Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414525.1_2020 15-10-27] 12,086 sequences; 74,456,230 total letters Query= NC_019488.1 Length=34117 Score E Sequences producing significant alignments: (Bits) Value seq6992 134 3e-27 seq6336 123 5e-24 >seq6992 Length=1569 Score = 134 bits (148), Expect = 3e-27 Identities = 219/310 (71%), Gaps = 9/310 (3%) Strand=Plus/Minus Query 27693 CGACGGCTTACGCCTCCGCCCGTGCGCTCGGCCTGCGTGCCAAAATCGAC---GAGCAGA 27749 || |||| || ||| | || ||||||||||||||||||||||| |||||| || ||| Sbjct 1544 CGGCGGCATATGCCACTGCGCGTGCGCTCGGCCTGCGTGCCAAGATCGACACCGAACAG- 1486 Query 27750 TCGGCTGGCATAAAACCCTGTCCAATGTGGGTGTGAACGGTGTCACCGGCATTTCCGCTG 27809 |||||||| || | ||||||||| ||| ||| || ||||||||||| ||| | Sbjct 1485 --GGCTGGCACAAGAGCCTGTCCAACGTGCCCGTGGCTGGCGTCACCGGCATCTCCAAGG 1428 Query 27810 ATGTGTTCTGGGATCTGCAGGACCCGGCAACCGATGCGGGACTGCTGAACAAAAATGACG 27869 ||||| |||||||||||||| ||||| |||||||| || | || ||| | ||| Sbjct 1427 ATGTGCATTGGGATCTGCAGGATCCGGCCACCGATGCCGGCATCCTCAACGAGGGCGACA 1368 Query 27870 TCACCACATTGAT-CCGCAAAGACGGCTTCCGCTTCTGGGGTTCCCGTTGTCTCAGTGAC 27928 ||||||| || | || | ||||| ||||||||||| || || | || Sbjct 1367 TCACCACGCTGGTGACGTTCA-ACGGCCAGCGCTTCTGGGGATCGCGCACGTGCGCGGAG 1309 Query 27929 GATCCGCTGTTTGCTTTTGAGAACTACACCCGTACGGCGCAGGTGCTGGCTGACACTAT- 27987 || |||| || || |||| ||| || || |||||| | ||||| ||||| || Sbjct 1308 GACAACATGTTCGCCTTCGAGACGGCCACGCGCACCGCGCAGATCCTGGCCGACACCATC 1249 Query 27988 GGCGGAGGCG 27997 | || ||||| Sbjct 1248 GCCGAAGGCG 1239 >seq6336 Length=1727 Score = 123 bits (136), Expect = 5e-24 Identities = 255/372 (69%), Gaps = 17/372 (5%) Strand=Plus/Minus Query 13948 GCCTGTGCCTTACTGGCAGAAAGGAAAATCTGGTTGCGTCCGGTCAGCAGGGCGTCAATC 14007 ||||| ||||| ||| | ||||||||| ||||| ||||| || || || ||| Sbjct 1360 GCCTGCGCCTTGGAGGCGCTCAAGAAAATCTGATTGCGCCCGGTGGTGAGCGCATCGATC 1301 Query 14008 AATGCTTCACGGGCAAAATAAAACGTGGCGCCAATCTGGCGCGACTTGAGCAGGTTGCGG 14067 | ||||| || || || |||||||| || || ||||||||||||||||| | | ||||| Sbjct 1300 AGCGCTTCGCGAGCGAAGTAAAACGTTGCACCGATCTGGCGCGACTTGAGGATGATGCGG 1241 Query 14068 ATGCGGTTTGTTTTCCCGGCTTCAAACCAGTGACGCTGATAGTCGAACATAGAGGCGTGG 14127 |||| | || ||||| |||| | ||||| |||||||| || ||| | Sbjct 1240 GTGCGCT---CGTTGCCGGCCCGGTACCAATCGCGCTGGTAGTCGAA---GCAGCCGTCG 1187 Query 14128 AAGA---CTTCTTCCAGCTTTTCGATCTGTTCATCAGTGAAAACATT-CTTTTCCGGCTG 14183 | || | ||||| |||| |||||| |||||||| | || | || || | Sbjct 1186 ACGAACGCGGTGGTCAGCTGCTCGACCTGTTCTTCAGTGAAGTCGTTGCGCTT--GGGTT 1129 Query 14184 ACGGCGTGGGC-CTTTGTTGCGGTTGGCGACGTTAGGGTTTAAGTCGGCTTCGTTGCCAC 14242 | | ||| | |||||| |||||||| || || | |||||||||||||| | Sbjct 1128 TTTTCTTTGGCGCAGCGTTGCGATTGGCGACAGCCGGATTCAGATCGGCTTCGTTGCCGC 1069 Query 14243 --CATTGTTAAACTTGCCGATCCGCGCGTGGCGCTCCGACTGGCGCGCCAGCAGGTCAAT 14300 | ||| || || ||| ||||| ||||||||| |||| || |||||| ||||| Sbjct 1068 CGCCTTGGTAGCGCTG--GATGCGCGCCTGGCGCTCCAACTGCCGATGCAGCAGATCAAT 1011 Query 14301 TTCTTTGAAATC 14312 ||| |||||||| Sbjct 1010 TTCCTTGAAATC 999 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 109037148605828