 163 GACCGCG-TCAACGAAATGAACAACAACTGGTTCTGCGAAAACATCCGCGCCACCAACCC 105
Query 6704 CTGCGGTGAGCAACCCCTCCCGCCCTACGGTGCCTGTCTCCTGGGCTCCTTCAACCTG 6761
|| ||||||||||| || || || ||||| ||||| || ||||| ||| ||||||||
Sbjct 104 GTGTGGTGAGCAACCACTGCCACCTTACGGCGCCTGCCTGCTGGGTTCCGTCAACCTG 47
>seq3194
Length=4057
Score = 89.7 bits (98), Expect = 2e-13
Identities = 81/102 (79%), Gaps = 0/102 (0%)
Strand=Plus/Plus
Query 6660 ATGAACAACCTCTGGTACTGCGAGACCATCGCCGCCACCAACCCCTGCGGTGAGCAACCC 6719
||||||||| ||||| ||| || | |||| ||| |||||||||||||| ||||||||
Sbjct 1 ATGAACAACAACTGGTTCTGTGAAAACATCCGCGCTACCAACCCCTGCGGCGAGCAACCA 60
Query 6720 CTCCCGCCCTACGGTGCCTGTCTCCTGGGCTCCTTCAACCTG 6761
| ||||| ||||| || || || |||||||| | ||||||
Sbjct 61 TTGCCGCCATACGGCGCGTGCCTGCTGGGCTCAGTTAACCTG 102
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 195584725406428
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |