Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414525.1_2020 15-10-27] 12,086 sequences; 74,456,230 total letters Query= NC_021073.1 Length=107218 Score E Sequences producing significant alignments: (Bits) Value seq5177 289 2e-73 seq7821 154 1e-32 >seq5177 Length=2144 Score = 289 bits (320), Expect = 2e-73 Identities = 705/1063 (66%), Gaps = 40/1063 (4%) Strand=Plus/Plus Query 10952 CTGAAGGAGCCGATGTTCTTCGGCCAATCAGTTAACGTATCCCGTTACGACCAACAGAAA 11011 || || || ||||||||||| || || | || ||||| | || || ||||| |||||| Sbjct 1 CTCAAAGAACCGATGTTCTTTGGTCAGCCCGTCAACGTGGCGCGGTATGACCAGCAGAAA 60 Query 11012 CATGATGTTTTTGAGAAACTAACTCAGAAGCAACTATCATTCTTCTGGCGTCCCGAAGAA 11071 | || || || ||||| | |||| ||||| ||||||||||||||||| ||||| Sbjct 61 TACCCGGTATTCGAAAAACTGATCGAGAAACAACTGTCATTCTTCTGGCGTCCGGAAGAG 120 Query 11072 GTTGATGTGTCACAAGACCGAATCGACTA-CAGTAAAATGACTGATGCGGAGAAACACAT 11130 || ||||||||||| ||||| || || ||| || | || || || ||||| Sbjct 121 GTGGATGTGTCACAGGACCGTTCTGATTATCAGGGCC-TGCCCGAGCATGAAAAGCACAT 179 Query 11131 CTTCATTAGTAACCTGAAGTACCAAACATTACTCGACTCGATCCAAGGCCGTAGCCCGAA 11190 |||||| || ||||| |||||||| || | || || || ||||| ||||||||||| || Sbjct 180 CTTCATCAGCAACCTTAAGTACCAGACGCTGCTGGATTCCATCCAGGGCCGTAGCCCTAA 239 Query 11191 TATGGCGTTCCTGCCTATTGTGTCACTACCAGAAGTCGAAACTTGGGTAGAAACGTGGAG 11250 |||| || || || | |||||| | || || | ||||| ||| ||||||| ||| Sbjct 240 CGTGGCTTTGCTACCGCTGGTGTCATTGCCTGAGATTGAAACCTGGATAGAAACCTGGGC 299 Query 11251 CTTCAGCGAAACCATCCACTCTCGTTCATACACACACATCATTCGCAATATTGTCAATGA 11310 || ||| ||||| ||||| || || ||||| || ||||| ||||| || |||||||| Sbjct 300 GTTTTCCGAGACCATACACTCGCGCTCGTACACCCATATCATCCGCAACATCGTCAATGA 359 Query 11311 CCCTAGTATTGTGTTCGATGATGTTGTTGAGAATAAGCACATCCTAGAGCGAGCTAAAGA 11370 || || | || ||||| | || ||| | ||||| | ||| || || Sbjct 360 TCCCTCCATCATTTTTGATGACATCGTGCGCAATGAAAACATCACCGCGCGCGCATCGGA 419 Query 11371 TATTGCTCGTTACTACGACGATCTCAT---------CTTG--GCATGCAAA-------GA 11412 ||| || | ||| ||||| || || || | || | || || | || Sbjct 420 TATCGCGCATTATTACGATGAACTGATCCACCAGACCATGCTGTATTCACAGCTGGGCGA 479 Query 11413 GCATGAGC------TAAACGGC-AAAC--------ACACAATGCGCGACCTAAAGAAAAA 11457 ||||| | || ||| |||| || | ||||| || || ||| Sbjct 480 AGGTGAGCACATCATCAATGGCGAAACCAAATCGGTCAACAAACGCGAGCTGAAAAAACT 539 Query 11458 GTTGTACTTGTGCATGATGGCTGTTAATGTATTAGAAGCAGTTCGTTTCTACGTTAGTTT 11517 | | ||| ||| ||||| || ||| | | ||||| | || |||||||| || || Sbjct 540 GCTTTACCGCTGCCTGATGAACGTGAATATCCTGGAAGCGATCCGCTTCTACGTCAGCTT 599 Query 11518 CGCTTGTTCATTTGCATTCGCTGAACGCGAGATTATGGAAGGTAATGCTAAAATCATCAA 11577 ||| || ||||| || || || || ||| || | |||||||| || || || |||||| Sbjct 600 CGCCTGCTCATTCGCCTTTGCCGAGCGCAAGGTGATGGAAGGCAACGCCAAGATCATCCG 659 Query 11578 