Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414525.1_2020
15-10-27] 12,086 sequences; 74,456,230 total letters
Query= NC_019488.1
Length=34117
Score E
Sequences producing significant alignments: (Bits) Value
seq6992 134 3e-27
seq6336 123 5e-24
>seq6992
Length=1569
Score = 134 bits (148), Expect = 3e-27
Identities = 219/310 (71%), Gaps = 9/310 (3%)
Strand=Plus/Minus
Query 27693 CGACGGCTTACGCCTCCGCCCGTGCGCTCGGCCTGCGTGCCAAAATCGAC---GAGCAGA 27749
|| |||| || ||| | || ||||||||||||||||||||||| |||||| || |||
Sbjct 1544 CGGCGGCATATGCCACTGCGCGTGCGCTCGGCCTGCGTGCCAAGATCGACACCGAACAG- 1486
Query 27750 TCGGCTGGCATAAAACCCTGTCCAATGTGGGTGTGAACGGTGTCACCGGCATTTCCGCTG 27809
|||||||| || | ||||||||| ||| ||| || ||||||||||| ||| |
Sbjct 1485 --GGCTGGCACAAGAGCCTGTCCAACGTGCCCGTGGCTGGCGTCACCGGCATCTCCAAGG 1428
Query 27810 ATGTGTTCTGGGATCTGCAGGACCCGGCAACCGATGCGGGACTGCTGAACAAAAATGACG 27869
||||| |||||||||||||| ||||| |||||||| || | || ||| | |||
Sbjct 1427 ATGTGCATTGGGATCTGCAGGATCCGGCCACCGATGCCGGCATCCTCAACGAGGGCGACA 1368
Query 27870 TCACCACATTGAT-CCGCAAAGACGGCTTCCGCTTCTGGGGTTCCCGTTGTCTCAGTGAC 27928
||||||| || | || | ||||| ||||||||||| || || | ||
Sbjct 1367 TCACCACGCTGGTGACGTTCA-ACGGCCAGCGCTTCTGGGGATCGCGCACGTGCGCGGAG 1309
Query 27929 GATCCGCTGTTTGCTTTTGAGAACTACACCCGTACGGCGCAGGTGCTGGCTGACACTAT- 27987
|| |||| || || |||| ||| || || |||||| | ||||| ||||| ||
Sbjct 1308 GACAACATGTTCGCCTTCGAGACGGCCACGCGCACCGCGCAGATCCTGGCCGACACCATC 1249
Query 27988 GGCGGAGGCG 27997
| || |||||
Sbjct 1248 GCCGAAGGCG 1239
>seq6336
Length=1727
Score = 123 bits (136), Expect = 5e-24
Identities = 255/372 (69%), Gaps = 17/372 (5%)
Strand=Plus/Minus
Query 13948 GCCTGTGCCTTACTGGCAGAAAGGAAAATCTGGTTGCGTCCGGTCAGCAGGGCGTCAATC 14007
||||| ||||| ||| | ||||||||| ||||| ||||| || || || |||
Sbjct 1360 GCCTGCGCCTTGGAGGCGCTCAAGAAAATCTGATTGCGCCCGGTGGTGAGCGCATCGATC 1301
Query 14008 AATGCTTCACGGGCAAAATAAAACGTGGCGCCAATCTGGCGCGACTTGAGCAGGTTGCGG 14067
| ||||| || || || |||||||| || || ||||||||||||||||| | | |||||
Sbjct 1300 AGCGCTTCGCGAGCGAAGTAAAACGTTGCACCGATCTGGCGCGACTTGAGGATGATGCGG 1241
Query 14068 ATGCGGTTTGTTTTCCCGGCTTCAAACCAGTGACGCTGATAGTCGAACATAGAGGCGTGG 14127
|||| | || ||||| |||| | ||||| |||||||| || ||| |
Sbjct 1240 GTGCGCT---CGTTGCCGGCCCGGTACCAATCGCGCTGGTAGTCGAA---GCAGCCGTCG 1187
Query 14128 AAGA---CTTCTTCCAGCTTTTCGATCTGTTCATCAGTGAAAACATT-CTTTTCCGGCTG 14183
| || | ||||| |||| |||||| |||||||| | || | || || |
Sbjct 1186 ACGAACGCGGTGGTCAGCTGCTCGACCTGTTCTTCAGTGAAGTCGTTGCGCTT--GGGTT 1129
Query 14184 ACGGCGTGGGC-CTTTGTTGCGGTTGGCGACGTTAGGGTTTAAGTCGGCTTCGTTGCCAC 14242
| | ||| | |||||| |||||||| || || | |||||||||||||| |
Sbjct 1128 TTTTCTTTGGCGCAGCGTTGCGATTGGCGACAGCCGGATTCAGATCGGCTTCGTTGCCGC 1069
Query 14243 --CATTGTTAAACTTGCCGATCCGCGCGTGGCGCTCCGACTGGCGCGCCAGCAGGTCAAT 14300
| ||| || || ||| ||||| ||||||||| |||| || |||||| |||||
Sbjct 1068 CGCCTTGGTAGCGCTG--GATGCGCGCCTGGCGCTCCAACTGCCGATGCAGCAGATCAAT 1011
Query 14301 TTCTTTGAAATC 14312
||| ||||||||
Sbjct 1010 TTCCTTGAAATC 999
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 109037148605828
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |