Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414525.1_2020 15-10-27] 12,086 sequences; 74,456,230 total letters Query= NC_019411.1 Length=219216 Score E Sequences producing significant alignments: (Bits) Value seq5730 185 1e-41 >seq5730 Length=1907 Score = 185 bits (204), Expect = 1e-41 Identities = 534/801 (67%), Gaps = 38/801 (5%) Strand=Plus/Plus Query 136205 TCCGCGTTGCCCTTGCCGCGCACGATGTAGGACTTGGCC--CCCATCGAGCCGGGGATGA 136262 || |||||||| || |||||||||||| || || ||||| |||||| |||| Sbjct 656 TCTGCGTTGCCTAACCCACGCACGATGTAG--CTGCGCGTGCCCATGCTGCCGGGAATGA 713 Query 136263 TCCCGAACTGGTCCTTCTGCGCCGACACCGCGCCCTTGCGGGTCACGAAGACCCACTCGT 136322 | || | || | | | | || |||||||||||| ||||| | | | |||| Sbjct 714 TGCCCAGCTCGCCGGTACGTGCGCTCACCGCGCCCTTACGGGTGATCAGCAATTCCTCGC 773 Query 136323 CGAAGTGGAATTCCTTCTGGACGTAGTTGTGGTGGCAGTTCACCGCTTCCTTGTCCGTCT 136382 | ||| ||| |||| || ||||||||||||||||| ||||| ||| ||| || Sbjct 774 CATGGTGCGTCTCCCTCTGCACATAGTTGTGGTGGCAGTTGACCGCCAGCTTCTCCAGCT 833 Query 136383 TGAACGGCGGCAGGCCCGACGCT--CGCATGGCCTCCAGGACCCGGACCATCATCATCTC 136440 |||| ||||| |||| | ||||| || ||| ||||| |||||||| || Sbjct 834 GGAACTTCGGCA-----GACGGTGACGCATCTCCGCCAACACCCGCGCCATCATCGCTTC 888 Query 136441 GCGGTTGATCCGCGCGAAGTCCTGGCCCCAGGCGACGGCTTCCACGTAGTCGTGGAACTC 136500 || || || ||| | ||||| |||| | || |||||||| || || | |||| Sbjct 889 ACGATTTTCGCGTGCGTAATCCTGCGCCCACGACACCGCTTCCACATACTCATCGAACAG 948 Query 136501 CGGCTCGCCTTCGCA-GAGCCAAGCAAGGTCCTTGTCCAGCGGCT-TACGCCCGTCA--C 136556 ||||||||| | ||| || | || ||||||||||| || | | | |||| || | Sbjct 949 CGGCTCGCCCT-GCATGAAGAAGGCCAGGTCCTTGTCGGGCAGATGAAAGCCCAGCACGC 1007 Query 136557 GGCGCAGCATCATCTCCTTGGCCTTCTCGATGAAGATGCGGCCGATGGTGTTGCCGACGC 136616 || | || ||| ||| |||||||||| | |||||| ||||||| || Sbjct 1008 GGTGTGCCAGTTGCTCACGCGCCCGCTCGATGAAGTAGGTGCCGATCAGGTTGCCGGTGC 1067 Query 136617 CGCGCGAGCCCGAGTGGAGCATCACCCAGA-CGCGCTGGTCCTCGTCGAGGCAGACCTCG 136675 | |||||||| ||| | ||||||||| | |||| ||| |||||| || |||| ||| Sbjct 1068 CACGCGAGCCGCTGTGCAACATCACCCACACCGCGTCGGT-CTCGTCCAGACAGAGTTCG 1126 Query 136676 ATGAAGTGGTTGCCGCCGCCCAGGGTGCCCAGTTGGACCACGCTGTTGGCGTTCTTCAGC 136735 ||||||||||||||||||||||| ||||| | ||| ||||| | | || | Sbjct 1127 ATGAAGTGGTTGCCGCCGCCCAGCGTGCCGATCTGG--CACGC-----CAGCTTATCGGT 1179 Query 136736 GCCGGGTACTTCTCGCAGAGCTTGTCGAACCGCGCCTCCAGGCCC--GAGTCGACCCACT 136793 | ||| | | || | ||| | || ||| ||||||| | | | ||| Sbjct 1180 G-CGGATGC-GCTTGTGCTGCTGCTTGA---TCGCTTCCAGGCGCTGCACCAGCCCCGAC 1234 Query 136794 TGCGCAGGATCGAGTTGGGGATGCCGCTGCGCCCGTTCCAGCCGCCCGACGGACCCGGCC 136853 ||||| |||| || ||||| | | || ||| | | || || | | | ||||| Sbjct 1235 TGCGC--GATCCGCGTGTCGATGCTGTCGGGCAGGTTGC-GATGCTCG-CCGCCACGGCC 1290 Query 136854 --CGCCGTGCGGGACGGCGTGCTCGATCAGCGAGCGAAGCTTGGCGAGGCTGTCGGGAAG 136911 |||| ||| ||| ||||||| ||||| || | || ||| |||| || || Sbjct 1291 GTTGCCGACCGGCACGCTACGCTCGATGCTGGAGCGCAGTTGCGCCAGGTTGTCCGGCAG 1350 Query 136912 GTCCGACGCGGTCAGGCTGGTGCGGACCGCCATCATGCCGCAGCCGATGTCGACGCCGAC 136971 ||| || |||| ||||||| ||||| ||||||||||||||| || ||||| || Sbjct 1351 GTCGCTGGCACGCAGGGTGGTGCGCACCGCGGCCATGCCGCAGCCGATATCCACGCCAAC 1410 Query 136972 GGCGGCCGGGATGATCGCGCC 136992 |||||||||||||| || || Sbjct 1411 CGCGGCCGGGATGATGGCACC 1431 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 701257241554560