Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414525.1_2020 15-10-27] 12,086 sequences; 74,456,230 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq4369 102 2e-16 >seq4369 Length=2652 Score = 102 bits (112), Expect = 2e-16 Identities = 370/582 (64%), Gaps = 10/582 (2%) Strand=Plus/Minus Query 49826 TGCAAAATCAGTATGTAAACCCTCGTCCCTAGATATAAATTCATTACTAAAAGTTAATCC 49885 |||||||||| ||||| || ||||| | ||| || ||||||||| ||||| || || Sbjct 2618 TGCAAAATCACAATGTACGCCTTCGTCACGAGAAATCAATTCATTAGAGAAAGTCAAACC 2559 Query 49886 TGGCATTAATCCTCTCTTTTTAAGCCAAAATATTGATGCAAAACTACTAGAAAAGAATAT 49945 ||||||||| || | ||||| | |||| | || || ||| || || |||||||| Sbjct 2558 TGGCATTAAACCACGTTTTTTCAACCAATAAATAGAACAGAAAGCACCTGAGAAGAATAT 2499 Query 49946 ACCCTCGACACACGCAAATGCTATTATTCTTGCTCCAAACATTAATTTATCATCTAATAT 50005 ||||| || | || || || | | |||| | || ||| || | ||| ||| Sbjct 2498 CCCCTCCACCGCCATGAAGGCAATGAGAC--GCTC--AGCA--AATGTACCCTCTTCTAT 2445 Query 50006 CCAATTTATAGCCCAATCTGCtttttttttGATAGAAGGTATATTTTCTATAGCTTTAAA 50065 ||| || | ||||| | |||||| || || | || ||| | |||| || || ||| Sbjct 2444 CCACTTCAGTGCCCATTTTGCTTTCTTCCCAATGGTGGGAATAGTATCTACAGATTGAAA 2385 Query 50066 TAATTCAtttttttCATNNNNNNNNNNNNNNNNNNNNNNNATTAATAAAGAATACATTTC 50125 ||| | ||||| || || | ||| || | || Sbjct 2384 TAACTTGGCCTTTTCTACCGCATCATTAATATATGTATCAATCAAGAGAGAGTAAGTCTC 2325 Query 50126 AGAATGTACAGCTTCCATAGCTATTTGAAATGAATAAAATTGTCTTGCTTCTGAATACTG 50185 || ||||| |||||| || |||||| ||| | | ||| || | ||| Sbjct 2324 AGCATGTATGTTTTCCATCATGATCTGAAATCCATAGAGACAACGTGCCTCCGGCACCTG 2265 Query 50186 AACTTCGG--AAAAGAATCGTTCAACTAAATTCTCAGATACAATACCATCAGATGCTGCG 50243 || || | || | || || ||| |||||| ||| || ||||| | || || Sbjct 2264 CACCTCTTTCATAAAATTCA--CAGCTAGGTTCTCATTTACTATCCCATCCGCAGCCGCA 2207 Query 50244 AAGAATGCTAAAACGTATTTAATAAAATGTTTTTCATTATCTTTTAAATTTTCCCAAGAT 50303 ||||| || |||| | ||| |||||| |||||| ||| |||| ||| |||| Sbjct 2206 AAGAACGCCAAAATATGCGAAATGAAATGTCTTTCATCATCATTTAGCCTTTTCCAATCC 2147 Query 50304 TCAAGATCGTTTGATAAATCTACTTCTTCTATTGTCCAAAATGATGCTACGGATTTTTTA 50363 ||| || | || ||||| | |||||| |||||||| || ||| | | ||||||| Sbjct 2146 GCAAAGTCATCGGACAAATCAATTTCTTCAGCAGTCCAAAAGGACGCTTCAGCTTTTTTA 2087 Query 50364 TACATTTGATATATATCAAAATGTTCAATGGGAAATAGTACA 50405 |||| || |||||||| ||| | |||||| |||| ||| Sbjct 2086 TACAACTGCCATATATCATCATGCTTGATGGGATATAGGACA 2045 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 984327551426100