Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414525.1_2020 15-10-27] 12,086 sequences; 74,456,230 total letters Query= NC_019408.1 Length=223720 Score E Sequences producing significant alignments: (Bits) Value seq5730 282 6e-71 >seq5730 Length=1907 Score = 282 bits (312), Expect = 6e-71 Identities = 657/964 (68%), Gaps = 50/964 (5%) Strand=Plus/Plus Query 139617 TCGGCGTTGCCCTTGCCGCGCACGATGTAGGACTTGGCC--CCCATCGAGCCGGGGATGA 139674 || |||||||| || |||||||||||| || || ||||| |||||| |||| Sbjct 656 TCTGCGTTGCCTAACCCACGCACGATGTAG--CTGCGCGTGCCCATGCTGCCGGGAATGA 713 Query 139675 TGCCGAACTGGTCCTTCTGAGCCGACACCGCGCCCTTGCGGGTCACGAAGACCCACTCGT 139734 |||| | || | | | | || |||||||||||| ||||| | | | |||| Sbjct 714 TGCCCAGCTCGCCGGTACGTGCGCTCACCGCGCCCTTACGGGTGATCAGCAATTCCTCGC 773 Query 139735 CGAAGTGGAACTCCTTCTGGACGTAGTTGTGGTGGCAGTTCACCGCTTCCTTGTCCGTCT 139794 | ||| |||| |||| || ||||||||||||||||| ||||| ||| ||| || Sbjct 774 CATGGTGCGTCTCCCTCTGCACATAGTTGTGGTGGCAGTTGACCGCCAGCTTCTCCAGCT 833 Query 139795 TGAAGGGCGGCAGGCCCGAGGCG-CGCATGGCGTCCAGGACCCGGATCATCATCATCTCG 139853 ||| |||||| | || | ||||| | ||| ||||| ||||||| || Sbjct 834 GGAACTTCGGCAGAC----GGTGACGCATCTCCGCCAACACCCGCGCCATCATCGCTTCA 889 Query 139854 CGGTTGATCCGCGCGAAGTCCTGACCCCAGGCGACGGCTTCCACGTAGTCGTAGAATTCC 139913 || || || ||| | ||||| |||| | || |||||||| || || | ||| | Sbjct 890 CGATTTTCGCGTGCGTAATCCTGCGCCCACGACACCGCTTCCACATACTCATCGAACAGC 949 Query 139914 GGCTCGCCTTCCGACAGCCACGCGAGGTCCTTGTCGAGCGGCTTCTGACCGTCCCG-ACG 139972 |||||||| | | | | || |||||||||||| || | | || | || | ||| Sbjct 950 GGCTCGCCCTGCATGAAGAAGGCCAGGTCCTTGTCGGGCAGAT---GAAAGCCCAGCACG 1006 Query 139973 CAGCAT--CATCTCCTTG---GCCTTCTCGATGAAGATACG-GCCGATGGTGTTGCCGAC 140026 | | | || | || ||| |||||||||| || | |||||| ||||||| Sbjct 1007 CGGTGTGCCAGTTGCTCACGCGCCCGCTCGATGAAG-TAGGTGCCGATCAGGTTGCCGGT 1065 Query 140027 GCCGCGCGAGCCCGAGTGGAGCATCACCCAGAC-GCGCTGGTCCTCGTCGAGGCAGACCT 140085 ||| |||||||| ||| | ||||||||| || ||| |||| ||||| || |||| | Sbjct 1066 GCCACGCGAGCCGCTGTGCAACATCACCCACACCGCGTCGGTC-TCGTCCAGACAGAGTT 1124 Query 140086 CGATGAAGTGGTTGCCGCCGCCCAGCGTGCCCAGTTGG-ACGAC-GCTGTTGGCGTTCTT 140143 ||||||||||||||||||||||||||||||| | ||| ||| | ||| | | || | Sbjct 1125 CGATGAAGTGGTTGCCGCCGCCCAGCGTGCCGATCTGGCACGCCAGCTTATCG-GTGCG- 1182 Query 140144 GAGGGTCTTGTACTTGTCGCAGAGCTTCTCGAACCGGGCTTCCAGGCCCGAGTCGACCCA 140203 || | ||||| || ||| || || | |||||||||| | | | || Sbjct 1183 GATGCGCTTGTGCT---------GCTGCTTGATC---GCTTCCAGGCGCTGCACCAGCCC 1230 Query 140204 CT--TGCGCATGATC-GAGT-TCGGGATGCCGCTACGCCCGTTCCAGCCGCCCGACGGAC 140259 | ||||| |||| | || ||| |||| | || ||| | | || || || | Sbjct 1231 CGACTGCGC--GATCCGCGTGTCG--ATGCTGTCGGGCAGGTTGC-GATGCTCGCCGC-C 1284 Query 140260 CCGGCCC--GCCGTGCGGGACGGCGTGCTCGATCAGCGAGCGCAGCTTGGCGAGGCTGTC 140317 ||||| |||| ||| ||| ||||||| |||||||| | || ||| |||| Sbjct 1285 ACGGCCGTTGCCGACCGGCACGCTACGCTCGATGCTGGAGCGCAGTTGCGCCAGGTTGTC 1344 Query 140318 GGGCAGGTCCGAGGCCTTCAGCGAGGTGCGCACGGCCATCATGCCGCAGCCGATGTCCAC 140377 |||||||| ||| ||| | ||||||||| || ||||||||||||||| ||||| Sbjct 1345 CGGCAGGTCGCTGGCACGCAGGGTGGTGCGCACCGCGGCCATGCCGCAGCCGATATCCAC 1404 Query 140378 GCCCACGGCCGCCGGGATGATGGCGCCCTTGGTCGGGATCACCGAGCCCACGGTCGAGCC 140437 ||| || || |||||||||||||| || |||||||||||||||||||||||| | ||| Sbjct 1405 GCCAACCGCGGCCGGGATGATGGCACCGCGGGTCGGGATCACCGAGCCCACGGTTGCGCC 1464 Query 140438 GATGCCCATGTGGACGTCCGGCATCAGGGCCACATGCGAGTGGATGAACGGCAGGGCGGC 140497 |||||| ||| ||||| ||||||| ||||| || || ||||| | |||||| Sbjct 1465 CTTGCCCAGGTGCACGTCGGGCATCACCGCCACCCACGGCCCGACAAACGGGACGGCGGC 1524 Query 140498 GAGGTTGTGCGCCTGCACCTGGGCGGGCTGCTCGAAGGTCACACCCCGGACCCAGGCCTT 140557 || ||| || |||| | || || | | || | | ||| || || |||||| |||| Sbjct 1525 GATATTGCGCAACTGCGCATGCGCCTGTTCTTCCAGCGGCACGCCGCGCACCCAGCCCTT 1584 Query 140558 GATC 140561 |||| Sbjct 1585 GATC 1588 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 715667864140800