Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414525.1_2020 15-10-27] 12,086 sequences; 74,456,230 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq732 127 4e-24 >seq732 Length=22061 Score = 127 bits (140), Expect = 4e-24 Identities = 310/463 (67%), Gaps = 10/463 (2%) Strand=Plus/Minus Query 25576 GAGCAGCATTTTCTCAAGTACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAAC 25635 |||| || ||| ||||| | ||| | || |||||||||||| |||||| || |||||| Sbjct 9417 GAGCGTCACTTTATCAAGCATGTGCTCGCCTTCTTTGCAGCCAGTGATGGCATTGTGAAC 9358 Query 25636 GAGAATCTGTGCGAGAGATTCACCAGGGAAGTGC-AGTACGTGGAGGCCAAGTGTTTCTA 25694 ||||||||| | || || | || ||||||| ||| | ||| || ||| || || Sbjct 9357 GAGAATCTGGCCATGAACTTTAGCAATGAAGTGCAAGTGC-CGGAAGCTCGGTGCTTTTA 9299 Query 25695 CGGTTTCCAGATGGCCATCGAAAATGTGCACTCTGAGGTGTATGCCAAGCTTCTGAT--- 25751 || |||||||| || || ||||| | ||||| || || ||| | ||| || || Sbjct 9298 TGGCTTCCAGATCGCGATTGAAAACATCCACTCGGAAGTCTATTC---GCTGCTCATTGA 9242 Query 25752 GACGTACATTACAGACGTCGCCGAGAGAGATCGGCTGTTTGGTGCCATCGAGCACATACC 25811 |||||||||| ||| | | |||| |||| || | | || || ||| ||| || Sbjct 9241 CACGTACATTAAAGAGGCGACGGAGAAGGATCACCTTCTGCGCGCGATTGAGACCATCCC 9182 Query 25812 CAGCATCAAGAGGAAGGCGCGGTGGGCCATGAAGTGGATCAACAGCCAGAGCGCTACGTT 25871 | | | ||| || ||||| | |||||| | || || || ||| Sbjct 9181 GTGTGTTCGAAAGAAAGCCAATTGGGCGCTCAAGTGGTGCGACCCACAAGTATCTTCGTA 9122 Query 25872 TGGCGAGCGGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTT-TG 25930 | ||||||||| | || ||||| | || || ||||| || ||| || ||||| || Sbjct 9121 CGCGGAGCGGCTGCTGGCATTTGCCTCGGTCGAAGGCATTTTCTTCTCGGGCTCGTTCTG 9062 Query 25931 CGGCCATCTTCTGGCTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGC 25990 | | ||||| ||||| ||| || || |||||| || || ||| || ||||||| Sbjct 9061 C-TCGATCTTTTGGCTGAAGAAGCGCGGTCTCATGCCTGGCCTCAGCTTCTCGAACGAGC 9003 Query 25991 TCATCAGCAGGGACGAGGGTCTCCACAGAGATTTTGCCTGCCT 26033 |||| || | || ||||| | |||| || ||||| ||||| Sbjct 9002 TCATTAGTCGAGATGAGGGCATGCACACGGACTTTGCGTGCCT 8960 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928704474771840