Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414525.1_2020 15-10-27] 12,086 sequences; 74,456,230 total letters Query= NC_018282.1 Length=61167 Score E Sequences producing significant alignments: (Bits) Value seq4113 111 6e-20 seq3194 89.7 2e-13 >seq4113 Length=2865 Score = 111 bits (122), Expect = 6e-20 Identities = 133/178 (75%), Gaps = 2/178 (1%) Strand=Plus/Minus Query 6585 CTGTGGGACGCGATCATGCGCGGGACCTGGGATTGGGCGGAGCCGGGCGTGCTGTTCATC 6644 |||||||| | ||||||| |||| || | || ||||| || | | | ||| Sbjct 223 CTGTGGGATGTGATCATGTCTTCCACCTACGACTTTGCCGAGCCAGGGTTTATCCTGATC 164 Query 6645 GAC-GCGATCAACCGCATGAACAACCTCTGGTACTGCGAGACCATCGCCGCCACCAACCC 6703 ||| ||| ||||| ||||||||| ||||| |||||| | |||| |||||||||||| Sbjct 163 GACCGCG-TCAACGAAATGAACAACAACTGGTTCTGCGAAAACATCCGCGCCACCAACCC 105 Query 6704 CTGCGGTGAGCAACCCCTCCCGCCCTACGGTGCCTGTCTCCTGGGCTCCTTCAACCTG 6761 || ||||||||||| || || || ||||| ||||| || ||||| ||| |||||||| Sbjct 104 GTGTGGTGAGCAACCACTGCCACCTTACGGCGCCTGCCTGCTGGGTTCCGTCAACCTG 47 >seq3194 Length=4057 Score = 89.7 bits (98), Expect = 2e-13 Identities = 81/102 (79%), Gaps = 0/102 (0%) Strand=Plus/Plus Query 6660 ATGAACAACCTCTGGTACTGCGAGACCATCGCCGCCACCAACCCCTGCGGTGAGCAACCC 6719 ||||||||| ||||| ||| || | |||| ||| |||||||||||||| |||||||| Sbjct 1 ATGAACAACAACTGGTTCTGTGAAAACATCCGCGCTACCAACCCCTGCGGCGAGCAACCA 60 Query 6720 CTCCCGCCCTACGGTGCCTGTCTCCTGGGCTCCTTCAACCTG 6761 | ||||| ||||| || || || |||||||| | |||||| Sbjct 61 TTGCCGCCATACGGCGCGTGCCTGCTGGGCTCAGTTAACCTG 102 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 195584725406428