Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414525.1_2020
15-10-27] 12,086 sequences; 74,456,230 total letters
Query= NC_019932.1
Length=29564
Score E
Sequences producing significant alignments: (Bits) Value
seq6992 224 2e-54
seq6336 152 1e-32
>seq6992
Length=1569
Score = 224 bits (248), Expect = 2e-54
Identities = 640/965 (66%), Gaps = 64/965 (7%)
Strand=Plus/Plus
Query 25463 ATCAAACGCCTGATGGCGGCCGCGTACCTCGATCTCCACCGCGATTTCCTCGCCGGTGTC 25522
||||| | ||| || |||||||| || | || |||||||| ||||| || ||
Sbjct 598 ATCAATCTCCTTGTGACGGCCGCGCACAACAATTTCCACCGCATCCACCTCGGTGGAATC 657
Query 25523 GTCGCGCTGGTAGGAGCCGGTAAAGCGCAGCGGTACAGC------CGCGCTGCTGCCCCA 25576
|||||||||||||| ||||| |||||||||| | || || || | || ||| |
Sbjct 658 GTCGCGCTGGTAGGCGCCGGCAAAGCGCAGCTGCACGGCGTTGTGCGTGGTGGCGCCGTA 717
Query 25577 CTGTTTCAACAC-CAGATCATCCACGCCGCCGATCGTCCACT-CCATATCAAGCGC-ATC 25633
||| |||| || | | |||| | ||||||| |||| |||| || ||| | |||
Sbjct 718 CTGATTCAGTACGCTGCGCATC-AGGCCGCCG------CACTTCCAT-TCGAGCTCGATC 769
Query 25634 ATCGTCCAGCCCGTTATCCA---CGAACGCGGCACCGTTCATGCCGCCGCCCCGGTAGGC 25690
|| ||| | ||| || | ||| || | || ||||| |||||||| || || |
Sbjct 770 TTC-TCCTGGCCGAAGTCGATGTCGACCGGGCCA---TTCATACCGCCGCCGCGATACTC 825
Query 25691 GTCCAGCTTGCGTGACAGCTTCGGCAGGGTCACGGCGGTCACCACGCCCTGATAGCTGTT 25750
|||| |||||| |||||| | ||||| |||| || |||| ||| ||||||| |
Sbjct 826 CTCCATCTTGCGGGACAGCGTGGGCAGCTTCACTTCGACCACCTGGCCGAGATAGCTCTC 885
Query 25751 TGAATCGTTGAAAAGGTTCAGCCCTTTTAATTTGCGGGGTAATGCCAT----TTATCCGG 25806
|||||||| ||||| ||| |||| | ||| ||| || ||||| || |||||
Sbjct 886 ACCGTCGTTGAACAGGTTGAGCGCTTTGAGTTTCTTGGGCAAAGCCATGGGGTTCTCCGG 945
Query 25807 ----CT----------CCTCAGCTGTTAACGGATGCGGCGAAGTTCGCCAGGTAGCTGTC 25852
|| | | | ||| ||| | ||||||||| ||||||||||||
Sbjct 946 GAATCTGAGGCGGGTGCGTTACGCGTTGACGCGTTCGGCGAAGTCGGCCAGGTAGCTGGT 1005
Query 25853 GGTGATGCGCTGGCGCAGGGTCAAATCTTCCAGCGGCGGCACCGGCGTGTAGTCGTAATC 25912
|||||| || | ||| ||| | |||||||| |||||||||||||||||||||||
Sbjct 1006 GGTGATCTTCTTGTACAGCTGCAAGTTCTCCAGCGGTGGCACCGGCGTGTAGTCGTAATC 1065
Query 25913 AATAAAGAGCTTGCCCGCCTTCAGCGTGTCTT-TATCG---TTGGCCGTGTCGTCATACC 25968
|| | || || |||| || ||| | | | || ||| || || |||| ||||
Sbjct 1066 GAT---GCGCA-GCGCGCCATCGGCGAGCGTGGTGGCGCTGTTGACCATGCCGTCGTACC 1121
Query 25969 AGCACGACGCGCCCAGCAGGTAACCGGCGCTGAC--CAGCTCGCGGAATTTGGCATTGAT 26026
|| || | | || ||| || || ||| ||| |||||||| ||||| |||||
Sbjct 1122 AGGCGTTGGCATCGATCAAGTAGCC--CGACGACTTCAGGTCGCGGAACTTGGCGTTGAT 1179
Query 26027 GCCCGCGATAATGTCGCGCACCAGTACCGGCGTCAGCGGCTTGTCG---TTGGCCCACAT 26083
|||| | || | ||||| || || ||| |||||| | | | ||
Sbjct 1180 CGTTTCGATCAGATCCCTGACCAGCGAGGGGTGCATCGGTTTGTCGACGTAGAACGCCA- 1238
Query 26084 ATGCGCCT-CGGCCATCGTGTCGGCAATCACCTGCGCCGTGCGGGTGTAGTTTTCAAACG 26142
||||| |||| || |||||||| | | |||||| ||||| ||| | || || |
Sbjct 1239 ---CGCCTTCGGCGATGGTGTCGGCCAGGATCTGCGCGGTGCGCGTGGCCGTCTCGAAGG 1295
Query 26143 CAAACAGCGGATCGTCGCTACAGGTGCGGTTGCCCCAGAAGCGGAAGCCATCTTTACGG- 26201
| |||| || || || ||||| ||||||||||| ||| | | |||
Sbjct 1296 CGAACATGTTGTCCTCCGCGCACGTGCGCGATCCCCAGAAGCGCTGGCCGT-TGAACGTC 1354
