Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414525.1_2020 15-10-27] 12,086 sequences; 74,456,230 total letters Query= NC_019932.1 Length=29564 Score E Sequences producing significant alignments: (Bits) Value seq6992 224 2e-54 seq6336 152 1e-32 >seq6992 Length=1569 Score = 224 bits (248), Expect = 2e-54 Identities = 640/965 (66%), Gaps = 64/965 (7%) Strand=Plus/Plus Query 25463 ATCAAACGCCTGATGGCGGCCGCGTACCTCGATCTCCACCGCGATTTCCTCGCCGGTGTC 25522 ||||| | ||| || |||||||| || | || |||||||| ||||| || || Sbjct 598 ATCAATCTCCTTGTGACGGCCGCGCACAACAATTTCCACCGCATCCACCTCGGTGGAATC 657 Query 25523 GTCGCGCTGGTAGGAGCCGGTAAAGCGCAGCGGTACAGC------CGCGCTGCTGCCCCA 25576 |||||||||||||| ||||| |||||||||| | || || || | || ||| | Sbjct 658 GTCGCGCTGGTAGGCGCCGGCAAAGCGCAGCTGCACGGCGTTGTGCGTGGTGGCGCCGTA 717 Query 25577 CTGTTTCAACAC-CAGATCATCCACGCCGCCGATCGTCCACT-CCATATCAAGCGC-ATC 25633 ||| |||| || | | |||| | ||||||| |||| |||| || ||| | ||| Sbjct 718 CTGATTCAGTACGCTGCGCATC-AGGCCGCCG------CACTTCCAT-TCGAGCTCGATC 769 Query 25634 ATCGTCCAGCCCGTTATCCA---CGAACGCGGCACCGTTCATGCCGCCGCCCCGGTAGGC 25690 || ||| | ||| || | ||| || | || ||||| |||||||| || || | Sbjct 770 TTC-TCCTGGCCGAAGTCGATGTCGACCGGGCCA---TTCATACCGCCGCCGCGATACTC 825 Query 25691 GTCCAGCTTGCGTGACAGCTTCGGCAGGGTCACGGCGGTCACCACGCCCTGATAGCTGTT 25750 |||| |||||| |||||| | ||||| |||| || |||| ||| ||||||| | Sbjct 826 CTCCATCTTGCGGGACAGCGTGGGCAGCTTCACTTCGACCACCTGGCCGAGATAGCTCTC 885 Query 25751 TGAATCGTTGAAAAGGTTCAGCCCTTTTAATTTGCGGGGTAATGCCAT----TTATCCGG 25806 |||||||| ||||| ||| |||| | ||| ||| || ||||| || ||||| Sbjct 886 ACCGTCGTTGAACAGGTTGAGCGCTTTGAGTTTCTTGGGCAAAGCCATGGGGTTCTCCGG 945 Query 25807 ----CT----------CCTCAGCTGTTAACGGATGCGGCGAAGTTCGCCAGGTAGCTGTC 25852 || | | | ||| ||| | ||||||||| |||||||||||| Sbjct 946 GAATCTGAGGCGGGTGCGTTACGCGTTGACGCGTTCGGCGAAGTCGGCCAGGTAGCTGGT 1005 Query 25853 GGTGATGCGCTGGCGCAGGGTCAAATCTTCCAGCGGCGGCACCGGCGTGTAGTCGTAATC 25912 |||||| || | ||| ||| | |||||||| ||||||||||||||||||||||| Sbjct 1006 GGTGATCTTCTTGTACAGCTGCAAGTTCTCCAGCGGTGGCACCGGCGTGTAGTCGTAATC 1065 Query 25913 AATAAAGAGCTTGCCCGCCTTCAGCGTGTCTT-TATCG---TTGGCCGTGTCGTCATACC 25968 || | || || |||| || ||| | | | || ||| || || |||| |||| Sbjct 1066 GAT---GCGCA-GCGCGCCATCGGCGAGCGTGGTGGCGCTGTTGACCATGCCGTCGTACC 1121 Query 25969 AGCACGACGCGCCCAGCAGGTAACCGGCGCTGAC--CAGCTCGCGGAATTTGGCATTGAT 26026 || || | | || ||| || || ||| ||| |||||||| ||||| ||||| Sbjct 1122 AGGCGTTGGCATCGATCAAGTAGCC--CGACGACTTCAGGTCGCGGAACTTGGCGTTGAT 1179 Query 26027 GCCCGCGATAATGTCGCGCACCAGTACCGGCGTCAGCGGCTTGTCG---TTGGCCCACAT 26083 |||| | || | ||||| || || ||| |||||| | | | || Sbjct 1180 CGTTTCGATCAGATCCCTGACCAGCGAGGGGTGCATCGGTTTGTCGACGTAGAACGCCA- 1238 Query 26084 ATGCGCCT-CGGCCATCGTGTCGGCAATCACCTGCGCCGTGCGGGTGTAGTTTTCAAACG 26142 ||||| |||| || |||||||| | | |||||| ||||| ||| | || || | Sbjct 1239 ---CGCCTTCGGCGATGGTGTCGGCCAGGATCTGCGCGGTGCGCGTGGCCGTCTCGAAGG 1295 Query 26143 CAAACAGCGGATCGTCGCTACAGGTGCGGTTGCCCCAGAAGCGGAAGCCATCTTTACGG- 26201 | |||| || || || ||||| ||||||||||| ||| | | ||| Sbjct 1296 