Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414525.1_2020 15-10-27] 12,086 sequences; 74,456,230 total letters Query= NC_019405.1 Length=215710 Score E Sequences producing significant alignments: (Bits) Value seq5730 205 1e-47 >seq5730 Length=1907 Score = 205 bits (226), Expect = 1e-47 Identities = 657/995 (66%), Gaps = 36/995 (4%) Strand=Plus/Plus Query 136687 TCCACGAGGTCCTTCTGGGCCTCCATGACCGCGTCGATGTCCTTGTAGGCCATCGGGATT 136746 || || || |||| ||| || |||| ||||| ||||| |||||| ||| || | Sbjct 461 TCGACAAGATCCTGCTGCGCGGCCATCACCGCCTCGATCGACTTGTATGCCGCTGGCGAT 520 Query 136747 TCGTCGATCACGCCAGCGTCCTTGCGGCACTCCACGCCCTCGGTGGCCTTGATCTGGTCC 136806 ||||||||||| | || ||||||||||| ||||| | | || |||| | || | Sbjct 521 TCGTCGATCACTGCCGCATCCTTGCGGCATTCCACATGCGCAGTCGCCTCGCGGTGCTGA 580 Query 136807 TCCAGGGTGAAGGTCGCCTTGGCCTGGGTCCGCGACATCGTCCGGCCCGCGCCGTGCGAG 136866 |||| |||| || || ||| || |||| ||| ||||| ||||| | Sbjct 581 GCCAGCGTGATCTGTGCACGCGCTGCGGTTCGGCTCATCACCCGTCCCGCACCGTGGCTG 640 Query 136867 CACGAGCAGAACGAGTCCGCATTGCCCTTGCCGCGCACGATGTAGGACTTGGCC--CCCA 136924 || ||| || || ||||| || |||||||||||| || || |||| Sbjct 641 CAGCTATGGAAGCTCTCTGCGTTGCCTAACCCACGCACGATGTAG--CTGCGCGTGCCCA 698 Query 136925 TCGAGCCGGGGATGATCCCGAACTGGTCCTTCTGCGCCGACACCGCGCCCTTGCGGGTCA 136984 | |||||| ||||| || | || | | | | || |||||||||||| ||||| | Sbjct 699 TGCTGCCGGGAATGATGCCCAGCTCGCCGGTACGTGCGCTCACCGCGCCCTTACGGGTGA 758 Query 136985 CGAAGACCCACTCGTCGAAGTGGAATTCCTTCTGGACGTAGTTGTGGTGGCAGTTCACCG 137044 | | |||| | ||| ||| |||| || ||||||||||||||||| |||| Sbjct 759 TCAGCAATTCCTCGCCATGGTGCGTCTCCCTCTGCACATAGTTGTGGTGGCAGTTGACCG 818 Query 137045 CTTCCTTGTCCGTCTTGAACGGCGGCAGGCCCGACGCCCGCATGGCCTCCAGGACCCGGA 137104 | ||| ||| || |||| |||||| | | | | |||| || ||| ||||| Sbjct 819 CCAGCTTCTCCAGCTGGAACTTCGGCAGAC--GGTGAC-GCATCTCCGCCAACACCCGCG 875 Query 137105 CCATCATCATCTCGCGGTTGATCCGCGCGAAGTCCTGGCCCCAGGCGACGGCTTCCACGT 137164 |||||||| || || || || ||| | ||||| |||| | || |||||||| | Sbjct 876 CCATCATCGCTTCACGATTTTCGCGTGCGTAATCCTGCGCCCACGACACCGCTTCCACAT 935 Query 137165 AGTCGTGGAACTCCGGCTCGCCTTCGCA-GAGCCAAGCAAGGTCCTTGTCCAGCGGCTTG 137223 | || | |||| ||||||||| | ||| || | || ||||||||||| || | | Sbjct 936 ACTCATCGAACAGCGGCTCGCCCT-GCATGAAGAAGGCCAGGTCCTTGTCGGGCAGATGA 994 Query 137224 C-GCCCGTCACGACGCAGCATCATCTCCTTG---GCCTTCTCGATGAAGATGCGGCCGAT 137279 |||| |||| || | || | || ||| |||||||||| | |||||| Sbjct 995 AAGCCCAGCACG-CGGTGTGCCAGTTGCTCACGCGCCCGCTCGATGAAGTAGGTGCCGAT 1053 Query 137280 GGTGTTGCCGACGCCGCGCGAGCCCGAGTGGAGCATCACCCAGAC-GCGCTGGTCCTCGT 137338 ||||||| ||| |||||||| ||| | ||||||||| || ||| |||| |||| Sbjct 1054 CAGGTTGCCGGTGCCACGCGAGCCGCTGTGCAACATCACCCACACCGCGTCGGTC-TCGT 1112 Query 137339 CGAGGCAGACCTCGATGAAGTGGTTGCCGCCGCCCAGGGTGCCCAGTTGGACCACGCTGT 137398 | || |||| |||||||||||||||||||||||||| ||||| | ||| ||||| Sbjct 1113 CCAGACAGAGTTCGATGAAGTGGTTGCCGCCGCCCAGCGTGCCGATCTGG--CACGC--- 1167 Query 137399 TGGCGTTCTTCAGCGCCGGGTACTTCTCGCAGAGCTTGTCGAACCGCGCCTCCAGGC-CC 137457 | | || | | ||| | | || | ||| | || ||| ||||||| | Sbjct 1168 --CAGCTTATCGGTG-CGGATGC-GCTTGTGCTGCTGCTTGA---TCGCTTCCAGGCGCT 1220 Query 137458 GAATC-GACCCACTTGCGCAGGATCGAGTTGGGGATGCCGCTGCGCCCGTTCCAGCCGCC 137516 | | | | ||| ||||| |||| || ||||| | | || ||| | | || Sbjct 1221 GCACCAGCCCCGACTGCGC--GATCCGCGTGTCGATGCTGTCGGGCAGGTTGC-GATGCT 1277 Query 137517 CGACGGACCCGGCC--CGCCGTGCGGGACGGCGTGCTCGATCAGCGAGCGAAGCTTGGAC 137574 || | | | ||||| |||| ||| ||| ||||||| ||||| || | | | Sbjct 1278 CG-CCGCCACGGCCGTTGCCGACCGGCACGCTACGCTCGATGCTGGAGCGCAGTTGCGCC 1336 Query 137575 AGGCTGTCGGGAAGGTCCGACGCGGTCAGGCTGGTGCGGACCGCCATCATGCCGCAGCCG 137634 ||| |||| || ||||| || |||| ||||||| ||||| ||||||||||||| Sbjct 1337 AGGTTGTCCGGCAGGTCGCTGGCACGCAGGGTGGTGCGCACCGCGGCCATGCCGCAGCCG 1396 Query 137635 ATGTCGACGCCGACGGCGGCCGGGATGATCGCGCC 137669 || || ||||| || |||||||||||||| || || Sbjct 1397 ATATCCACGCCAACCGCGGCCGGGATGATGGCACC 1431 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 690039736495200