Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414525.1_2020 15-10-27] 12,086 sequences; 74,456,230 total letters Query= NC_020842.1 Length=79114 Score E Sequences producing significant alignments: (Bits) Value seq3759 165 4e-36 seq75 156 2e-33 >seq3759 Length=3256 Score = 165 bits (182), Expect = 4e-36 Identities = 167/214 (78%), Gaps = 5/214 (2%) Strand=Plus/Minus Query 25906 CCAATCAGCATTTTGCTCAACTTTCTCCATAAATAAATCTGGAATCCACATTGCATAAAA 25965 |||||| |||| || || ||||||||||||| |||||| | ||| | | | ||||| Sbjct 1491 CCAATCGGCATCGGCCTTTACCTTCTCCATAAATAGATCTGGCACCCAAAGTCCGTAAAA 1432 Query 25966 TAAATCTCTCGCTCTCATTTCTTCTTTTCCGTGATTCTTTTTTAGATCTAAGAAATCAAA 26025 ||||||||||||| ||||||||||||||| ||||| || ||||| | || ||||| Sbjct 1431 CAAATCTCTCGCTCGCATTTCTTCTTTTCCATGATTTTTACGAAGATCCAGAAACTCAAA 1372 Query 26026 AATATCTGAGTGCCATGGTTCTAAATAGATAGCAAA-ACTACCTTTTCTTTTTCCTCCAC 26084 ||||||| ||||| || || | ||| |||||||| ||| ||||| ||||||||| Sbjct 1371 GATATCTGCATGCCAAGGCTCCAGATATATAGCAAATACTCCCTTT-CTTTTTCCT---G 1316 Query 26085 CTTGATCTACGTATCTTGCAGTTTCATTGAAAAC 26118 | |||||||| ||||| |||||||| ||||| || Sbjct 1315 CCTGATCTACATATCTCGCAGTTTCGTTGAACAC 1282 >seq75 Length=61118 Score = 156 bits (172), Expect = 2e-33 Identities = 322/474 (68%), Gaps = 4/474 (1%) Strand=Plus/Plus Query 25888 ATTTGGACAGAATAAATGCCAATCAGCATTTTGCTCAACTTTCTCCATAAATAAATCTGG 25947 |||||||||||| ||| ||| | | ||||| || || | ||| |||| ||| || Sbjct 21647 ATTTGGACAGAACAAACTCCACTTACCATTTGCTTCCACCCGTTTCATGAATAGATCGGG 21706 Query 25948 AATCCACATTGCATAAAATAAATCTCTCGCTCTCATTTCTTCTTTTCCGTGATTCTTTTT 26007 | ||||| ||| | || || || | ||| | ||| || || ||||| || Sbjct 21707 TACCCACAACGCAAAGAACAAGTCCCGCGCCCGATGGAGTTCATTGCCATGATTTTTCCG 21766 Query 26008 TAGATCTAAGAAATCAAAAATATCTGAGTGCCATGGTTCTAAATAGATAGCAAAACTACC 26067 | ||| | || ||||| | |||| |||||| ||||| || ||||| ||||| || Sbjct 21767 CAAATCGAGAAACTCAAACACGTCTGCGTGCCACGGTTCCAAGTAGATCGCAAACGATCC 21826 Query 26068 TTTTCTTTTTCCTCCACCTTGATCTACGTATCTTGCAGTTTCATTGAAAACTTTCAACAT 26127 ||| | ||| || ||||||||||| ||||||| ||| || ||||| || || | ||| Sbjct 21827 TTTGCGTTTGCCGCCACCTTGATCCACGTATCGTGCCGTGTCATTAAACACGCGAAGCAT 21886 Query 26128 TGGAACTAATCCAGTT-GAAAATCCGTTTGTGCTATGAATCTTG-GATCCTGTCGATCTA 26185 || | |||||| ||| ||| | || || |||| |||| | | || | || | | Sbjct 21887 GGGGA-TAATCCCGTTCGAAGAGCCATTAGTGCCTCGAATGTAGCTATTC-GTGGCCCGG 21944 Query 26186 ATATCGTGAGCATGAATACCGATTCCACCAGCCCATTTTGAAATAGCTGCACAATCTGAA 26245 |||| ||| | ||| || || || || |||||||| ||||| ||||| | | Sbjct 21945 ATATTGTGCATACTAATGCCAATCCCTCCTGCCCATTTCGAAATGCACGCACATTGTTTC 22004 Query 26246 ACTGTATCGAAAATTCCTTTTATGCTATCACCTTTCATTCCTAATAAAAAACAAGAAGAT 26305 | ||||| | ||||||| ||| |||| ||||||| | |||||||| || ||||| Sbjct 22005 AAGGTATCATAGATTCCTTCAATGGAATCATCTTTCATAGCCAATAAAAAGCACGAAGAC 22064 Query 26306 AATTGCGAATGAGTTGTTCCTGAATTAAATAATGTCGGTGTAGCATGAGTATAA 26359 ||||| | ||| || || | |||||| | ||||| || ||||| ||| || Sbjct 22065 AATTGGGGGCGAGGGGTACCGGCATTAAACAGCGTCGGGGTCGCATGGGTAAAA 22118 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 253002727682450