CGAACATGTTGTCCTCCGCGCACGTGCGCGATCCCCAGAAGCGCTGGCCGT-TGAACGTC 1354 Query 26202 ATCAGGGTGGTAACGCATGCCTCGTTGAGCAGGTCGGCGTCGGTGCCGGTCTGCTGCAAA 26261 | ||| ||||| | | |||||||||| | | |||| |||||| | | | ||||| | Sbjct 1355 ACCAGCGTGGTGATGTCGCCCTCGTTGAGGATGCCGGCATCGGTGGCCGGATCCTGCAGA 1414 Query 26262 TCCCAGAAGACCGAGGCGGAAATGCCGGTCACACCGTTAACGCCAACGTTGGACAGGGTT 26321 ||||| || ||| |||||||| || || ||| |||||||||||| | Sbjct 1415 TCCCAATGCACATCCTTGGAGATGCCGGTGACGCCAGCCACGGGCACGTTGGACAGGCTC 1474 Query 26322 TTGTGCCAGCCGGTGTCGGTGTCGATTTTTGCCCGCAGGCCCAGCGCTCGGGCGGTGGCG 26381 ||||||||||| ||||||||||| || || |||||||| ||||| || || ||||| Sbjct 1475 TTGTGCCAGCCCTGTTCGGTGTCGATCTTGGCACGCAGGCCGAGCGCACGCGCAGTGGCA 1534 Query 26382 TACGC 26386 || || Sbjct 1535 TATGC 1539 >seq6336 Length=1727 Score = 152 bits (168), Expect = 1e-32 Identities = 242/343 (71%), Gaps = 13/343 (4%) Strand=Plus/Plus Query 10733 CGTCAGATTGAACGCCTCGCCCGCGTGGAGCGCTACCGCAGCAGCGGCAACGAGGCCGAT 10792 || ||| | || |||| || ||| | ||||||||| || |||||||||| |||||| Sbjct 1026 CGGCAGTTGGAGCGCCAGGCGCGCATCCAGCGCTACCAAGGCGGCGGCAACGAAGCCGAT 1085 Query 10793 CTGAATCCGAACGTACGCAACCGTAACAAAGGCGAGCGCCA--GCCGGTCGTGAAG---A 10847 ||||||||| || ||| || ||| || |||||| | ||| | Sbjct 1086 CTGAATCCGGCTGTCGCCAATCGCAAC----GCT-GCGCCAAAGAAAAAACCCAAGCGCA 1140 Query 10848 ACGTCTTCAGCGACGAGCAGGCGGAAAAGCTGACCGGCCTGTTTATGGATAACTGCTTTG 10907 ||| ||||| || || |||| || |||||||| | ||| | || |||||| | Sbjct 1141 ACGACTTCACTGAAGAACAGGTCGAGCAGCTGACCACCGCGTTCGTCGACGGCTGCTTCG 1200 Query 10908 AATATCAGCTCAACTGGCACAAAGCCGGACTGGATCACCGTATCCGCAACATCCTGAAGT 10967 | || |||| | | ||| || ||||| || | | | ||||| |||||| |||| Sbjct 1201 ACTACCAGCGCGATTGGTACCGGGCCGGCAACGAGCGC---ACCCGCATCATCCTCAAGT 1257 Query 10968 CGCGCCAGATAGGTGCCACGTTCTACTTTGCCCGCGAGGCGCTGATTGACGCGCTGACCA 11027 |||||||||| ||||| ||||| ||||| || ||||| |||||||| || ||||| |||| Sbjct 1258 CGCGCCAGATCGGTGCAACGTTTTACTTCGCTCGCGAAGCGCTGATCGATGCGCTCACCA 1317 Query 11028 CCGGGCGCAACCAGATATTTTTGTCGGCCAGCAAGGCGCAGGC 11070 |||||||||| ||||| || ||| ||| |||||||||||| Sbjct 1318 CCGGGCGCAATCAGATTTTCTTGAGCGCCTCCAAGGCGCAGGC 1360 Score = 109 bits (120), Expect = 1e-19 Identities = 160/225 (71%), Gaps = 11/225 (5%) Strand=Plus/Plus Query 11171 CTTGGCACCAACGTGCGCACCGCGCAGAGCTACACCGGCAACCTGTATCTCGATGAATAT 11230 || || ||||| | |||||||| ||| ||||| |||||| | || |||| |||| Sbjct 1362 CTCGGGACCAATGCACGCACCGCCCAGGGCTACCACGGCAATTTCTACTTCGACGAATTC 1421 Query 11231 TTCTGGA--TACCGAAATTCCAGGAGCTGCGAAAGGTCGCCAGCGGCATGTCGCTGCATA 11288 ||||||| ||| | ||| | || || |||||||||||||||||| || |||| | Sbjct 1422 TTCTGGACCTACGGG--TTCAACGAATTGAACAAGGTCGCCAGCGGCATGGCGATGCACA 1479 Query 11289 AAAAGTGGCGCACCACCTACTTTTCCACGCCGTCGAGCCTGTCGCACTCCGCTTATCCGT 11348 | |||||||||| |||||||| ||| || |||||| || | ||| || || ||| Sbjct 1480 AGAAGTGGCGCAAGACCTACTTCAGCACACCATCGAGCATGGCCCACGAGGCCTACACGT 1539 Query 11349 TCTGGTCGGGCGAGCTGTTCAACAAAG-------GGCGGCGCAGC 11386 | ||| | ||||||| |||||| | ||||||||||| Sbjct 1540 TTTGGACCGGCGAGCGCCGCAACAAGGGCAAGCCGGCGGCGCAGC 1584 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 94469639653032