Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414525.1_2020 15-10-27] 12,086 sequences; 74,456,230 total letters Query= NC_018843.1 Length=103299 Score E Sequences producing significant alignments: (Bits) Value seq7821 259 3e-64 seq5177 179 2e-40 >seq7821 Length=1406 Score = 259 bits (286), Expect = 3e-64 Identities = 686/1034 (66%), Gaps = 44/1034 (4%) Strand=Plus/Minus Query 69048 TGATGCAGGAGCGTGCCTCCACTGGTCGTGTTTATATTGCCAACGTCGACCACATGAACG 69107 |||||||||| |||||| ||||| ||| | || || ||||| ||||| ||| Sbjct 1400 TGATGCAGGAACGTGCCGGTACTGGCCGTATCTACATCCAGAACGTAGACCATTGCAACA 1341 Query 69108 ATCACGGCGCATTCGTTCCGGAAATTGCACCGGTACACCAGTCCAATCTCTGTATGGAGA 69167 ||| || | || | ||| | |||| || || | || ||||| || || ||||||| Sbjct 1340 CGCACAGCCCGTTTGATCCAGCTGTTGCGCCAGTGCGTCAATCCAACCTGTGCATGGAGA 1281 Query 69168 TCACGCTACCGACCAAGCCACTGGCGTTCACTGACGATCCGAACGGGGAAATCGCGCTTT 69227 || |||| |||||||| | ||| || | ||||| | | || ||||||||||||| Sbjct 1280 TCGCGCTGCCGACCAACGCCCTGAATGACATTAACGATACCGAGGGCGAAATCGCGCTTT 1221 Query 69228 GCACCCTGTCTGCGTTCAACCTGGGCGCGATCCGCACGCTGGACTCACTGAAAGACGTGG 69287 | ||| | || || ||||||||||| ||| | | |||||| |||| ||| | ||| Sbjct 1220 GTACCTTATCCGCCTTCAACCTGGGTGCGCTGGAGTCACTGGACGAACTGGAAGGCCTGG 1161 Query 69288 C-GTTTTACGCTGTGGCG-GCACTGGACTCTCTGCTCGACTATCAGGACTACCCTATG-- 69343 | | | | || ||| |||||||| | |||||||| |||||||| ||||| | Sbjct 1160 CCGACCT--GGTGGTGCGTGCACTGGATGCGCTGCTCGAGTATCAGGATTACCCGGTAAA 1103 Query 69344 -GCTGCTGCAGAAATCC-CGGCTAAAGCTCGTCGTAGTCTGGGTATTGGCGTGACCAACT 69401 || || || || || | | ||| || ||| ||||| | ||||| | ||||| Sbjct 1102 AGCCGC-GCTGAGTGCCACCGACAAA---CGCCGTTCACTGGGCGTAGGCGTAATCAACT 1047 Query 69402 TTGCTTACTATCTGGCGAAGAACGGCTTTAACTACTC------TGACGCTGCGGGCAACC 69455 || || || |||||||| |||||| ||||||| | ||| || |||| Sbjct 1046 ACGCGTATTACCTGGCGAAAAACGGCACTAACTACACCAGCGATGAAGCGTTGGGC---- 991 Query 69456 AGCTGGTGCATGAGACCTTCGAAGCCATTCAGTACTACCTGCTCGATGCGAGCTGCCGAC 69515 || ||| ||||| ||||| || |||| |||||||||| | || | || Sbjct 990 --CTAACGCACCGCACCTTTGAAGCGATCCAGTTCTACCTGCTCAAGGCTTCGGTACAAC 933 Query 69516 TGGCCGAAGCGAAAGGTGCATGTGACTGGTTCTCCCACACCAAATACGCACAGGGCCAGC 69575 || | | | || |||| | | |||| | |||| ||||| | || | Sbjct 932 TGTCGCGTGAGTTTGGCCCATGCGGCGCGTTCCAGGAAACCACTTACGCCAAAGGTATCC 873 Query 69576 TGCCAGTCGACCACTATCGCAAAACG--CTGGATACCAAC--CCG-GAGACATCTTTCGA 69630 |||| | || |||| |||| | |||||| || | | ||| ||| | Sbjct 872 TGCCGATTGATACCTATA--AAAAGGATCTGGATGCCGTTTGCAGCGAGCCATTGCT--- 818 Query 69631 