Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414525.1_2020 15-10-27] 12,086 sequences; 74,456,230 total letters Query= NC_020871.1 Length=133057 Score E Sequences producing significant alignments: (Bits) Value seq6608 95.1 1e-14 seq4439 82.4 6e-11 >seq6608 Length=1660 Score = 95.1 bits (104), Expect = 1e-14 Identities = 93/120 (78%), Gaps = 0/120 (0%) Strand=Plus/Plus Query 89422 GGTATCGTAAACTGGAACGATATTCGGTATCCGTCTTTCTATCGAGCTTACAAAGAGTTA 89481 || ||| | ||||||||||| |||| ||| ||||| |||||||| || ||||| ||| | Sbjct 1474 GGCATCCTCAACTGGAACGACATTCCGTACCCGTCCTTCTATCGGGCGTACAAGGAGCTG 1533 Query 89482 ACTACAAATTACTGGTTGCCTGATGAGGTAGACATGAAGAGCGATGCCAAGCAGTACAAC 89541 | || || | |||| | || || ||||| ||||||||| ||||||| ||||||||| Sbjct 1534 TCGACCAACTTCTGGATCCCCGACGAGGTGGACATGAAGGGCGATGCGCGCCAGTACAAC 1593 >seq4439 Length=2591 Score = 82.4 bits (90), Expect = 6e-11 Identities = 84/110 (76%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 90262 ATGACATGGATTAAAGCTTACGCCGATAACTTTACAGAAACAAAAACCGACTTTTTCGAA 90321 ||| | ||||| || || |||||||| ||||| || ||||| || |||||||| ||||| Sbjct 2049 ATGCCGTGGATCAAGGCCTACGCCGACAACTTCACCGAAACCAAGACCGACTTCTTCGAG 1990 Query 90322 ATGCGTAACTCTAGTTACAAGAAAACAAACTTAGACAATGGGTTCGATGA 90371 ||||| || | |||||||| || || | || ||||||||||| || Sbjct 1989 ATGCGCAATGCGTCGTACAAGAAGACCAATTCGGATAATGGGTTCGACGA 1940 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 425594901433628