Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414525.1_2020 15-10-27] 12,086 sequences; 74,456,230 total letters Query= NC_019410.1 Length=221828 Score E Sequences producing significant alignments: (Bits) Value seq5730 179 5e-40 >seq5730 Length=1907 Score = 179 bits (198), Expect = 5e-40 Identities = 615/935 (66%), Gaps = 34/935 (4%) Strand=Plus/Plus Query 137305 TTCGTCGATCACGCCGGCGTCCTTGCGGCACTCCACGCCCTCGGTGGCCTTGATCTGGTC 137364 |||||||||||| | || ||||||||||| ||||| | | || |||| | || | Sbjct 520 TTCGTCGATCACTGCCGCATCCTTGCGGCATTCCACATGCGCAGTCGCCTCGCGGTGCTG 579 Query 137365 CTCCAGAGTGAAGGTCGCCTTGGCCTGGGTCCGCGACATCGTCCGGCCCGCGCCGTGCGA 137424 |||| |||| || || ||| || |||| ||| ||||| ||||| Sbjct 580 AGCCAGCGTGATCTGTGCACGCGCTGCGGTTCGGCTCATCACCCGTCCCGCACCGTGGCT 639 Query 137425 GCACGAGCAGAACGAGTCCGCATTGCCCTTGCCGCGCACGATGTAGGACTTGGCC--CCC 137482 ||| ||| || || ||||| || |||||||||||| || || ||| Sbjct 640 GCAGCTATGGAAGCTCTCTGCGTTGCCTAACCCACGCACGATGTAG--CTGCGCGTGCCC 697 Query 137483 ATCGAGCCGGGGATGATCCCGAACTGGTCCTTCTGCGCCGACACCGCGCCCTTGCGGGTC 137542 || |||||| ||||| || | || | | | | || |||||||||||| ||||| Sbjct 698 ATGCTGCCGGGAATGATGCCCAGCTCGCCGGTACGTGCGCTCACCGCGCCCTTACGGGTG 757 Query 137543 ACGAAGACCCACTCGTCGAAGTGGAATTCCTTCTGGACGTAGTTGTGGTGGCAGTTCACC 137602 | | | |||| | ||| ||| |||| || ||||||||||||||||| ||| Sbjct 758 ATCAGCAATTCCTCGCCATGGTGCGTCTCCCTCTGCACATAGTTGTGGTGGCAGTTGACC 817 Query 137603 GCTTCCTTGTCCGTCTTGAACGGCGGCAGGCCCGACGCCCGCATGGCCTCCAGGACCCGG 137662 || ||| ||| || |||| |||||| | | | | |||| || ||| ||||| Sbjct 818 GCCAGCTTCTCCAGCTGGAACTTCGGCAGAC--GGTGAC-GCATCTCCGCCAACACCCGC 874 Query 137663 ACCATCATCATCTCGCGGTTGATCCGCGCGAAGTCCTGGCCCCAGGCGACGGCTTCCACG 137722 |||||||| || || || || ||| | ||||| |||| | || |||||||| Sbjct 875 GCCATCATCGCTTCACGATTTTCGCGTGCGTAATCCTGCGCCCACGACACCGCTTCCACA 934 Query 137723 TAGTCGTGGAACTCCGGCTCGCCTTCGCA-GAGCCAAGCAAGGTCCTTGTCCAGCGGCTT 137781 || || | |||| ||||||||| | ||| || | || ||||||||||| || | | Sbjct 935 TACTCATCGAACAGCGGCTCGCCCT-GCATGAAGAAGGCCAGGTCCTTGTCGGGCAGATG 993 Query 137782 GC-GCCCGTCACG--GCGCAGCATCATCTCCTTGGCCTTCTCGATGAAGATGCGGCCGAT 137838 |||| |||| | | || ||| ||| |||||||||| | |||||| Sbjct 994 AAAGCCCAGCACGCGGTGTGCCAGTTGCTCACGCGCCCGCTCGATGAAGTAGGTGCCGAT 1053 Query 137839 GGTGTTGCCGACGCCGCGCGAGCCCGAGTGGAGCATCACCCAGAC-GCGCTGATCCTCGT 137897 ||||||| ||| |||||||| ||| | ||||||||| || ||| | || |||| Sbjct 1054 CAGGTTGCCGGTGCCACGCGAGCCGCTGTGCAACATCACCCACACCGCGTCGGTC-TCGT 1112 Query 137898 CGAGGCAGACCTCGATGAAGTGGTTGCCGCCGCCCAGGGTGCCCAGTTGGACCACGCTGT 137957 | || |||| |||||||||||||||||||||||||| ||||| | ||| ||||| Sbjct 1113 CCAGACAGAGTTCGATGAAGTGGTTGCCGCCGCCCAGCGTGCCGATCTGG--CACGC--- 1167 Query 137958 TGGCGTTCTTCAGCGCCGGGTACTTCTCGCAGAGCTTGTCGAACCGCGCCTCCAGGC-CC 138016 | | || | | ||| | | || | ||| | || ||| ||||||| | Sbjct 1168 --CAGCTTATCGGTG-CGGATGC-GCTTGTGCTGCTGCTTGA---TCGCTTCCAGGCGCT 1220 Query 138017 GAATC-GACCCACTTGCGCAGGATCGAGTTGGGGATGCCGCTGCGCCCGTTCCAGCCGCC 138075 | | | | ||| ||||| |||| || ||||| | | || ||| | | || Sbjct 1221 GCACCAGCCCCGACTGCGC--GATCCGCGTGTCGATGCTGTCGGGCAGGTTGC-GATGCT 1277 Query 138076 CGACGGACCCGGCC--CGCCGTGCGGGACGGCGTGCTCGATCAGCGAGCGAAGCTTGGAC 138133 || | | | ||||| |||| ||| ||| ||||||| ||||| || | | | Sbjct 1278 CG-CCGCCACGGCCGTTGCCGACCGGCACGCTACGCTCGATGCTGGAGCGCAGTTGCGCC 1336 Query 138134 AGGCTGTCGGGGAGGTCCGACGCGGTCAGGCTGGTGCGGACCGCCATCATGCCGCAGCCG 138193 ||| |||| || ||||| || |||| ||||||| ||||| ||||||||||||| Sbjct 1337 AGGTTGTCCGGCAGGTCGCTGGCACGCAGGGTGGTGCGCACCGCGGCCATGCCGCAGCCG 1396 Query 138194 ATGTCGACGCCGACGGCGGCCGGGATGATCGCGCC 138228 || || ||||| || |||||||||||||| || || Sbjct 1397 ATATCCACGCCAACCGCGGCCGGGATGATGGCACC 1431 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 709614378809280