Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414525.1_2020 15-10-27] 12,086 sequences; 74,456,230 total letters Query= NC_019544.1 Length=49335 Score E Sequences producing significant alignments: (Bits) Value seq8929 136 1e-27 seq3145 127 6e-25 >seq8929 Length=1248 Score = 136 bits (150), Expect = 1e-27 Identities = 274/404 (68%), Gaps = 2/404 (0%) Strand=Plus/Plus Query 45438 TGAAACAATATCTAGACTTGCTGCAAGACATCTTAGAAAACGGCGTGGAGAAAGAAGATC 45497 |||| | ||||| || ||||||| || | | ||| |||| | || || || | Sbjct 811 TGAAGCCGTATCTGGATCTGCTGCAGCACGTGCTGGAACACGGTGCCGAAAAGTCCGACC 870 Query 45498 GGACGGGAACAGGCACATTGTCGGTGTTCGGCCGTCAGCTGCGCTTTAACTTGCAGGACG 45557 | || || || ||||| ||||||||| | ||| ||||||| | | | || Sbjct 871 GCACCGGTACCGGCACGCGCAGCGTGTTCGGCTGGCAGATGCGCTTCGATCTCACTGCCG 930 Query 45558 GATTCCCGCTCGTGACGACGAAAAAGTTGCATATCCGCTCGATCATTTATGAACTGCTCT 45617 | || ||||| || || || || ||| ||||| | ||||||||||| | || ||||| | Sbjct 931 GCTTTCCGCTGGTCACCACCAAGAAGCTGCATCTGCGCTCGATCATCCACGAGCTGCTGT 990 Query 45618 GGTTTTTAAAAGGCGATACGAATGTTCGCTATTTGCAGGAGAATGGTGTGACGATTTGGG 45677 ||||| | | |||||||| || | | ||| || | || || ||| || |||| Sbjct 991 GGTTTCTGCAGGGCGATACCAACATCGGGTATCTGAAAGACAACCAGGTGCGTATCTGGG 1050 Query 45678 ACGAGTGGGCCGATGAAAACGGCGATCTCGGCCCAATCTACGGCGCGCAATGGCGGTCGT 45737 |||| |||||||| || || ||||| || ||||| | |||||| ||| |||||| | Sbjct 1051 ACGAATGGGCCGACGACAATGGCGACCTTGGCCCGGTGTACGGCAAGCAGTGGCGGCGTT 1110 Query 45738 GGAAAGGGGCTGACGGGAAAACGGTCGACCAAATTGCGGCGG-TCTTTAAGGAAATCAAG 45796 ||| || | ||||| | ||||||| | ||| | || | | | || ||||| Sbjct 1111 GGACCGGCCCGGACGGCGTCGAGATCGACCAGA-TGCAGTGGCTGGTCGATGAGATCAAA 1169 Query 45797 CGCAACCCGAACTCGCGGCGGTTGCTTGTGAGCGCGTGGAACGT 45840 ||||||||| | ||||| ||| || | | ||||| |||||||| Sbjct 1170 CGCAACCCGGATTCGCGCCGGCTGGTGATCAGCGCCTGGAACGT 1213 >seq3145 Length=4143 Score = 127 bits (140), Expect = 6e-25 Identities = 351/534 (66%), Gaps = 8/534 (1%) Strand=Plus/Plus Query 45486 AGAAAGAAGATCGGACGGGAACAGGCACATTGTCGGTGTTCGGCCGTCAGCTGCGCTTTA 45545 ||||| || || || || || || || | |||||||| ||| ||| |||| |||| Sbjct 514 AGAAAACCGACCGTACCGGCACCGGGACGATTTCGGTGTTTGGCTACCAGATGCGATTTA 573 Query 45546 ACTTGCAGGACGGATTCCCGCTCGTGACGACGAAAAAGTTGCATATCCGCTCGATCATTT 45605 || || || ||||||||||| ||||||| ||||| | ||| | || || || Sbjct 574 ACCTGGCAGAAGGATTCCCGCTACTGACGACTAAAAAAGTCCATTTGAAATCCATTATCC 633 Query 45606 ATGAACTGCTCTGGTTTTTAAAAGGCGATACGAATGTTCGCTATTTGCAGGAGAATGGTG 45665 | || || | ||||||||||||||| || ||| || |||||| | || || || | Sbjct 634 ACGAGTTGTTATGGTTTTTAAAAGGCAGCACCAATATTGCCTATTTAAAAGAAAACGGCG 693 Query 45666 TGACGATTTGGGACGAGTGGGCCGATGAAAACGGCGATCTCGGCCCAATCTACGGCGCGC 45725 ||| || ||||| |||||||| |||| | || | || ||||| | || ||| | Sbjct 694 TGAAAATCTGGGATGAGTGGGCAGATGCCGAAGGTAACCTGGGCCCGGTATATGGCTACC 753 Query 45726 AATGGCGGTCGTGGAAAGGGGCTGACGGGAAAACGGTCGACCAAATTGCGGCGGTCTTTA 45785 | ||||| ||| | | |||||| | | ||||| ||| | |||| | | Sbjct 754 AGTGGCGTAACTGGCCCAAGCCGGACGGGTCACATATAGACCAGATTACCCAGGTCATCA 813 Query 45786 AGGAAATCAAGCGCAACCCGAACTCGCGGCGGTTGCTTGTGAGCGCGTGGAACGTGGCAA 45845 | | ||||| | || | || || || ||| | || || ||||| || | Sbjct 814 ACCAGATCAAAAAGACGCCAGATTCACGTCGTTTGATCGTATCGGCCTGGAATGTCTCGG 873 Query 45846 AGTTGGGGGAAATGAAGTTGCCCCCATGTCATTACGCCTTT---CAGTTTTACGTCGCGA 45902 | | | | | ||||||||||| || || ||| || ||| |||||||| ||||| Sbjct 874 ATATCGAGCACATGAAGTTGCCGCCTTGCCAT---GCTTTTTTCCAGTTTTATGTCGCAG 930 Query 45903 ATGGCCGGTTGTCATGCATGTGGCAACAGCGTTCTGTCGATACATTTCTAGGATTGCCGT 45962 |||| | ||| ||| || | | |||||| || |||| || || || |||||| Sbjct 931 ATGGGAGATTGAGTTGCCAGTTGTACCAGCGTAGTGCGGATATTTTCCTCGGCGTGCCGT 990 Query 45963 TTAACATCGCTAGCTATGCGCTGTTGACACAT-ATGGTTGCCCAACAATGCGAC 46015 | || || || |||||||||| |||| ||| ||||| || ||| |||||| Sbjct 991 TCAATATTGCCTCCTATGCGCTGCTGAC-CATGATGGTGGCGCAAGCCTGCGAC 1043 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 157727759465404