Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414525.1_2020 15-10-27] 12,086 sequences; 74,456,230 total letters Query= NC_019929.1 Length=243050 Score E Sequences producing significant alignments: (Bits) Value seq8929 185 1e-41 seq3145 136 6e-27 >seq8929 Length=1248 Score = 185 bits (204), Expect = 1e-41 Identities = 218/295 (74%), Gaps = 0/295 (0%) Strand=Plus/Plus Query 122364 TGAAACAATATCTGGACTTACTGCGTGACGTTCGTGACAACGGGCACGAAAAAGCAGACC 122423 |||| | |||||||| | |||| |||| | || |||| |||||| | |||| Sbjct 811 TGAAGCCGTATCTGGATCTGCTGCAGCACGTGCTGGAACACGGTGCCGAAAAGTCCGACC 870 Query 122424 GTACGGGCACGGGCACCCTGTCGTTATTCGGCGCACAAATGCGCTTTGACCTGCAAAAAG 122483 | || || || ||||| | | |||||| || |||||||| || || | Sbjct 871 GCACCGGTACCGGCACGCGCAGCGTGTTCGGCTGGCAGATGCGCTTCGATCTCACTGCCG 930 Query 122484 GTTTCCCGCTGGTCACGACCAAAAAGGTTCACCTCCGCTCCATCATCCATGAGCTTCTGT 122543 | || ||||||||||| ||||| ||| | || || ||||| |||||||| ||||| |||| Sbjct 931 GCTTTCCGCTGGTCACCACCAAGAAGCTGCATCTGCGCTCGATCATCCACGAGCTGCTGT 990 Query 122544 GGTTCCTCATGGGCGATACCAACATCCAGTATCTGAAAGACAACAACGTCAGTATCTGGG 122603 |||| || |||||||||||||||| |||||||||||||||| | || ||||||||| Sbjct 991 GGTTTCTGCAGGGCGATACCAACATCGGGTATCTGAAAGACAACCAGGTGCGTATCTGGG 1050 Query 122604 ATGAATGGGCAGATGAAGATGGTAATCTCGGCCCGGTGTACGGTAAGCAATGGCG 122658 | |||||||| || || |||| | || |||||||||||||| ||||| ||||| Sbjct 1051 ACGAATGGGCCGACGACAATGGCGACCTTGGCCCGGTGTACGGCAAGCAGTGGCG 1105 >seq3145 Length=4143 Score = 136 bits (150), Expect = 6e-27 Identities = 189/265 (71%), Gaps = 0/265 (0%) Strand=Plus/Plus Query 122403 ACGGGCACGAAAAAGCAGACCGTACGGGCACGGGCACCCTGTCGTTATTCGGCGCACAAA 122462 |||||||| | ||| | |||||||| ||||| || || | ||| | || ||| || | Sbjct 505 ACGGGCACCAGAAAACCGACCGTACCGGCACCGGGACGATTTCGGTGTTTGGCTACCAGA 564 Query 122463 TGCGCTTTGACCTGCAAAAAGGTTTCCCGCTGGTCACGACCAAAAAGGTTCACCTCCGCT 122522 |||| ||| ||||| | |||| |||||||| | ||||| ||||| || || | | Sbjct 565 TGCGATTTAACCTGGCAGAAGGATTCCCGCTACTGACGACTAAAAAAGTCCATTTGAAAT 624 Query 122523 CCATCATCCATGAGCTTCTGTGGTTCCTCATGGGCGATACCAACATCCAGTATCTGAAAG 122582 |||| ||||| ||| | | ||||| | | ||| ||||| || ||| | |||| Sbjct 625 CCATTATCCACGAGTTGTTATGGTTTTTAAAAGGCAGCACCAATATTGCCTATTTAAAAG 684 Query 122583 ACAACAACGTCAGTATCTGGGATGAATGGGCAGATGAAGATGGTAATCTCGGCCCGGTGT 122642 | ||| ||| | ||||||||||| |||||||||| || ||||| || |||||||| | Sbjct 685 AAAACGGCGTGAAAATCTGGGATGAGTGGGCAGATGCCGAAGGTAACCTGGGCCCGGTAT 744 Query 122643 ACGGTAAGCAATGGCGTGAGTGGCC 122667 | || | || |||||| | ||||| Sbjct 745 ATGGCTACCAGTGGCGTAACTGGCC 769 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 777514519245600