Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414525.1_2020 15-10-27] 12,086 sequences; 74,456,230 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq151 123 2e-23 seq276 104 2e-17 >seq151 Length=51439 Score = 123 bits (136), Expect = 2e-23 Identities = 166/231 (72%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 48536 GTCGCCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATC 48595 || ||| || | || || | ||||| || ||||| ||| || || || ||||| || Sbjct 38042 GTTGCCACCGCGCAGGCGAAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTC 38101 Query 48596 AGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGT 48655 | || | || |||| |||| |||||| |||||||| ||||| ||||| || || | Sbjct 38102 ACTCAGCGTACGGCCGTCTTCCAGCTGCTTGCCGGCAAAGATCAGCCGCTGCTGGTCAGG 38161 Query 48656 GGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTC 48715 || | |||||||||||| ||||| || || ||| | | || || |||| ||| Sbjct 38162 CGGGATGCCCTCCTTGTCCTGGATCTTCTGCTTCACATTGTCAATCGAGTCAGACGGCTC 38221 Query 48716 CACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 ||| |||| ||||||||| || || ||||| || || || ||||||||||| Sbjct 38222 CACGTCCAGCGTAATCGTCTTCCCTGTCAACGTCTTCACGAAAATCTGCAT 38272 Score = 116 bits (128), Expect = 3e-21 Identities = 159/222 (72%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || || | ||||| || ||||| ||| || || || ||||| || || | || Sbjct 38283 AGGCGAAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGG 38342 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 |||| |||| |||||| |||||||| ||||| ||||| || || | || | ||||||| Sbjct 38343 CCGTCTTCCAGCTGCTTGCCGGCAAAGATCAGCCGCTGCTGGTCAGGCGGGATGCCCTCC 38402 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 ||||| ||||| || || ||| | | || || |||| |||||| |||| ||| Sbjct 38403 TTGTCCTGGATCTTCTGCTTCACATTGTCAATCGAGTCAGACGGCTCCACGTCCAGCGTG 38462 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCATCGTG 48770 ||||| || || ||||| || || || |||||||||||| || Sbjct 38463 ATCGTCTTCCCTGTCAACGTCTTCACGAAAATCTGCATCTTG 38504 >seq276 Length=79158 Score = 104 bits (114), Expect = 2e-17 Identities = 139/188 (74%), Gaps = 4/188 (2%) Strand=Plus/Plus Query 9115 TTCACGACAAAGTCTGT-GTCGGAATGATTGAACAGCACCACTCCCACGTTACCCCTGTA 9173 || ||| |||||||| |||| | || |||||||| | ||| ||||||||||| | ||| Sbjct 9941 TTGACGGCAAAGTCTTCCGTCG-AGTGGTTGAACAGGAGCACGCCCACGTTACCGCGGTA 9999 Query 9174 ATCCTCATCGATCACACCAGCACCCACGTCGATGAAGTGCTTGACCGCTAGTCCAGAGCG 9233 ||| ||||||| |||||||| || ||||||||| | ||| | ||| || || ||||| Sbjct 10000 ATCGGCATCGATGACACCAGCGCCAGTGTCGATGAAATTCTTCAGCGCAAGACCCGAGCG 10059 Query 9234 GGGCGCGATTCGACCGTAGCATCCCACCGGTAATTGCACCCGCAA-GTCGGTCATGACCA 9292 ||||| | || ||||||| | | || | ||| |||| ||| ||| |||||| Sbjct 10060 AGGCGCCACGCGGGCGTAGCAGCTGTCAGG-CACAGCAATGGCAAGGTCCGTCTTGACCA 10118 Query 9293 GCCCCTTG 9300 | |||||| Sbjct 10119 GACCCTTG 10126 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380881488605778