GCTTATTGCTCGTGATGAAGCACTACACCAAAGCGGTACACAGCACATGCTGAAGATGTG 11637 || ||||| ||||||||||| || |||| | ||| || ||||||||||| || || Sbjct 660 CCTGATTGCGCGTGATGAAGCCCTGCACCTGACCGGCACCCAGCACATGCTCAACATCAT 719 Query 11638 GAACAACGGCACCGATGATATGGAAATGGCTTCTATCGCACATGAGTGTCGCGAAGAGTC 11697 | ||| || || || | || || || ||| | | |||||| Sbjct 720 GCGTTCCGGTCAAGACGACCCCGAGTTCGCCGAGATTGCCGCTGAATTGCATCAAGAGTG 779 Query 11698 AATCGAAATATTCAAGATGGCCGAAGAACAAGAGAAAGACTGGGCAAACTATCTATTCAA 11757 |||| || ||||| | |||| || || || ||| | |||||| | || || || || Sbjct 780 TTTCGAGATGTTCAAAACCGCCGCCGAGCAGGAAAAACAATGGGCAGAATACCTGTTTAA 839 Query 11758 AGATGGTGGTATGATCGGACTAAACAAAGATATTCTATGTGAATATGTTGAGTACATCAC 11817 |||||| ||||| || || |||||||| || || || | |||||||| |||||||| Sbjct 840 AGATGGCTCCATGATAGGCCTGAACAAAGACATCCTCTGCCAGTATGTTGAATACATCAC 899 Query 11818 AAGCCACCGAATGAAGTATGTCGGGCTACC-TCCGCTACACCCGGAAGC---AACTAACC 11873 | | ||| ||| | || || | || |||| | ||| | || || |||| Sbjct 900 CAACAGCCGTATGGCCTCGGTTGGTTTGCCAGCCGC-ATTCCCCAATGCCAAAAGCAACC 958 Query 11874 CAATCCCATGGATCAACAACTGGTTGGTTAGTGATAATGTTCAAGTTGCTCCACAGGAAG 11933 | || ||||||||||||| |||| ||| |||| || ||||| || || ||||||| Sbjct 959 CGATTCCATGGATCAACACCTGGCTGGCGTCAGATACCGTACAAGTCGCCCCGCAGGAAG 1018 Query 11934 CCGAGATTAGTTCATACCTAACCGCACAAGTTGACTCGGACAT 11976 || | || || ||||| | || || |||| || || || Sbjct 1019 TAGAACTCAGCTCCTACCTGATCGGTCAGATTGATTCAGAAAT 1061 >seq7821 Length=1406 Score = 154 bits (170), Expect = 1e-32 Identities = 694/1086 (64%), Gaps = 39/1086 (4%) Strand=Plus/Minus Query 9839 ATGCAAGAGCGTGCTTCTACAGGTCGCATCTACATTCAGCACGTAGATCACTGTAACATT 9898 ||||| || ||||| ||| || || |||||||| ||| ||||||| || || |||| Sbjct 1398 ATGCAGGAACGTGCCGGTACTGGCCGTATCTACATCCAGAACGTAGACCATTGCAACACG 1339 Query 9899 AACGGTCCTTTCGATG-AGCGCGTTGCACCAGTACGCCAATCAAACCTATGTATGGAAAT 9957 || | || || ||| ||| ||||| ||||| || ||||| ||||| || ||||| || Sbjct 1338 CACAGCCCGTTTGATCCAGCT-GTTGCGCCAGTGCGTCAATCCAACCTGTGCATGGAGAT 1280 Query 9958 CGCACTACCAACCAAACCGTTGAATAACGTCGATGATCCTGATGGTGAAGTTGCGCTATG 10017 ||| || || ||||| | ||||| || | | ||| | || || ||| | ||||| || Sbjct 1279 CGCGCTGCCGACCAACGCCCTGAATGACATTAACGATACCGAGGGCGAAATCGCGCTTTG 1220 Query 10018 TACTCTATCTGCATTCAACTTGGGTAAGATTGAATCGGTTGGTGATTTTGAGCGTCTGTC 10077 ||| |||| || |||||| ||||| | | || || | | || | || | ||| | Sbjct 1219 TACCTTATCCGCCTTCAACCTGGGTGCGCTGGAGTCACTGGACGAACTGGAAGGCCTGGC 1160 Query 10078 TCGTATCGTTGTGCGTGCATTGGATAATCTGTTAGACTACCAAAACTACCCATTACCTGC 10137 | || ||||||||| ||||| ||| | || || || | ||||| || || Sbjct 1159 CGACCTGGTGGTGCGTGCACTGGATGCGCTGCTCGAGTATCAGGATTACCCGGTAAAAGC 1100 Query 10138 CGC----AGAACGTTCGACAATGCGCAGACGTAGCCTTGGTGTAGGTATTATCAATTACG 10193 ||| || | |||||| ||| ||| || || ||||| | ||||| |||| Sbjct 