GCTGAAAATGCCGTGGGAAGAGCTGCGTGGCCGTATCCGTGAGCATGGTCTGCGTAACTC 69690 |||| | |||||| |||||| | || | | |||| ||||| ||||| Sbjct 817 GCTGGAT------TGGGAAAGCCTGCGTACCGAGATTCAAAAAGATGGCCTGCGCAACTC 764 Query 69691 AACTCTGACCGCTCAAATGCCGTGTGAGACGTCCAGCCAGATCACCAACTCCACCAATGG 69750 || ||||| || |||||| | || || |||||||||||| ||||| |||||||||| Sbjct 763 CACCCTGACTGCGTTAATGCCATCAGAAACCTCCAGCCAGATCGCCAACGCCACCAATGG 704 Query 69751 TATTGAGCCGCCCCGCGGCCCGGTATCCGTGAAGTCTTCCAAAGACGGCATCGTGAAGAT 69810 |||||| || || ||||||| ||||||||| ||| ||||||||||| ||| || Sbjct 703 TATTGAACCACCGCGCGGCCTGGTATCCGTCAAGCAATCCAAAGACGGTATCCTGCGCCA 644 Query 69811 GGTCGTTCCAGACTTCGCTCAACTGAAAGACCAGTACGAGTACCTGTGGGATATGCCGGA 69870 ||| || || || ||| | ||| ||||||||| ||| |||||| | ||||| | Sbjct 643 GGTAGTGCCTGAGATCGACCGCCTGCGTGACCAGTACCAGTTGCTGTGGAAAATGCCAAA 584 Query 69871 TAACCGCGGCTATCT--GACTAAGGTGGCCATCATTCAGAAGTTCTTCGATCAGGCCATC 69928 || || || || |||| ||||| |||||| |||||||| |||| ||| | || Sbjct 583 CAATGAGGGTTACCTCAGACT--GGTGGGCATCATGCAGAAGTTTGTCGACCAGTCGATT 526 Query 69929 TCTGCGAACACCAACTACGACCCGACTCGCTTCCCTGGCGACAAGGTTCCAATGATGAAG 69988 ||||| |||||||||||||||||||| || || || | | || || |||| | | Sbjct 525 TCTGCCAACACCAACTACGACCCGACCCGTTTTGAAGGTGGCCGTGTGCCTATGAAGCAA 466 Query 69989 CTGCTGGAAGATCTGCTGTTTGCGTATCAGCAAGGTGTGAAGACGCTTTATTACCACAAC 70048 || || |||| ||||| | ||| | | || | || ||||| || ||||| ||| Sbjct 465 TTGTTGAAAGACTTGCTGCAAGTGTACAAACTGGGCATCAAAACGCTGTACTACCATAAC 406 Query 70049 ACGCGTGATGGCGC 70062 |||||||| || || Sbjct 405 ACGCGTGACGGTGC 392 >seq5177 Length=2144 Score = 179 bits (198), Expect = 2e-40 Identities = 274/388 (71%), Gaps = 7/388 (2%) Strand=Plus/Plus Query 70306 AAGGAACCTATGTTCCTCGGCCAGTCTGTCAACGTAGCACGCTACGATCAGCAAAAGTAC 70365 || ||||| |||||| | || ||| | |||||||| || || || || ||||| || ||| Sbjct 4 AAAGAACCGATGTTCTTTGGTCAGCCCGTCAACGTGGCGCGGTATGACCAGCAGAAATAC 63 Query 70366 CGTGACTTCGAAAAGCTGATTGAAAAACAACTTTCGTTCTTCTGGCGCCCTGAAGAAGTC 70425 | | |||||||| ||||| || |||||||| || ||||||||||| || ||||| || Sbjct 64 CCGGTATTCGAAAAACTGATCGAGAAACAACTGTCATTCTTCTGGCGTCCGGAAGAGGTG 123 Query 70426 GACATTACCACTGACCGCATCGACTTCAATACCAAG--CTGCAAGAGCACGAGCGCCATA 70483 || | | ||||| || | | || || | |||| ||||| || || | Sbjct 124 GATGTGTCACAGGACCGT-TC----TGATTATCAGGGCCTGCCCGAGCATGAAAAGCACA 178 Query 70484 TTTTCCTGAGCAACCTGCGTTACCAGACGCTGTTGGATTCCGTTCAGGGTCGCAGTCCTA 70543 | ||| | |||||||| |||||||||||| |||||||| | ||||| || || |||| Sbjct 179 TCTTCATCAGCAACCTTAAGTACCAGACGCTGCTGGATTCCATCCAGGGCCGTAGCCCTA 238 Query 70544 ACGCAACACTGCTGCCGCTGATCTCCATTCCTGAGCTGGAGACATGGGTCGAGACCTGGT 70603 ||| | |||| |||||| | || | |||||| | || || ||| | || |||||| Sbjct 239 ACGTGGCTTTGCTACCGCTGGTGTCATTGCCTGAGATTGAAACCTGGATAGAAACCTGGG 298 Query 70604 CGTTCTCCGAGACGATTCACAGCCGCAGCTATACGCACATTATCCGCGGTATGGTGGATG 70663 |||| |||||||| || ||| ||| || || || || |||||| || || ||| Sbjct 299 CGTTTTCCGAGACCATACACTCGCGCTCGTACACCCATATCATCCGCAACATCGTCAATG 358 Query 70664 ACCCTAGCATCGTTTTCGACGGCATCGT 70691 | || |||| |||| || | |||||| Sbjct 359 ATCCCTCCATCATTTTTGATGACATCGT 386 Score = 150 bits (166), Expect = 1e-31 Identities = 342/506 (68%), Gaps = 24/506 (5%) Strand=Plus/Plus Query 70870 GTGAATGCACTGGAGGCGATTCGCTTCTACGTGAGCTTTGCGTGTACGTTCGCCTTTGGT 70929 |||||| ||||| ||||| ||||||||||| ||||| || || | |||||||||| Sbjct 562 GTGAATATCCTGGAAGCGATCCGCTTCTACGTCAGCTTCGCCTGCTCATTCGCCTTTGCC 621 Query 70930 GAGCGGAAGCTGCTGGAGGGCAACACGAAGATCATGCGCTTTATCGCGCGCGACGAGGCT 70989 ||||| ||| || |||| |||||| | |||||||| ||| | || ||||| || || || Sbjct 622 GAGCGCAAGGTGATGGAAGGCAACGCCAAGATCATCCGCCTGATTGCGCGTGATGAAGCC 681 Query 70990 CTACATTGCGAAGGGACTGAACGCATGATCCGCTTTATGCGTACCGGTCGTGAAG-GTCT 71048 || || || || | | |||| || | | |||||| |||||| || | | Sbjct 682 CTGCACCTGACCGGCACCCAGCACATGCTCAACATCATGCGTTCCGGTCAAGACGACCCC 741 Query 71049 GATGTGGAAGATGATTGCCGCAGAA------GAAGAGAGCTTC---ATCTATCAGACCAT 71099 || | | || ||||||||| ||| ||||| | ||| || | ||| | | Sbjct 742 GAGTTCGCCGA-GATTGCCGCTGAATTGCATCAAGAGTGTTTCGAGATGT-TCAAAAC-- 797 Query 71100 GATGGACGTGGCCGGGCAGGAAATGCGCTGGGCTGACTATCTGTTTAAAGACGGCTCAAT 71159 || |||| |||||||| | ||||| || || ||||||||||| ||||| || Sbjct 798 ------CGCCGCCGAGCAGGAAAAACAATGGGCAGAATACCTGTTTAAAGATGGCTCCAT 851 Query 71160 GATTGGCTTGAATGCCGACATCCTCAAAAGCTATGTGAAATACCGCACCAAC-CTGGCAA 71218 ||| ||| |||| ||||||||| ||||| ||||| ||||||| | | Sbjct 852 GATAGGCCTGAACAAAGACATCCTCTGCCAGTATGTTGAATACATCACCAACAGCCGTAT 911 Query 71219 TGCGTCGTCTGGGGCTGCGA-CCGCTGTTCCCGGAAATTAAAGACGATCCACTGGTATGG 71277 || ||| | || ||| | |||| ||||| | ||| | | || | |||| Sbjct 912 GGCCTCG-GTTGGTTTGCCAGCCGC-ATTCCCCAATGCCAAAAGCAACCCGATTCCATGG 969 Query 71278 ATGAACAAATGGCTGCTGTCAGACACCCTGCAGATCGCTCCGCAGGAAGCTGAACAAAGC 71337 || |||| |||||| |||||| ||| | || |||| |||||||||| |||| ||| Sbjct 970 ATCAACACCTGGCTGGCGTCAGATACCGTACAAGTCGCCCCGCAGGAAGTAGAACTCAGC 1029 Query 71338 AACTACCTCGTCGGCCAGATTGATTC 71363 |||||| |||| ||||||||||| Sbjct 1030 TCCTACCTGATCGGTCAGATTGATTC 1055 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 330383327985960