Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414525.1_2020 15-10-27] 12,086 sequences; 74,456,230 total letters Query= NC_019406.1 Length=279967 Score E Sequences producing significant alignments: (Bits) Value seq5730 230 4e-55 seq4198 86.0 1e-11 >seq5730 Length=1907 Score = 230 bits (254), Expect = 4e-55 Identities = 736/1120 (66%), Gaps = 55/1120 (5%) Strand=Plus/Plus Query 168270 TAACCCTTGACGCACAACACCTGCTTGAGGGTGGCGACGATCTCCACCATTTCTTCCTGG 168329 || ||||||| ||||| |||||| || ||| | | || || | || | ||| Sbjct 419 TATCCCTTGATGCACACCACCTGGCGCAGCGTGTGCAGCACTTCGACAAGATCCTGCTGC 478 Query 168330 GCCGCCATGACGAGTTCGATCGGCTTGTAAGCCTTCGGCGTCTCGTCGATCACGCCTTCG 168389 || ||||| || ||||||| |||||| ||| |||| ||||||||||| | | Sbjct 479 GCGGCCATCACCGCCTCGATCGACTTGTATGCCGCTGGCGATTCGTCGATCACTGCCGCA 538 Query 168390 TCCTTGCGGCACTCGACGCCCTTCGTGGCTTCGACGTGCTCGTCCAGGGAGACGAGCTTC 168449 ||||||||||| || || | || || ||| ||||| |||| | || | Sbjct 539 TCCTTGCGGCATTCCACATGCGCAGTCGCCTCGCGGTGCTGAGCCAGCGTGATCTGTGCA 598 Query 168450 TTCGCCGCCGAACGCGACATGACGCGGCCGGCGCCGTGGCTGCACGAGCAGAAGGCGTCA 168509 ||| || | || ||| || || || || ||||||||||| |||| || Sbjct 599 CGCGCTGCGGTTCGGCTCATCACCCGTCCCGCACCGTGGCTGCAGCTATGGAAGCTCTCT 658 Query 168510 GCGTGGCCCTTGCCGCGCACGATGAACGACTTGGCG--CCCATCGAACCCGGAATGATGC 168567 |||| ||| || ||||||||| | || ||| ||||| || |||||||||| Sbjct 659 GCGTTGCCTAACCCACGCACGATGTAG--CTGCGCGTGCCCATGCTGCCGGGAATGATGC 716 Query 168568 CGAGTTCGTCCTTCTGCGCCGACACCGCGCCCTTGCGGGTCACGAAGATGTCCTCGCCGA 168627 | || ||| | | | || |||||||||||| ||||| | | | |||||||| Sbjct 717 CCAGCTCGCCGGTACGTGCGCTCACCGCGCCCTTACGGGTGATCAGCAATTCCTCGCCAT 776 Query 168628 AGTGGCGT-TCCTTGTTGACGTAGTTGTGGTGACAGTTCACCGCTTCCTTGTCGGTCTTG 168686 ||| ||| ||| | | || ||||||||||| ||||| ||||| ||| || || | Sbjct 777 GGTG-CGTCTCCCTCTGCACATAGTTGTGGTGGCAGTTGACCGCCAGCTTCTCCAGCTGG 835 Query 168687 AACGCCGGCACGAACTCCCGGATCGCCTTGAGCACGCGGACCATCATCATGTCGCGGTTC 168746 ||| ||||| | || ||| || | ||| || |||||||| || || || Sbjct 836 AACTTCGGCAGACGGTGACGCATCTCCGCCAACACCCGCGCCATCATCGCTTCACGATTT 895 Query 168747 AGGCGCGCGAAGTCTTGCGCCCAGCCCACGGCTTCGATGTAGTCGTCGAAATCCTGCTCG 168806 ||| ||| | || |||||||| ||| ||||| | || || ||||| | ||||| Sbjct 896 TCGCGTGCGTAATCCTGCGCCCACGACACCGCTTCCACATACTCATCGAACAGCGGCTCG 955 Query 168807 CCCACTTCGAGCCACGCGAGGTTCTCGTCCTGCGG------GCGCACATGGCGCTTTGCC 168860 ||| || | || |||| || ||| || | || || ||| | |||| Sbjct 956 