Query 26202 ATCAGGGTGGTAACGCATGCCTCGTTGAGCAGGTCGGCGTCGGTGCCGGTCTGCTGCAAA 26261
| ||| ||||| | | |||||||||| | | |||| |||||| | | | ||||| |
Sbjct 1355 ACCAGCGTGGTGATGTCGCCCTCGTTGAGGATGCCGGCATCGGTGGCCGGATCCTGCAGA 1414
Query 26262 TCCCAGAAGACCGAGGCGGAAATGCCGGTCACACCGTTAACGCCAACGTTGGACAGGGTT 26321
||||| || ||| |||||||| || || ||| |||||||||||| |
Sbjct 1415 TCCCAATGCACATCCTTGGAGATGCCGGTGACGCCAGCCACGGGCACGTTGGACAGGCTC 1474
Query 26322 TTGTGCCAGCCGGTGTCGGTGTCGATTTTTGCCCGCAGGCCCAGCGCTCGGGCGGTGGCG 26381
||||||||||| ||||||||||| || || |||||||| ||||| || || |||||
Sbjct 1475 TTGTGCCAGCCCTGTTCGGTGTCGATCTTGGCACGCAGGCCGAGCGCACGCGCAGTGGCA 1534
Query 26382 TACGC 26386
|| ||
Sbjct 1535 TATGC 1539
>seq6336
Length=1727
Score = 152 bits (168), Expect = 1e-32
Identities = 242/343 (71%), Gaps = 13/343 (4%)
Strand=Plus/Plus
Query 10733 CGTCAGATTGAACGCCTCGCCCGCGTGGAGCGCTACCGCAGCAGCGGCAACGAGGCCGAT 10792
|| ||| | || |||| || ||| | ||||||||| || |||||||||| ||||||
Sbjct 1026 CGGCAGTTGGAGCGCCAGGCGCGCATCCAGCGCTACCAAGGCGGCGGCAACGAAGCCGAT 1085
Query 10793 CTGAATCCGAACGTACGCAACCGTAACAAAGGCGAGCGCCA--GCCGGTCGTGAAG---A 10847
||||||||| || ||| || ||| || |||||| | ||| |
Sbjct 1086 CTGAATCCGGCTGTCGCCAATCGCAAC----GCT-GCGCCAAAGAAAAAACCCAAGCGCA 1140
Query 10848 ACGTCTTCAGCGACGAGCAGGCGGAAAAGCTGACCGGCCTGTTTATGGATAACTGCTTTG 10907
||| ||||| || || |||| || |||||||| | ||| | || |||||| |
Sbjct 1141 ACGACTTCACTGAAGAACAGGTCGAGCAGCTGACCACCGCGTTCGTCGACGGCTGCTTCG 1200
Query 10908 AATATCAGCTCAACTGGCACAAAGCCGGACTGGATCACCGTATCCGCAACATCCTGAAGT 10967
| || |||| | | ||| || ||||| || | | | ||||| |||||| ||||
Sbjct 1201 ACTACCAGCGCGATTGGTACCGGGCCGGCAACGAGCGC---ACCCGCATCATCCTCAAGT 1257
Query 10968 CGCGCCAGATAGGTGCCACGTTCTACTTTGCCCGCGAGGCGCTGATTGACGCGCTGACCA 11027
|||||||||| ||||| ||||| ||||| || ||||| |||||||| || ||||| ||||
Sbjct 1258 CGCGCCAGATCGGTGCAACGTTTTACTTCGCTCGCGAAGCGCTGATCGATGCGCTCACCA 1317
Query 11028 CCGGGCGCAACCAGATATTTTTGTCGGCCAGCAAGGCGCAGGC 11070
|||||||||| ||||| || ||| ||| ||||||||||||
Sbjct 1318 CCGGGCGCAATCAGATTTTCTTGAGCGCCTCCAAGGCGCAGGC 1360
Score = 109 bits (120), Expect = 1e-19
Identities = 160/225 (71%), Gaps = 11/225 (5%)
Strand=Plus/Plus
Query 11171 CTTGGCACCAACGTGCGCACCGCGCAGAGCTACACCGGCAACCTGTATCTCGATGAATAT 11230
|| || ||||| | |||||||| ||| ||||| |||||| | || |||| ||||
Sbjct 1362 CTCGGGACCAATGCACGCACCGCCCAGGGCTACCACGGCAATTTCTACTTCGACGAATTC 1421
Query 11231 TTCTGGA--TACCGAAATTCCAGGAGCTGCGAAAGGTCGCCAGCGGCATGTCGCTGCATA 11288
||||||| ||| | ||| | || || |||||||||||||||||| || |||| |
Sbjct 1422 TTCTGGACCTACGGG--TTCAACGAATTGAACAAGGTCGCCAGCGGCATGGCGATGCACA 1479
Query 11289 AAAAGTGGCGCACCACCTACTTTTCCACGCCGTCGAGCCTGTCGCACTCCGCTTATCCGT 11348
| |||||||||| |||||||| ||| || |||||| || | ||| || || |||
Sbjct 1480 AGAAGTGGCGCAAGACCTACTTCAGCACACCATCGAGCATGGCCCACGAGGCCTACACGT 1539
Query 11349 TCTGGTCGGGCGAGCTGTTCAACAAAG-------GGCGGCGCAGC 11386
| ||| | ||||||| |||||| | |||||||||||
Sbjct 1540 TTTGGACCGGCGAGCGCCGCAACAAGGGCAAGCCGGCGGCGCAGC 1584
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 94469639653032
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |