Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414525.1_2020 15-10-27] 12,086 sequences; 74,456,230 total letters Query= NC_019407.1 Length=218929 Score E Sequences producing significant alignments: (Bits) Value seq5730 190 3e-43 >seq5730 Length=1907 Score = 190 bits (210), Expect = 3e-43 Identities = 654/995 (66%), Gaps = 36/995 (4%) Strand=Plus/Plus Query 135447 TCCACGAGGTCCTTCTGGGCCTCCATGACCGCGTCGATGTCCTTGTAGGCCATCGGGATT 135506 || || || |||| ||| || |||| ||||| ||||| |||||| ||| || | Sbjct 461 TCGACAAGATCCTGCTGCGCGGCCATCACCGCCTCGATCGACTTGTATGCCGCTGGCGAT 520 Query 135507 TCGTCGATCACGCCAGCGTCCTTACGGCACTCCACGCCCTCGGTGGCCTTGATCTGGTCC 135566 ||||||||||| | || ||||| ||||| ||||| | | || |||| | || | Sbjct 521 TCGTCGATCACTGCCGCATCCTTGCGGCATTCCACATGCGCAGTCGCCTCGCGGTGCTGA 580 Query 135567 TCCAGGGTGAAGGTCGCCTTGGCCTGGGTCCGCGACATCGTCCGGCCCGCGCCGTGCGAG 135626 |||| |||| || || ||| || |||| ||| ||||| ||||| | Sbjct 581 GCCAGCGTGATCTGTGCACGCGCTGCGGTTCGGCTCATCACCCGTCCCGCACCGTGGCTG 640 Query 135627 CACGAGCAGAACGAGTCCGCATTGCCCTTGCCGCGCACGATGTAGGACTTGGCC--CCCA 135684 || ||| || || ||||| || |||||||||||| || || |||| Sbjct 641 CAGCTATGGAAGCTCTCTGCGTTGCCTAACCCACGCACGATGTAG--CTGCGCGTGCCCA 698 Query 135685 TCGAGCCGGGGATGATCCCGAACTGGTCCTTCTGCGCCGACACCGCGCCCTTGCGGGTCA 135744 | |||||| ||||| || | || | | | | || |||||||||||| ||||| | Sbjct 699 TGCTGCCGGGAATGATGCCCAGCTCGCCGGTACGTGCGCTCACCGCGCCCTTACGGGTGA 758 Query 135745 CGAAGACCCACTCGTCGAAGTGGAATTCCTTCTGGACGTAGTTGTGGTGGCAGTTCACCG 135804 | | |||| | ||| ||| |||| || ||||||||||||||||| |||| Sbjct 759 TCAGCAATTCCTCGCCATGGTGCGTCTCCCTCTGCACATAGTTGTGGTGGCAGTTGACCG 818 Query 135805 CTTCCTTGTCCGTCTTGAACGGCGGCAGGCCCGACGCCCGCATGGCCTCCAGGACCCGGA 135864 | ||| ||| || |||| |||||| | | | | |||| || ||| ||||| Sbjct 819 CCAGCTTCTCCAGCTGGAACTTCGGCAGAC--GGTGAC-GCATCTCCGCCAACACCCGCG 875 Query 135865 CCATCATCATCTCGCGGTTGATCCGCGCGAAGTCCTGGCCCCAGGCGACGGCTTCCACGT 135924 |||||||| || || || || ||| | ||||| |||| | || |||||||| | Sbjct 876 CCATCATCGCTTCACGATTTTCGCGTGCGTAATCCTGCGCCCACGACACCGCTTCCACAT 935 Query 135925 AGTCGTGGAACTCCGGTTCGCCTTCGCA-GAGCCAAGCAAGGTCCTTGTCCAGCGGCTTG 135983 | || | |||| ||| ||||| | ||| || | || ||||||||||| || | | Sbjct 936 ACTCATCGAACAGCGGCTCGCCCT-GCATGAAGAAGGCCAGGTCCTTGTCGGGCAGATGA 994 Query 135984 C-GCCCGTCACGCCGCAG--CATCATCTCCTTGGCCTTCTCGATGAAGATACG-GCCGAT 136039 |||| ||||| | || ||| ||| |||||||||| || | |||||| Sbjct 995 AAGCCCAGCACGCGGTGTGCCAGTTGCTCACGCGCCCGCTCGATGAAG-TAGGTGCCGAT 1053 Query 136040 GGTGTTGCCGACGCCGCGCGAGCCCGAGTGGAGCATCACCCAGAC-GCGCTGGTCCTCGT 136098 ||||||| ||| |||||||| ||| | ||||||||| || ||| |||| |||| Sbjct 1054 CAGGTTGCCGGTGCCACGCGAGCCGCTGTGCAACATCACCCACACCGCGTCGGTC-TCGT 1112 Query 136099 CGAGGCAGACCTCGATGAAGTGGTTGCCGCCGCCCAGGGTGCCCAGTTGGACCACGCTGT 136158 | || |||| |||||||||||||||||||||||||| ||||| | ||| ||||| Sbjct 1113 CCAGACAGAGTTCGATGAAGTGGTTGCCGCCGCCCAGCGTGCCGATCTGG--CACGC--- 1167 Query 136159 TGGCGTTCTTCAGCGCCGGGTACTTCTCGCAGAGCTTGTCGAACCGCGCCTCCAGGCCC- 136217 | | || | | ||| | | || | ||| | || ||| ||||||| | Sbjct 1168 --CAGCTTATCGGTG-CGGATGC-GCTTGTGCTGCTGCTTGA---TCGCTTCCAGGCGCT 1220 Query 136218 -GAGTCGACCCACTTGCGCAGGATCGAGTTGGGGATGCCGCTGCGCCCGTTCCAGCCGCC 136276 | | ||| ||||| |||| || ||||| | | || ||| | | || Sbjct 1221 GCACCAGCCCCGACTGCGC--GATCCGCGTGTCGATGCTGTCGGGCAGGTTGC-GATGCT 1277 Query 136277 CGACGGACCCGGCC--CGCCGTGCGGGACGGCGTGCTCGATCAGCGAGCGAAGCTTGGAC 136334 || | | | ||||| |||| ||| ||| ||||||| ||||| || | | | Sbjct 1278 CG-CCGCCACGGCCGTTGCCGACCGGCACGCTACGCTCGATGCTGGAGCGCAGTTGCGCC 1336 Query 136335 AGGCTGTCGGGAAGGTCCGACGCGGTCAGGCTGGTGCGGACCGCCATCATGCCGCAGCCG 136394 ||| |||| || ||||| || |||| ||||||| ||||| ||||||||||||| Sbjct 1337 AGGTTGTCCGGCAGGTCGCTGGCACGCAGGGTGGTGCGCACCGCGGCCATGCCGCAGCCG 1396 Query 136395 ATGTCGACGCCGACGGCGGCCGGGATGATCGCGCC 136429 || || ||||| || |||||||||||||| || || Sbjct 1397 ATATCCACGCCAACCGCGGCCGGGATGATGGCACC 1431 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 700338980301840