CCCTGCATGAAGAAGGCCAGGTCCTTGTCGGGCAGATGAAAGCCCAGCACGCGGTGTGCC 1015 Query 168861 AGGGCGTTCTTCGCCTTCTCGATGAAGTAGTTGCCGATCACGTTGCCGACGCCGCGCGAT 168920 || | |||| ||||||||||||| ||||||||| ||||||| ||| ||||| Sbjct 1016 AGTTGCTCACGCGCCCGCTCGATGAAGTAGGTGCCGATCAGGTTGCCGGTGCCACGCGAG 1075 Query 168921 CCCGAGTGCAGCATCACCCACACGTTCGGGTCCGTCGTCCCCTGATCGGTCTGGATGCAG 168980 || ||||| |||||||||||| || ||| ||| ||| || || ||| Sbjct 1076 CCGCTGTGCAACATCACCCACAC---CGCGTCGGTC---------TCG-TCCAGA--CAG 1120 Query 168981 ATTTCGATGAAGTGGTTGCCGCCACCCAGCGACCCGAGTTGGGTCACGTTGTTCGACGTC 169040 | ||||||||||||||||||||| ||||||| |||| ||| |||| | | | Sbjct 1121 AGTTCGATGAAGTGGTTGCCGCCGCCCAGCGTGCCGATCTGG--CACGC----CAGCTTA 1174 Query 169041 TCCAAGATCGGATGCTTTTCGCACAGCTTCTTGAACCGCGCCTCCAGCC-CAGAATCGAT 169099 || | ||||||| || | | ||| ||||| | || ||||| | | | | | Sbjct 1175 TCGGTG--CGGATGCGCTT-GTGCTGCTGCTTGATC---GCTTCCAGGCGCTGCACCAGC 1228 Query 169100 CCAGGCACGCATGATA-GAGT-TCGGGATGCCATGACGACCCGGTTCCTGCCACGAACCC 169157 || | | || ||| | || ||| |||| || || | |||| || | | | | Sbjct 1229 CCCGACT-GCGCGATCCGCGTGTCG--ATGC--TGTCGGGCAGGTT---GCGATGCTCGC 1280 Query 169158 TTCGCGCCCGGCCC--GCCGTGCGGAACCGCACGTTCGATCGCCGAACGCATCGCCGCCA 169215 ||| | ||||| |||| ||| || ||| ||||| || |||| ||||| Sbjct 1281 --CGC-CACGGCCGTTGCCGACCGGCACGCTACGCTCGATGCTGGAGCGCAGTTGCGCCA 1337 Query 169216 AGTTGTCCGGCAGTTGCGAAGCAGTCAGCGTGGTGCGCACAGCCATCATGCCGCAGCCGA 169275 |||||||||||| | ||| ||| ||||||||||| || |||||||||||||| Sbjct 1338 GGTTGTCCGGCAGGTCGCTGGCACGCAGGGTGGTGCGCACCGCGGCCATGCCGCAGCCGA 1397 Query 169276 TGTCGACGCCGACCGCGTACGGGATCACCGCATCCTTGGTCGGGATCACCGAACCAACGG 169335 | || ||||| |||||| |||||| | ||| | ||||||||||||||| || |||| Sbjct 1398 TATCCACGCCAACCGCGGCCGGGATGATGGCACCGCGGGTCGGGATCACCGAGCCCACGG 1457 Query 169336 CTGCGCCGTACCCGGCGTGGACGTCGGGCATCACCGCGAC 169375 |||||| | || ||| ||||||||||||||||| || Sbjct 1458 TTGCGCCCTTGCCCAGGTGCACGTCGGGCATCACCGCCAC 1497 >seq4198 Length=2793 Score = 86.0 bits (94), Expect = 1e-11 Identities = 64/75 (85%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 132959 TGATGCGGGGTGGAGCAGTCCGGTAGCTCGTTTGGCTCATAACCAAAAGGTCGAGGGTTC 133018 || ||||||||||||||||| || ||||||| ||||||||||| ||||||| ||||| Sbjct 2593 TGCTGCGGGGTGGAGCAGTCTGGCAGCTCGTCGGGCTCATAACCCGAAGGTCGCAGGTTC 2652 Query 133019 AAATCCCTCCCCCGC 133033 |||||| ||||||| Sbjct 2653 AAATCCTGCCCCCGC 2667 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 895631072091120