1099 CGCGCTGAGTGCCACCGACAAA-CGC---CGTTCACTGGGCGTAGGCGTAATCAACTACG 1044 Query 10194 CCCACTGGGTGGCTAAGAATGGCCTAAAATACAGTGACGGTAGCGCAAACAACAAGACGC 10253 | | | |||| || || ||| || |||| || | || | |||| Sbjct 1043 CGTATTACCTGGCGAAAAACGGCACTAACTACACCAGCGATGAAGCGTTGGGCCTAACGC 984 Query 10254 ATG--AGCTGATTGAAGCTATGCAGTTCTACTTGCTACAAGCATCAATGGAACTGGCTAA 10311 | | || ||||||| || ||||||||| |||| | || || | ||||| | Sbjct 983 ACCGCACCT--TTGAAGCGATCCAGTTCTACCTGCTCAAGGCTTCGGTACAACTGTCGCG 926 Query 10312 AGAGAAGGGTATGTGTTCTGGATTCGAAGACACTAAGTATGCCAAAGGTGTTATGCCAGT 10371 ||| || || | ||| | || || | || ||||||||| | |||| | Sbjct 925 TGAGTTTGGCCCATGCGGCGCGTTCCAGGAAACCACTTACGCCAAAGGTATCCTGCCGAT 866 Query 10372 TGATCGTTATAAGTCTGATGTCGACAACACCCACACAGCAGAACTACAGATGAATTGGAA 10431 |||| ||||| ||| | || | || | | | | | || ||||| | Sbjct 865 TGATACCTATAAAAAGGATCTGGATGCCGTTTGCAGCGAGCCATTGCTGCTGGATTGGGA 806 Query 10432 TTGGTTGCGTAATGAGATTGTCCATAATGGCCTACGTAACTCTACTCTATCTGCATTCAT 10491 | |||||| |||||| | ||||||| || ||||| || || |||| || || Sbjct 805 AAGCCTGCGTACCGAGATTCAAAAAGATGGCCTGCGCAACTCCACCCTGACTGCGTTAAT 746 Query 10492 GCCTTCGGAAACATCTTCTCAGGTATCTAACGCAACAAACGGCATCGAACCACCTCGTGG 10551 ||| || ||||| || ||| | | ||||| || || || || |||||||| || || Sbjct 745 GCCATCAGAAACCTCCAGCCAGATCGCCAACGCCACCAATGGTATTGAACCACCGCGCGG 686 Query 10552 CTACATGTCAGTTAAGCAGTCGAAGGATGGCATCTTAAAACAAATCGTACCGGGTTATGA 10611 | | || || ||||| || || || || ||| | || | || || | || Sbjct 685 CCTGGTATCCGTCAAGCAATCCAAAGACGGTATCCTGCGCCAGGTAGTGCCTGAGATCGA 626 Query 10612 TAAATACAAAGACCAATACGAGTTACTATGGAATATCAAAGACAACACTGGTTACTTGGA 10671 ||||| ||| |||| || ||||| || | |||| |||||| | Sbjct 625 CCGCCTGCGTGACCAGTACCAGTTGCTGTGGAAAATGCCAAACAATGAGGGTTACCTCAG 566 Query 10672 ATTGGTTGCCATCATGCAGAAGTTTGTGGATCAGGCTATTTCAGCAAACACTAACTACGA 10731 | |||| | |||||||||||||||||| || ||| | ||||| || ||||| |||||||| Sbjct 565 ACTGGTGGGCATCATGCAGAAGTTTGTCGACCAGTCGATTTCTGCCAACACCAACTACGA 506 Query 10732 CCCAGAAAACTACCC----AGAAAGT---AAGGTTCCAATCAAAAAGTTATTGCAAGATT 10784 || | |||| ||| || || || || || | || ||| |||| | Sbjct 505 CC-------CGACCCGTTTTGAAGGTGGCCGTGTGCCTATGAAGCAATTGTTGAAAGACT 453 Query 10785 TGGTGACATGT-TATAGACTCGGCATCAAGACACTGTACTACCACAACACACGAGATGGT 10843 || || || || || | ||| |||||||| || ||||||||||| ||||| || || ||| Sbjct 452 TGCTG-CAAGTGTACAAACTGGGCATCAAAACGCTGTACTACCATAACACGCGTGACGGT 394 Query 10844 GCTAGTGA----TGAACAGAA--AGAAGACGATGGTGGCTGCGATGGTGGTGGCTGCAAA 10897 || | || | || ||| || || |||||| | ||||| |||| | ||||| Sbjct 393 GCGACAGAAGGCGGCACTGAAGCGGAGGATGATGGTTG-TGCGA--GTGGCGCTTGCAAG 337 Query 10898 ATTTAA 10903 |||||| Sbjct 336 ATTTAA 331 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 342922280749634