Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414525.1_2020 15-10-27] 12,086 sequences; 74,456,230 total letters Query= NC_019909.1 Length=168809 Score E Sequences producing significant alignments: (Bits) Value seq4167 105 7e-18 seq6661 86.0 7e-12 >seq4167 Length=2817 Score = 105 bits (116), Expect = 7e-18 Identities = 106/136 (78%), Gaps = 4/136 (3%) Strand=Plus/Plus Query 146866 GCGTTAATACTGTCAAGACTATCGCCACCTTCAATAACAACGCAAGAACTGAACTGGCGA 146925 ||||| || || || || |||||||||| ||||| | ||||| || ||||||||||| Sbjct 4 GCGTTGATGCTATCCAGGCTATCGCCACACTCAATCAATACGCAGGAGCTGAACTGGCGT 63 Query 146926 GTCGGAGTACGTACACCGGCCATAATTGGAGTAGGCAGAGAAATCT--GACGTTTAGATA 146983 || || ||||| ||||||| ||| || || |||||||| ||||||| ||| | || | Sbjct 64 GTAGGTGTACGCACACCGGACATGATAGGGGTAGGCAGGGAAATCTTGAACG--TGGAAA 121 Query 146984 CGGCATTATAGAAACG 146999 |||||| |||||||| Sbjct 122 CGGCATCGTAGAAACG 137 >seq6661 Length=1649 Score = 86.0 bits (94), Expect = 7e-12 Identities = 63/72 (88%), Gaps = 1/72 (1%) Strand=Plus/Plus Query 74900 TTTGGTGGCCCTTACTGGATTTGAACCAGTGACCAATCGATTATGAGTCGACTGCTCTAA 74959 |||||||| || ||||| ||||||||| ||||||||| ||||||| |||||||||||| Sbjct 237 TTTGGTGGGCCCAGCTGGACTTGAACCAGCGACCAATCGGTTATGAGCCGACTGCTCTAA 296 Query 74960 CCATCTGAGCTA 74971 ||| |||||||| Sbjct 297 CCA-CTGAGCTA 307 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 539979210314640