Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414525.1_2020
15-10-27] 12,086 sequences; 74,456,230 total letters
Query= NC_020080.1
Length=174413
Score E
Sequences producing significant alignments: (Bits) Value
seq5177 107 2e-18
>seq5177
Length=2144
Score = 107 bits (118), Expect = 2e-18
Identities = 243/362 (67%), Gaps = 4/362 (1%)
Strand=Plus/Plus
Query 42206 GTTGCACGTTATGAATCGCAGAAACACAAAGTTTTCGAAAGCCTGACGCAAAAACAGCTT 42265
|| || || ||||| ||||||| || || ||||||| |||| | ||||| ||
Sbjct 37 GTGGCGCGGTATGACCAGCAGAAATACCCGGTATTCGAAAAACTGATCGAGAAACAACTG 96
Query 42266 TCTTTCTTCTGGCGTCCGGAAGAAGTCGATCTGTCTACTGACCGTATGCAGTATGCAAAA 42325
|| |||||||||||||||||||| || ||| |||| |||||| | |||
Sbjct 97 TCATTCTTCTGGCGTCCGGAAGAGGTGGATGTGTCACAGGACCGTTCTGATTATCAGGGC 156
Query 42326 CTTCCTGAACATGAAAAAATCATTTTCGATTCTAACCTACAGTATCAAACCCTGTTAGAT 42385
|| || || |||||||| ||| ||| ||||| |||| || || ||| | |||
Sbjct 157 CTGCCCGAGCATGAAAAGCACATCTTCATCAGCAACCTTAAGTACCAGACGCTGCTGGAT 216
Query 42386 ACCATTCAGGGACGTGGGCCTAACCTCGCATTTTTGCCAATTGCATCCGATG--TGAGCA 42443
|||| ||||| ||| | |||||| | || || | || | | | | || |||| |
Sbjct 217 TCCATCCAGGGCCGTAGCCCTAACGTGGCTTTGCTACCGCTGGTGT-CATTGCCTGAG-A 274
Query 42444 TGGAAACCTGGATCGAAACGTGGGCGTTTAGTGAAACCATCCACAGCCGTAGTTACACGC 42503
| ||||||||||| ||||| ||||||||| || ||||| ||| || ||||| |
Sbjct 275 TTGAAACCTGGATAGAAACCTGGGCGTTTTCCGAGACCATACACTCGCGCTCGTACACCC 334
Query 42504 ATATTCAACGTAACTTGCACATTGATCCTTCTGTACAGTTCGACCAAATCCTTCGCAATG 42563
|||| || ||| | || |||||| || | || || | ||| | |||||||
Sbjct 335 ATATCATCCGCAACATCGTCAATGATCCCTCCATCATTTTTGATGACATCGTGCGCAATG 394
Query 42564 AA 42565
||
Sbjct 395 AA 396
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 557909301116880
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |