Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414525.1_2020 15-10-27] 12,086 sequences; 74,456,230 total letters Query= NC_020201.1 Length=142349 Score E Sequences producing significant alignments: (Bits) Value seq5177 145 7e-30 seq7821 91.5 1e-13 >seq5177 Length=2144 Score = 145 bits (160), Expect = 7e-30 Identities = 208/293 (71%), Gaps = 0/293 (0%) Strand=Plus/Minus Query 76461 AACGCCCAAGTCTCTACCCATGTTTCCAGGGTGGTGTCGGATACGATCGGCAGAAGAACT 76520 |||||||| || |||| ||| ||||| | | || || | ||| || | | | Sbjct 302 AACGCCCAGGTTTCTATCCAGGTTTCAATCTCAGGCAATGACACCAGCGGTAGCAAAGCC 243 Query 76521 GCGTTCGGCCCACGGCCCTGTACAGAATCCAGGAGGATCTGGTACTTCAGGTTGCTGATG 76580 |||| || | ||||||||| | |||||||| || |||||||||| |||||||||||| Sbjct 242 ACGTTAGGGCTACGGCCCTGGATGGAATCCAGCAGCGTCTGGTACTTAAGGTTGCTGATG 183 Query 76581 AAGATGTGCTTCTCGTGATCCGGCAGGTTCATGTAGTCGATTCGGTCACGGGTCACGTTA 76640 ||||||||||| || || || |||||| | || || ||||| | | ||| | Sbjct 182 AAGATGTGCTTTTCATGCTCGGGCAGGCCCTGATAATCAGAACGGTCCTGTGACACATCC 123 Query 76641 ACTTCTTCAGGTCGCCAGAAGAACGCCAGTTGCTTTTCAATCAGCTTCTCGAACTTCGCA 76700 || ||||| || ||||||||||| | |||||| || || ||||| || ||||| || Sbjct 122 ACCTCTTCCGGACGCCAGAAGAATGACAGTTGTTTCTCGATCAGTTTTTCGAATACCGGG 63 Query 76701 TGTTTCTGCTGGTCGTAGCGAGAAACGTTCGGTGTCTCTCCGAGGAACATCGG 76753 | |||||||||||| || || | ||||| | || || | ||||||||| Sbjct 62 TATTTCTGCTGGTCATACCGCGCCACGTTGACGGGCTGACCAAAGAACATCGG 10 Score = 141 bits (156), Expect = 8e-29 Identities = 117/143 (82%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 75117 TTCAGCATATACTGGGTGCCGGACAAATGCAAGGCTTCATCACGAGCAATCAGTTCGATA 75176 || ||||| | ||||||||||| || |||| |||||||||||| |||||||| ||| Sbjct 713 TTGAGCATGTGCTGGGTGCCGGTCAGGTGCAGGGCTTCATCACGCGCAATCAGGCGGATG 654 Query 75177 ATGTTGGTGTTGCCCAGCATTACCCCGCGCTCACCGAAGGCGAAGGAGCAGGCAAAGCTC 75236 || |||| |||||| ||| ||| |||||| | |||||||| |||||||| ||||| Sbjct 653 ATCTTGGCGTTGCCTTCCATCACCTTGCGCTCGGCAAAGGCGAATGAGCAGGCGAAGCTG 594 Query 75237 ACGTAGAAGCGGATCGCTTCCAG 75259 ||||||||||||||||||||||| Sbjct 593 ACGTAGAAGCGGATCGCTTCCAG 571 >seq7821 Length=1406 Score = 91.5 bits (100), Expect = 1e-13 Identities = 164/240 (68%), Gaps = 0/240 (0%) Strand=Plus/Plus Query 77753 GGATTTCTTGAAGGAAATCGCATCACGAGGGGGCTCGAATCCGTTGGTGGAGTTGGTGAT 77812 ||||| ||||| ||| | | | || || || || | || ||||||| ||||| ||| Sbjct 664 GGATTGCTTGACGGATACCAGGCCGCGCGGTGGTTCAATACCATTGGTGGCGTTGGCGAT 723 Query 77813 TTGGCTGGATGTCTCGCAAGGCATCATCGTGGACAGCGTGGAGTTACGCAGGCCATGAAT 77872 |||||||| || || | ||||| | || | ||| |||||||| |||||||||| | Sbjct 724 CTGGCTGGAGGTTTCTGATGGCATTAACGCAGTCAGGGTGGAGTTGCGCAGGCCATCTTT 783 Query 77873 GGCGATGTCGATACGCAGCTTTTCCCAATCCATCTTCAGTTCCGCAGTGTGGAGTCCATC 77932 || ||| ||||||| |||||||||||| | || | | | || | |||| Sbjct 784 TTGAATCTCGGTACGCAGGCTTTCCCAATCCAGCAGCAATGGCTCGCTGCAAACGGCATC 843 Query 77933 CACTTCTTTCTTGTAACGGTCGATCGGTAGAATACCCTGAGAGTAGGTGGTCTCGTGGAA 77992 || || || || || || ||||| || ||||| | | ||| ||||| || ||||| Sbjct 844 CAGATCCTTTTTATAGGTATCAATCGGCAGGATACCTTTGGCGTAAGTGGTTTCCTGGAA 903 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 455320002137040