Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414525.1_2020
15-10-27] 12,086 sequences; 74,456,230 total letters
Query= NC_019408.1
Length=223720
Score E
Sequences producing significant alignments: (Bits) Value
seq5730 282 6e-71
>seq5730
Length=1907
Score = 282 bits (312), Expect = 6e-71
Identities = 657/964 (68%), Gaps = 50/964 (5%)
Strand=Plus/Plus
Query 139617 TCGGCGTTGCCCTTGCCGCGCACGATGTAGGACTTGGCC--CCCATCGAGCCGGGGATGA 139674
|| |||||||| || |||||||||||| || || ||||| |||||| ||||
Sbjct 656 TCTGCGTTGCCTAACCCACGCACGATGTAG--CTGCGCGTGCCCATGCTGCCGGGAATGA 713
Query 139675 TGCCGAACTGGTCCTTCTGAGCCGACACCGCGCCCTTGCGGGTCACGAAGACCCACTCGT 139734
|||| | || | | | | || |||||||||||| ||||| | | | ||||
Sbjct 714 TGCCCAGCTCGCCGGTACGTGCGCTCACCGCGCCCTTACGGGTGATCAGCAATTCCTCGC 773
Query 139735 CGAAGTGGAACTCCTTCTGGACGTAGTTGTGGTGGCAGTTCACCGCTTCCTTGTCCGTCT 139794
| ||| |||| |||| || ||||||||||||||||| ||||| ||| ||| ||
Sbjct 774 CATGGTGCGTCTCCCTCTGCACATAGTTGTGGTGGCAGTTGACCGCCAGCTTCTCCAGCT 833
Query 139795 TGAAGGGCGGCAGGCCCGAGGCG-CGCATGGCGTCCAGGACCCGGATCATCATCATCTCG 139853
||| |||||| | || | ||||| | ||| ||||| ||||||| ||
Sbjct 834 GGAACTTCGGCAGAC----GGTGACGCATCTCCGCCAACACCCGCGCCATCATCGCTTCA 889
Query 139854 CGGTTGATCCGCGCGAAGTCCTGACCCCAGGCGACGGCTTCCACGTAGTCGTAGAATTCC 139913
|| || || ||| | ||||| |||| | || |||||||| || || | ||| |
Sbjct 890 CGATTTTCGCGTGCGTAATCCTGCGCCCACGACACCGCTTCCACATACTCATCGAACAGC 949
Query 139914 GGCTCGCCTTCCGACAGCCACGCGAGGTCCTTGTCGAGCGGCTTCTGACCGTCCCG-ACG 139972
|||||||| | | | | || |||||||||||| || | | || | || | |||
Sbjct 950 GGCTCGCCCTGCATGAAGAAGGCCAGGTCCTTGTCGGGCAGAT---GAAAGCCCAGCACG 1006
Query 139973 CAGCAT--CATCTCCTTG---GCCTTCTCGATGAAGATACG-GCCGATGGTGTTGCCGAC 140026
| | | || | || ||| |||||||||| || | |||||| |||||||
Sbjct 1007 CGGTGTGCCAGTTGCTCACGCGCCCGCTCGATGAAG-TAGGTGCCGATCAGGTTGCCGGT 1065
Query 140027 GCCGCGCGAGCCCGAGTGGAGCATCACCCAGAC-GCGCTGGTCCTCGTCGAGGCAGACCT 140085
||| |||||||| ||| | ||||||||| || ||| |||| ||||| || |||| |
Sbjct 1066 GCCACGCGAGCCGCTGTGCAACATCACCCACACCGCGTCGGTC-TCGTCCAGACAGAGTT 1124
Query 140086 CGATGAAGTGGTTGCCGCCGCCCAGCGTGCCCAGTTGG-ACGAC-GCTGTTGGCGTTCTT 140143
||||||||||||||||||||||||||||||| | ||| ||| | ||| | | || |
Sbjct 1125 CGATGAAGTGGTTGCCGCCGCCCAGCGTGCCGATCTGGCACGCCAGCTTATCG-GTGCG- 1182
Query 140144 GAGGGTCTTGTACTTGTCGCAGAGCTTCTCGAACCGGGCTTCCAGGCCCGAGTCGACCCA 140203
|| | ||||| || ||| || || | |||||||||| | | | ||
Sbjct 1183 GATGCGCTTGTGCT---------GCTGCTTGATC---GCTTCCAGGCGCTGCACCAGCCC 1230
Query 140204 CT--TGCGCATGATC-GAGT-TCGGGATGCCGCTACGCCCGTTCCAGCCGCCCGACGGAC 140259
| ||||| |||| | || ||| |||| | || ||| | | || || || |
Sbjct 1231 CGACTGCGC--GATCCGCGTGTCG--ATGCTGTCGGGCAGGTTGC-GATGCTCGCCGC-C 1284
Query 140260 CCGGCCC--GCCGTGCGGGACGGCGTGCTCGATCAGCGAGCGCAGCTTGGCGAGGCTGTC 140317
||||| |||| ||| ||| ||||||| |||||||| | || ||| ||||
Sbjct 1285 ACGGCCGTTGCCGACCGGCACGCTACGCTCGATGCTGGAGCGCAGTTGCGCCAGGTTGTC 1344
Query 140318 GGGCAGGTCCGAGGCCTTCAGCGAGGTGCGCACGGCCATCATGCCGCAGCCGATGTCCAC 140377
|||||||| ||| ||| | ||||||||| || ||||||||||||||| |||||
Sbjct 1345 CGGCAGGTCGCTGGCACGCAGGGTGGTGCGCACCGCGGCCATGCCGCAGCCGATATCCAC 1404
Query 140378 GCCCACGGCCGCCGGGATGATGGCGCCCTTGGTCGGGATCACCGAGCCCACGGTCGAGCC 140437
||| || || |||||||||||||| || |||||||||||||||||||||||| | |||
Sbjct 1405 GCCAACCGCGGCCGGGATGATGGCACCGCGGGTCGGGATCACCGAGCCCACGGTTGCGCC 1464
Query 140438 GATGCCCATGTGGACGTCCGGCATCAGGGCCACATGCGAGTGGATGAACGGCAGGGCGGC 140497
|||||| ||| ||||| ||||||| ||||| || || ||||| | ||||||
Sbjct 1465 CTTGCCCAGGTGCACGTCGGGCATCACCGCCACCCACGGCCCGACAAACGGGACGGCGGC 1524
Query 140498 GAGGTTGTGCGCCTGCACCTGGGCGGGCTGCTCGAAGGTCACACCCCGGACCCAGGCCTT 140557
|| ||| || |||| | || || | | || | | ||| || || |||||| ||||
Sbjct 1525 GATATTGCGCAACTGCGCATGCGCCTGTTCTTCCAGCGGCACGCCGCGCACCCAGCCCTT 1584
Query 140558 GATC 140561
||||
Sbjct 1585 GATC 1588
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 715667864140800
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