Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414525.1_2020 15-10-27] 12,086 sequences; 74,456,230 total letters Query= NC_020837.1 Length=198013 Score E Sequences producing significant alignments: (Bits) Value seq5177 98.7 1e-15 >seq5177 Length=2144 Score = 98.7 bits (108), Expect = 1e-15 Identities = 95/122 (78%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 116025 TCATCACGAGCAATCAGACCGATGATCTTTGCATTGCCTTCCATCATCTTGAGTTCACCA 116084 |||||||| |||||||| | ||||||||| || ||||||||||||| |||| | || || Sbjct 677 TCATCACGCGCAATCAGGCGGATGATCTTGGCGTTGCCTTCCATCACCTTGCGCTCGGCA 618 Query 116085 AAAGCAAACGAGCAAGCGAAAGAAACATAGAAACGAATACCCTCAAGGATATACACATTC 116144 || || || ||||| ||||| || ||||| || || | || ||||||| ||| ||| Sbjct 617 AAGGCGAATGAGCAGGCGAAGCTGACGTAGAAGCGGATCGCTTCCAGGATATTCACGTTC 558 Query 116145 AT 116146 || Sbjct 557 AT 556 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633417891932880