Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414525.1_2020 15-10-27] 12,086 sequences; 74,456,230 total letters Query= NC_020080.1 Length=174413 Score E Sequences producing significant alignments: (Bits) Value seq5177 107 2e-18 >seq5177 Length=2144 Score = 107 bits (118), Expect = 2e-18 Identities = 243/362 (67%), Gaps = 4/362 (1%) Strand=Plus/Plus Query 42206 GTTGCACGTTATGAATCGCAGAAACACAAAGTTTTCGAAAGCCTGACGCAAAAACAGCTT 42265 || || || ||||| ||||||| || || ||||||| |||| | ||||| || Sbjct 37 GTGGCGCGGTATGACCAGCAGAAATACCCGGTATTCGAAAAACTGATCGAGAAACAACTG 96 Query 42266 TCTTTCTTCTGGCGTCCGGAAGAAGTCGATCTGTCTACTGACCGTATGCAGTATGCAAAA 42325 || |||||||||||||||||||| || ||| |||| |||||| | ||| Sbjct 97 TCATTCTTCTGGCGTCCGGAAGAGGTGGATGTGTCACAGGACCGTTCTGATTATCAGGGC 156 Query 42326 CTTCCTGAACATGAAAAAATCATTTTCGATTCTAACCTACAGTATCAAACCCTGTTAGAT 42385 || || || |||||||| ||| ||| ||||| |||| || || ||| | ||| Sbjct 157 CTGCCCGAGCATGAAAAGCACATCTTCATCAGCAACCTTAAGTACCAGACGCTGCTGGAT 216 Query 42386 ACCATTCAGGGACGTGGGCCTAACCTCGCATTTTTGCCAATTGCATCCGATG--TGAGCA 42443 |||| ||||| ||| | |||||| | || || | || | | | | || |||| | Sbjct 217 TCCATCCAGGGCCGTAGCCCTAACGTGGCTTTGCTACCGCTGGTGT-CATTGCCTGAG-A 274 Query 42444 TGGAAACCTGGATCGAAACGTGGGCGTTTAGTGAAACCATCCACAGCCGTAGTTACACGC 42503 | ||||||||||| ||||| ||||||||| || ||||| ||| || ||||| | Sbjct 275 TTGAAACCTGGATAGAAACCTGGGCGTTTTCCGAGACCATACACTCGCGCTCGTACACCC 334 Query 42504 ATATTCAACGTAACTTGCACATTGATCCTTCTGTACAGTTCGACCAAATCCTTCGCAATG 42563 |||| || ||| | || |||||| || | || || | ||| | ||||||| Sbjct 335 ATATCATCCGCAACATCGTCAATGATCCCTCCATCATTTTTGATGACATCGTGCGCAATG 394 Query 42564 AA 42565 || Sbjct 395 AA 396 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 557909301116880