Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414525.1_2020
15-10-27] 12,086 sequences; 74,456,230 total letters
Query= NC_018843.1
Length=103299
Score E
Sequences producing significant alignments: (Bits) Value
seq7821 259 3e-64
seq5177 179 2e-40
>seq7821
Length=1406
Score = 259 bits (286), Expect = 3e-64
Identities = 686/1034 (66%), Gaps = 44/1034 (4%)
Strand=Plus/Minus
Query 69048 TGATGCAGGAGCGTGCCTCCACTGGTCGTGTTTATATTGCCAACGTCGACCACATGAACG 69107
|||||||||| |||||| ||||| ||| | || || ||||| ||||| |||
Sbjct 1400 TGATGCAGGAACGTGCCGGTACTGGCCGTATCTACATCCAGAACGTAGACCATTGCAACA 1341
Query 69108 ATCACGGCGCATTCGTTCCGGAAATTGCACCGGTACACCAGTCCAATCTCTGTATGGAGA 69167
||| || | || | ||| | |||| || || | || ||||| || || |||||||
Sbjct 1340 CGCACAGCCCGTTTGATCCAGCTGTTGCGCCAGTGCGTCAATCCAACCTGTGCATGGAGA 1281
Query 69168 TCACGCTACCGACCAAGCCACTGGCGTTCACTGACGATCCGAACGGGGAAATCGCGCTTT 69227
|| |||| |||||||| | ||| || | ||||| | | || |||||||||||||
Sbjct 1280 TCGCGCTGCCGACCAACGCCCTGAATGACATTAACGATACCGAGGGCGAAATCGCGCTTT 1221
Query 69228 GCACCCTGTCTGCGTTCAACCTGGGCGCGATCCGCACGCTGGACTCACTGAAAGACGTGG 69287
| ||| | || || ||||||||||| ||| | | |||||| |||| ||| | |||
Sbjct 1220 GTACCTTATCCGCCTTCAACCTGGGTGCGCTGGAGTCACTGGACGAACTGGAAGGCCTGG 1161
Query 69288 C-GTTTTACGCTGTGGCG-GCACTGGACTCTCTGCTCGACTATCAGGACTACCCTATG-- 69343
| | | | || ||| |||||||| | |||||||| |||||||| ||||| |
Sbjct 1160 CCGACCT--GGTGGTGCGTGCACTGGATGCGCTGCTCGAGTATCAGGATTACCCGGTAAA 1103
Query 69344 -GCTGCTGCAGAAATCC-CGGCTAAAGCTCGTCGTAGTCTGGGTATTGGCGTGACCAACT 69401
|| || || || || | | ||| || ||| ||||| | ||||| | |||||
Sbjct 1102 AGCCGC-GCTGAGTGCCACCGACAAA---CGCCGTTCACTGGGCGTAGGCGTAATCAACT 1047
Query 69402 TTGCTTACTATCTGGCGAAGAACGGCTTTAACTACTC------TGACGCTGCGGGCAACC 69455
|| || || |||||||| |||||| ||||||| | ||| || ||||
Sbjct 1046 ACGCGTATTACCTGGCGAAAAACGGCACTAACTACACCAGCGATGAAGCGTTGGGC---- 991
Query 69456 AGCTGGTGCATGAGACCTTCGAAGCCATTCAGTACTACCTGCTCGATGCGAGCTGCCGAC 69515
|| ||| ||||| ||||| || |||| |||||||||| | || | ||
Sbjct 990 --CTAACGCACCGCACCTTTGAAGCGATCCAGTTCTACCTGCTCAAGGCTTCGGTACAAC 933
Query 69516 TGGCCGAAGCGAAAGGTGCATGTGACTGGTTCTCCCACACCAAATACGCACAGGGCCAGC 69575
|| | | | || |||| | | |||| | |||| ||||| | || |
Sbjct 932 TGTCGCGTGAGTTTGGCCCATGCGGCGCGTTCCAGGAAACCACTTACGCCAAAGGTATCC 873
Query 69576 TGCCAGTCGACCACTATCGCAAAACG--CTGGATACCAAC--CCG-GAGACATCTTTCGA 69630
|||| | || |||| |||| | |||||| || | | ||| ||| |
Sbjct 872 TGCCGATTGATACCTATA--AAAAGGATCTGGATGCCGTTTGCAGCGAGCCATTGCT--- 818
Query 69631 GCTGAAAATGCCGTGGGAAGAGCTGCGTGGCCGTATCCGTGAGCATGGTCTGCGTAACTC 69690
