Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414525.1_2020
15-10-27] 12,086 sequences; 74,456,230 total letters
Query= NC_019411.1
Length=219216
Score E
Sequences producing significant alignments: (Bits) Value
seq5730 185 1e-41
>seq5730
Length=1907
Score = 185 bits (204), Expect = 1e-41
Identities = 534/801 (67%), Gaps = 38/801 (5%)
Strand=Plus/Plus
Query 136205 TCCGCGTTGCCCTTGCCGCGCACGATGTAGGACTTGGCC--CCCATCGAGCCGGGGATGA 136262
|| |||||||| || |||||||||||| || || ||||| |||||| ||||
Sbjct 656 TCTGCGTTGCCTAACCCACGCACGATGTAG--CTGCGCGTGCCCATGCTGCCGGGAATGA 713
Query 136263 TCCCGAACTGGTCCTTCTGCGCCGACACCGCGCCCTTGCGGGTCACGAAGACCCACTCGT 136322
| || | || | | | | || |||||||||||| ||||| | | | ||||
Sbjct 714 TGCCCAGCTCGCCGGTACGTGCGCTCACCGCGCCCTTACGGGTGATCAGCAATTCCTCGC 773
Query 136323 CGAAGTGGAATTCCTTCTGGACGTAGTTGTGGTGGCAGTTCACCGCTTCCTTGTCCGTCT 136382
| ||| ||| |||| || ||||||||||||||||| ||||| ||| ||| ||
Sbjct 774 CATGGTGCGTCTCCCTCTGCACATAGTTGTGGTGGCAGTTGACCGCCAGCTTCTCCAGCT 833
Query 136383 TGAACGGCGGCAGGCCCGACGCT--CGCATGGCCTCCAGGACCCGGACCATCATCATCTC 136440
|||| ||||| |||| | ||||| || ||| ||||| |||||||| ||
Sbjct 834 GGAACTTCGGCA-----GACGGTGACGCATCTCCGCCAACACCCGCGCCATCATCGCTTC 888
Query 136441 GCGGTTGATCCGCGCGAAGTCCTGGCCCCAGGCGACGGCTTCCACGTAGTCGTGGAACTC 136500
|| || || ||| | ||||| |||| | || |||||||| || || | ||||
Sbjct 889 ACGATTTTCGCGTGCGTAATCCTGCGCCCACGACACCGCTTCCACATACTCATCGAACAG 948
Query 136501 CGGCTCGCCTTCGCA-GAGCCAAGCAAGGTCCTTGTCCAGCGGCT-TACGCCCGTCA--C 136556
||||||||| | ||| || | || ||||||||||| || | | | |||| || |
Sbjct 949 CGGCTCGCCCT-GCATGAAGAAGGCCAGGTCCTTGTCGGGCAGATGAAAGCCCAGCACGC 1007
Query 136557 GGCGCAGCATCATCTCCTTGGCCTTCTCGATGAAGATGCGGCCGATGGTGTTGCCGACGC 136616
|| | || ||| ||| |||||||||| | |||||| ||||||| ||
Sbjct 1008 GGTGTGCCAGTTGCTCACGCGCCCGCTCGATGAAGTAGGTGCCGATCAGGTTGCCGGTGC 1067
Query 136617 CGCGCGAGCCCGAGTGGAGCATCACCCAGA-CGCGCTGGTCCTCGTCGAGGCAGACCTCG 136675
| |||||||| ||| | ||||||||| | |||| ||| |||||| || |||| |||
Sbjct 1068 CACGCGAGCCGCTGTGCAACATCACCCACACCGCGTCGGT-CTCGTCCAGACAGAGTTCG 1126
Query 136676 ATGAAGTGGTTGCCGCCGCCCAGGGTGCCCAGTTGGACCACGCTGTTGGCGTTCTTCAGC 136735
||||||||||||||||||||||| ||||| | ||| ||||| | | || |
Sbjct 1127 ATGAAGTGGTTGCCGCCGCCCAGCGTGCCGATCTGG--CACGC-----CAGCTTATCGGT 1179
Query 136736 GCCGGGTACTTCTCGCAGAGCTTGTCGAACCGCGCCTCCAGGCCC--GAGTCGACCCACT 136793
| ||| | | || | ||| | || ||| ||||||| | | | |||
Sbjct 1180 G-CGGATGC-GCTTGTGCTGCTGCTTGA---TCGCTTCCAGGCGCTGCACCAGCCCCGAC 1234
Query 136794 TGCGCAGGATCGAGTTGGGGATGCCGCTGCGCCCGTTCCAGCCGCCCGACGGACCCGGCC 136853
||||| |||| || ||||| | | || ||| | | || || | | | |||||
Sbjct 1235 TGCGC--GATCCGCGTGTCGATGCTGTCGGGCAGGTTGC-GATGCTCG-CCGCCACGGCC 1290
Query 136854 --CGCCGTGCGGGACGGCGTGCTCGATCAGCGAGCGAAGCTTGGCGAGGCTGTCGGGAAG 136911
|||| ||| ||| ||||||| ||||| || | || ||| |||| || ||
Sbjct 1291 GTTGCCGACCGGCACGCTACGCTCGATGCTGGAGCGCAGTTGCGCCAGGTTGTCCGGCAG 1350
Query 136912 GTCCGACGCGGTCAGGCTGGTGCGGACCGCCATCATGCCGCAGCCGATGTCGACGCCGAC 136971
||| || |||| ||||||| ||||| ||||||||||||||| || ||||| ||
Sbjct 1351 GTCGCTGGCACGCAGGGTGGTGCGCACCGCGGCCATGCCGCAGCCGATATCCACGCCAAC 1410
Query 136972 GGCGGCCGGGATGATCGCGCC 136992
|||||||||||||| || ||
Sbjct 1411 CGCGGCCGGGATGATGGCACC 1431
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 701257241554560
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |