Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414525.1_2020 15-10-27] 12,086 sequences; 74,456,230 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq3384 134 9e-26 >seq3384 Length=3776 Score = 134 bits (148), Expect = 9e-26 Identities = 155/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 474666 AAATTTCTTCAATGGTTTTAGCCAAAATGAAACAAACCGCGAGCTCATATCTTGGACAAG 474725 ||||||| ||||| |||| | || ||||| | ||| ||||||| ||||| Sbjct 3710 AAATTTCAGCAATGATTTTGTCTAAGCTGAAAGCAGATGCGGAAGCATATCTCGGACAGC 3651 Query 474726 AAGTAACTGATGCAGTAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAA 474785 |||||| || || || ||||| || || ||||| || |||||| | || ||||| |||| Sbjct 3650 CAGTAACAGAAGCTGTGATTACAGTACCTGCATACTTCAATGATGCGCAGCGTCAGGCAA 3591 Query 474786 CTAAAGATGCGGGAAGAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAG 474845 |||| ||||| || | || ||||| ||| | || ||||||||||||||| || || | Sbjct 3590 CTAAGGATGCTGGTAAGATCGCAGGACTTGAAGTACGACGTATTATTAATGAGCCTACTG 3531 Query 474846 CAGCCGCACTTGCTTATGGTCTTGATAAG 474874 |||| || ||||| || ||||| |||||| Sbjct 3530 CAGCAGCGCTTGCCTACGGTCTAGATAAG 3502 Score = 98.7 bits (108), Expect = 6e-15 Identities = 190/278 (68%), Gaps = 2/278 (1%) Strand=Plus/Minus Query 475886 GACGTAACTCCACTTTCATTAGGTCTTGAAACAGTTGGAGGGATTATGACTAATCTTATT 475945 ||||| ||||||||||| | || |||| || | ||||| || || || ||||| Sbjct 2886 GACGTTACTCCACTTTCTCTCAGTATTGAGACTATGGGAGGTATCGCTACGAAGATTATT 2827 Query 475946 GACAGAAATACTCCTATCCCATGCAAAAAA-TCAAAAGTATTTTCCACTTATTCTGATAA 476004 || |||||||| | || || | || || ||| | || || || || |||||| Sbjct 2826 GAAAGAAATACGACGATTCC-TACATCCAAGTCACAGGTGTTCTCTACAGCAGCTGATAG 2768 Query 476005 TCAAACAACTGTAACCATCCAAATCTTTGAAGGTGAAAGAAAATTCACTAAAGATAATAA 476064 ||| || | || ||| | | | | ||||||||| | ||| | ||||||||||| Sbjct 2767 TCAGCCAGCAGTGGAAATCAATGTGGTACAGGGTGAAAGAGAGTTCGCAAAAGATAATAA 2708 Query 476065 CAAACTTGGAACTTTTAATCTTGAAGGTATTCCTCCTGCTCCCAGAGGAGTTCCTCAAAT 476124 ||| ||| || || || |||||||| || ||||| |||| | ||||| || Sbjct 2707 AGGACTCGGACGATTCGTGCTGGATGGTATTCCACCAGCTCCACGAGGTATGCCTCAGAT 2648 Query 476125 TGAAGTTACTTTTGATATTGATGCAAATGGTATTCTTA 476162 ||||| || |||||| ||||||| || ||||| |||| Sbjct 2647 CGAAGTAACATTTGATCTTGATGCCAACGGTATCCTTA 2610 Score = 91.5 bits (100), Expect = 1e-12 Identities = 89/115 (77%), Gaps = 0/115 (0%) Strand=Plus/Plus Query 290843 GCTGCTGTTGGTTCATTTATAATTCTTAATACATCAAGACCTGCAATTTTTGCCGAATCT 290902 ||||| || || ||||| ||||| | | ||| ||||| ||||| || || | | ||| Sbjct 3527 GCTGCAGTAGGCTCATTAATAATACGTCGTACTTCAAGTCCTGCGATCTTACCAGCATCC 3586 Query 290903 AAAGTTGCCTGGCGTTGCGCATCATTAAAATAAGCAGGGACTGTAATAACAGCTT 290957 ||||||||| || ||||||||||| || || ||||| |||||||| ||||||| Sbjct 3587 TTAGTTGCCTGACGCTGCGCATCATTGAAGTATGCAGGTACTGTAATCACAGCTT 3641 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3267660772818728