|||| | |||||| |||||| | || | | |||| ||||| |||||
Sbjct 817 GCTGGAT------TGGGAAAGCCTGCGTACCGAGATTCAAAAAGATGGCCTGCGCAACTC 764
Query 69691 AACTCTGACCGCTCAAATGCCGTGTGAGACGTCCAGCCAGATCACCAACTCCACCAATGG 69750
|| ||||| || |||||| | || || |||||||||||| ||||| ||||||||||
Sbjct 763 CACCCTGACTGCGTTAATGCCATCAGAAACCTCCAGCCAGATCGCCAACGCCACCAATGG 704
Query 69751 TATTGAGCCGCCCCGCGGCCCGGTATCCGTGAAGTCTTCCAAAGACGGCATCGTGAAGAT 69810
|||||| || || ||||||| ||||||||| ||| ||||||||||| ||| ||
Sbjct 703 TATTGAACCACCGCGCGGCCTGGTATCCGTCAAGCAATCCAAAGACGGTATCCTGCGCCA 644
Query 69811 GGTCGTTCCAGACTTCGCTCAACTGAAAGACCAGTACGAGTACCTGTGGGATATGCCGGA 69870
||| || || || ||| | ||| ||||||||| ||| |||||| | ||||| |
Sbjct 643 GGTAGTGCCTGAGATCGACCGCCTGCGTGACCAGTACCAGTTGCTGTGGAAAATGCCAAA 584
Query 69871 TAACCGCGGCTATCT--GACTAAGGTGGCCATCATTCAGAAGTTCTTCGATCAGGCCATC 69928
|| || || || |||| ||||| |||||| |||||||| |||| ||| | ||
Sbjct 583 CAATGAGGGTTACCTCAGACT--GGTGGGCATCATGCAGAAGTTTGTCGACCAGTCGATT 526
Query 69929 TCTGCGAACACCAACTACGACCCGACTCGCTTCCCTGGCGACAAGGTTCCAATGATGAAG 69988
||||| |||||||||||||||||||| || || || | | || || |||| | |
Sbjct 525 TCTGCCAACACCAACTACGACCCGACCCGTTTTGAAGGTGGCCGTGTGCCTATGAAGCAA 466
Query 69989 CTGCTGGAAGATCTGCTGTTTGCGTATCAGCAAGGTGTGAAGACGCTTTATTACCACAAC 70048
|| || |||| ||||| | ||| | | || | || ||||| || ||||| |||
Sbjct 465 TTGTTGAAAGACTTGCTGCAAGTGTACAAACTGGGCATCAAAACGCTGTACTACCATAAC 406
Query 70049 ACGCGTGATGGCGC 70062
|||||||| || ||
Sbjct 405 ACGCGTGACGGTGC 392
>seq5177
Length=2144
Score = 179 bits (198), Expect = 2e-40
Identities = 274/388 (71%), Gaps = 7/388 (2%)
Strand=Plus/Plus
Query 70306 AAGGAACCTATGTTCCTCGGCCAGTCTGTCAACGTAGCACGCTACGATCAGCAAAAGTAC 70365
|| ||||| |||||| | || ||| | |||||||| || || || || ||||| || |||
Sbjct 4 AAAGAACCGATGTTCTTTGGTCAGCCCGTCAACGTGGCGCGGTATGACCAGCAGAAATAC 63
Query 70366 CGTGACTTCGAAAAGCTGATTGAAAAACAACTTTCGTTCTTCTGGCGCCCTGAAGAAGTC 70425
| | |||||||| ||||| || |||||||| || ||||||||||| || ||||| ||
Sbjct 64 CCGGTATTCGAAAAACTGATCGAGAAACAACTGTCATTCTTCTGGCGTCCGGAAGAGGTG 123
Query 70426 GACATTACCACTGACCGCATCGACTTCAATACCAAG--CTGCAAGAGCACGAGCGCCATA 70483
|| | | ||||| || | | || || | |||| ||||| || || |
Sbjct 124 GATGTGTCACAGGACCGT-TC----TGATTATCAGGGCCTGCCCGAGCATGAAAAGCACA 178
Query 70484 TTTTCCTGAGCAACCTGCGTTACCAGACGCTGTTGGATTCCGTTCAGGGTCGCAGTCCTA 70543
| ||| | |||||||| |||||||||||| |||||||| | ||||| || || ||||
Sbjct 179 TCTTCATCAGCAACCTTAAGTACCAGACGCTGCTGGATTCCATCCAGGGCCGTAGCCCTA 238
Query 70544 ACGCAACACTGCTGCCGCTGATCTCCATTCCTGAGCTGGAGACATGGGTCGAGACCTGGT 70603
||| | |||| |||||| | || | |||||| | || || ||| | || ||||||
Sbjct 239 ACGTGGCTTTGCTACCGCTGGTGTCATTGCCTGAGATTGAAACCTGGATAGAAACCTGGG 298
Query 70604 CGTTCTCCGAGACGATTCACAGCCGCAGCTATACGCACATTATCCGCGGTATGGTGGATG 70663
|||| |||||||| || ||| ||| || || || || |||||| || || |||
Sbjct 299 CGTTTTCCGAGACCATACACTCGCGCTCGTACACCCATATCATCCGCAACATCGTCAATG 358
Query 70664 ACCCTAGCATCGTTTTCGACGGCATCGT 70691
| || |||| |||| || | ||||||
Sbjct 359 ATCCCTCCATCATTTTTGATGACATCGT 386
Score = 150 bits (166), Expect = 1e-31
Identities = 342/506 (68%), Gaps = 24/506 (5%)
Strand=Plus/Plus
Query 70870 GTGAATGCACTGGAGGCGATTCGCTTCTACGTGAGCTTTGCGTGTACGTTCGCCTTTGGT 70929
|||||| ||||| ||||| ||||||||||| ||||| || || | ||||||||||
Sbjct 562 GTGAATATCCTGGAAGCGATCCGCTTCTACGTCAGCTTCGCCTGCTCATTCGCCTTTGCC 621
Query 70930 GAGCGGAAGCTGCTGGAGGGCAACACGAAGATCATGCGCTTTATCGCGCGCGACGAGGCT 70989
||||| ||| || |||| |||||| | |||||||| ||| | || ||||| || || ||
Sbjct 622 GAGCGCAAGGTGATGGAAGGCAACGCCAAGATCATCCGCCTGATTGCGCGTGATGAAGCC 681
Query 70990 CTACATTGCGAAGGGACTGAACGCATGATCCGCTTTATGCGTACCGGTCGTGAAG-GTCT 71048
|| || || || | | |||| || | | |||||| |||||| || | |
Sbjct 682 CTGCACCTGACCGGCACCCAGCACATGCTCAACATCATGCGTTCCGGTCAAGACGACCCC 741
Query 71049 GATGTGGAAGATGATTGCCGCAGAA------GAAGAGAGCTTC---ATCTATCAGACCAT 71099
|| | | || ||||||||| ||| ||||| | ||| || | ||| | |
Sbjct 742 GAGTTCGCCGA-GATTGCCGCTGAATTGCATCAAGAGTGTTTCGAGATGT-TCAAAAC-- 797
Query 71100 GATGGACGTGGCCGGGCAGGAAATGCGCTGGGCTGACTATCTGTTTAAAGACGGCTCAAT 71159
|| |||| |||||||| | ||||| || || ||||||||||| ||||| ||
Sbjct 798 ------CGCCGCCGAGCAGGAAAAACAATGGGCAGAATACCTGTTTAAAGATGGCTCCAT 851
Query 71160 GATTGGCTTGAATGCCGACATCCTCAAAAGCTATGTGAAATACCGCACCAAC-CTGGCAA 71218
||| ||| |||| ||||||||| ||||| ||||| ||||||| | |
Sbjct 852 GATAGGCCTGAACAAAGACATCCTCTGCCAGTATGTTGAATACATCACCAACAGCCGTAT 911
Query 71219 TGCGTCGTCTGGGGCTGCGA-CCGCTGTTCCCGGAAATTAAAGACGATCCACTGGTATGG 71277
|| ||| | || ||| | |||| ||||| | ||| | | || | ||||
Sbjct 912 GGCCTCG-GTTGGTTTGCCAGCCGC-ATTCCCCAATGCCAAAAGCAACCCGATTCCATGG 969
Query 71278 ATGAACAAATGGCTGCTGTCAGACACCCTGCAGATCGCTCCGCAGGAAGCTGAACAAAGC 71337
|| |||| |||||| |||||| ||| | || |||| |||||||||| |||| |||
Sbjct 970 ATCAACACCTGGCTGGCGTCAGATACCGTACAAGTCGCCCCGCAGGAAGTAGAACTCAGC 1029
Query 71338 AACTACCTCGTCGGCCAGATTGATTC 71363
|||||| |||| |||||||||||
Sbjct 1030 TCCTACCTGATCGGTCAGATTGATTC 1055
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 330383327985960
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |