Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414525.1_2020
15-10-27] 12,086 sequences; 74,456,230 total letters
Query= NC_019407.1
Length=218929
Score E
Sequences producing significant alignments: (Bits) Value
seq5730 190 3e-43
>seq5730
Length=1907
Score = 190 bits (210), Expect = 3e-43
Identities = 654/995 (66%), Gaps = 36/995 (4%)
Strand=Plus/Plus
Query 135447 TCCACGAGGTCCTTCTGGGCCTCCATGACCGCGTCGATGTCCTTGTAGGCCATCGGGATT 135506
|| || || |||| ||| || |||| ||||| ||||| |||||| ||| || |
Sbjct 461 TCGACAAGATCCTGCTGCGCGGCCATCACCGCCTCGATCGACTTGTATGCCGCTGGCGAT 520
Query 135507 TCGTCGATCACGCCAGCGTCCTTACGGCACTCCACGCCCTCGGTGGCCTTGATCTGGTCC 135566
||||||||||| | || ||||| ||||| ||||| | | || |||| | || |
Sbjct 521 TCGTCGATCACTGCCGCATCCTTGCGGCATTCCACATGCGCAGTCGCCTCGCGGTGCTGA 580
Query 135567 TCCAGGGTGAAGGTCGCCTTGGCCTGGGTCCGCGACATCGTCCGGCCCGCGCCGTGCGAG 135626
|||| |||| || || ||| || |||| ||| ||||| ||||| |
Sbjct 581 GCCAGCGTGATCTGTGCACGCGCTGCGGTTCGGCTCATCACCCGTCCCGCACCGTGGCTG 640
Query 135627 CACGAGCAGAACGAGTCCGCATTGCCCTTGCCGCGCACGATGTAGGACTTGGCC--CCCA 135684
|| ||| || || ||||| || |||||||||||| || || ||||
Sbjct 641 CAGCTATGGAAGCTCTCTGCGTTGCCTAACCCACGCACGATGTAG--CTGCGCGTGCCCA 698
Query 135685 TCGAGCCGGGGATGATCCCGAACTGGTCCTTCTGCGCCGACACCGCGCCCTTGCGGGTCA 135744
| |||||| ||||| || | || | | | | || |||||||||||| ||||| |
Sbjct 699 TGCTGCCGGGAATGATGCCCAGCTCGCCGGTACGTGCGCTCACCGCGCCCTTACGGGTGA 758
Query 135745 CGAAGACCCACTCGTCGAAGTGGAATTCCTTCTGGACGTAGTTGTGGTGGCAGTTCACCG 135804
| | |||| | ||| ||| |||| || ||||||||||||||||| ||||
Sbjct 759 TCAGCAATTCCTCGCCATGGTGCGTCTCCCTCTGCACATAGTTGTGGTGGCAGTTGACCG 818
Query 135805 CTTCCTTGTCCGTCTTGAACGGCGGCAGGCCCGACGCCCGCATGGCCTCCAGGACCCGGA 135864
| ||| ||| || |||| |||||| | | | | |||| || ||| |||||
Sbjct 819 CCAGCTTCTCCAGCTGGAACTTCGGCAGAC--GGTGAC-GCATCTCCGCCAACACCCGCG 875
Query 135865 CCATCATCATCTCGCGGTTGATCCGCGCGAAGTCCTGGCCCCAGGCGACGGCTTCCACGT 135924
|||||||| || || || || ||| | ||||| |||| | || |||||||| |
Sbjct 876 CCATCATCGCTTCACGATTTTCGCGTGCGTAATCCTGCGCCCACGACACCGCTTCCACAT 935
Query 135925 AGTCGTGGAACTCCGGTTCGCCTTCGCA-GAGCCAAGCAAGGTCCTTGTCCAGCGGCTTG 135983
| || | |||| ||| ||||| | ||| || | || ||||||||||| || | |
Sbjct 936 ACTCATCGAACAGCGGCTCGCCCT-GCATGAAGAAGGCCAGGTCCTTGTCGGGCAGATGA 994
Query 135984 C-GCCCGTCACGCCGCAG--CATCATCTCCTTGGCCTTCTCGATGAAGATACG-GCCGAT 136039
|||| ||||| | || ||| ||| |||||||||| || | ||||||
Sbjct 995 AAGCCCAGCACGCGGTGTGCCAGTTGCTCACGCGCCCGCTCGATGAAG-TAGGTGCCGAT 1053
Query 136040 GGTGTTGCCGACGCCGCGCGAGCCCGAGTGGAGCATCACCCAGAC-GCGCTGGTCCTCGT 136098
||||||| ||| |||||||| ||| | ||||||||| || ||| |||| ||||
Sbjct 1054 CAGGTTGCCGGTGCCACGCGAGCCGCTGTGCAACATCACCCACACCGCGTCGGTC-TCGT 1112
Query 136099 CGAGGCAGACCTCGATGAAGTGGTTGCCGCCGCCCAGGGTGCCCAGTTGGACCACGCTGT 136158
| || |||| |||||||||||||||||||||||||| ||||| | ||| |||||
Sbjct 1113 CCAGACAGAGTTCGATGAAGTGGTTGCCGCCGCCCAGCGTGCCGATCTGG--CACGC--- 1167
Query 136159 TGGCGTTCTTCAGCGCCGGGTACTTCTCGCAGAGCTTGTCGAACCGCGCCTCCAGGCCC- 136217
| | || | | ||| | | || | ||| | || ||| ||||||| |
Sbjct 1168 --CAGCTTATCGGTG-CGGATGC-GCTTGTGCTGCTGCTTGA---TCGCTTCCAGGCGCT 1220
Query 136218 -GAGTCGACCCACTTGCGCAGGATCGAGTTGGGGATGCCGCTGCGCCCGTTCCAGCCGCC 136276
| | ||| ||||| |||| || ||||| | | || ||| | | ||
Sbjct 1221 GCACCAGCCCCGACTGCGC--GATCCGCGTGTCGATGCTGTCGGGCAGGTTGC-GATGCT 1277
Query 136277 CGACGGACCCGGCC--CGCCGTGCGGGACGGCGTGCTCGATCAGCGAGCGAAGCTTGGAC 136334
|| | | | ||||| |||| ||| ||| ||||||| ||||| || | | |
Sbjct 1278 CG-CCGCCACGGCCGTTGCCGACCGGCACGCTACGCTCGATGCTGGAGCGCAGTTGCGCC 1336
Query 136335 AGGCTGTCGGGAAGGTCCGACGCGGTCAGGCTGGTGCGGACCGCCATCATGCCGCAGCCG 136394
||| |||| || ||||| || |||| ||||||| ||||| |||||||||||||
Sbjct 1337 AGGTTGTCCGGCAGGTCGCTGGCACGCAGGGTGGTGCGCACCGCGGCCATGCCGCAGCCG 1396
Query 136395 ATGTCGACGCCGACGGCGGCCGGGATGATCGCGCC 136429
|| || ||||| || |||||||||||||| || ||
Sbjct 1397 ATATCCACGCCAACCGCGGCCGGGATGATGGCACC 1431
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 700338980301840
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