Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414525.1_2020
15-10-27] 12,086 sequences; 74,456,230 total letters
Query= NC_021248.1
Length=307691
Score E
Sequences producing significant alignments: (Bits) Value
seq4369 102 2e-16
>seq4369
Length=2652
Score = 102 bits (112), Expect = 2e-16
Identities = 370/582 (64%), Gaps = 10/582 (2%)
Strand=Plus/Minus
Query 49826 TGCAAAATCAGTATGTAAACCCTCGTCCCTAGATATAAATTCATTACTAAAAGTTAATCC 49885
|||||||||| ||||| || ||||| | ||| || ||||||||| ||||| || ||
Sbjct 2618 TGCAAAATCACAATGTACGCCTTCGTCACGAGAAATCAATTCATTAGAGAAAGTCAAACC 2559
Query 49886 TGGCATTAATCCTCTCTTTTTAAGCCAAAATATTGATGCAAAACTACTAGAAAAGAATAT 49945
||||||||| || | ||||| | |||| | || || ||| || || ||||||||
Sbjct 2558 TGGCATTAAACCACGTTTTTTCAACCAATAAATAGAACAGAAAGCACCTGAGAAGAATAT 2499
Query 49946 ACCCTCGACACACGCAAATGCTATTATTCTTGCTCCAAACATTAATTTATCATCTAATAT 50005
||||| || | || || || | | |||| | || ||| || | ||| |||
Sbjct 2498 CCCCTCCACCGCCATGAAGGCAATGAGAC--GCTC--AGCA--AATGTACCCTCTTCTAT 2445
Query 50006 CCAATTTATAGCCCAATCTGCtttttttttGATAGAAGGTATATTTTCTATAGCTTTAAA 50065
||| || | ||||| | |||||| || || | || ||| | |||| || || |||
Sbjct 2444 CCACTTCAGTGCCCATTTTGCTTTCTTCCCAATGGTGGGAATAGTATCTACAGATTGAAA 2385
Query 50066 TAATTCAtttttttCATNNNNNNNNNNNNNNNNNNNNNNNATTAATAAAGAATACATTTC 50125
||| | ||||| || || | ||| || | ||
Sbjct 2384 TAACTTGGCCTTTTCTACCGCATCATTAATATATGTATCAATCAAGAGAGAGTAAGTCTC 2325
Query 50126 AGAATGTACAGCTTCCATAGCTATTTGAAATGAATAAAATTGTCTTGCTTCTGAATACTG 50185
|| ||||| |||||| || |||||| ||| | | ||| || | |||
Sbjct 2324 AGCATGTATGTTTTCCATCATGATCTGAAATCCATAGAGACAACGTGCCTCCGGCACCTG 2265
Query 50186 AACTTCGG--AAAAGAATCGTTCAACTAAATTCTCAGATACAATACCATCAGATGCTGCG 50243
|| || | || | || || ||| |||||| ||| || ||||| | || ||
Sbjct 2264 CACCTCTTTCATAAAATTCA--CAGCTAGGTTCTCATTTACTATCCCATCCGCAGCCGCA 2207
Query 50244 AAGAATGCTAAAACGTATTTAATAAAATGTTTTTCATTATCTTTTAAATTTTCCCAAGAT 50303
||||| || |||| | ||| |||||| |||||| ||| |||| ||| ||||
Sbjct 2206 AAGAACGCCAAAATATGCGAAATGAAATGTCTTTCATCATCATTTAGCCTTTTCCAATCC 2147
Query 50304 TCAAGATCGTTTGATAAATCTACTTCTTCTATTGTCCAAAATGATGCTACGGATTTTTTA 50363
||| || | || ||||| | |||||| |||||||| || ||| | | |||||||
Sbjct 2146 GCAAAGTCATCGGACAAATCAATTTCTTCAGCAGTCCAAAAGGACGCTTCAGCTTTTTTA 2087
Query 50364 TACATTTGATATATATCAAAATGTTCAATGGGAAATAGTACA 50405
|||| || |||||||| ||| | |||||| |||| |||
Sbjct 2086 TACAACTGCCATATATCATCATGCTTGATGGGATATAGGACA 2045
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 984327551426100
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |