Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414525.1_2020 15-10-27] 12,086 sequences; 74,456,230 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq7203 161 2e-34 seq4369 91.5 3e-13 >seq7203 Length=1522 Score = 161 bits (178), Expect = 2e-34 Identities = 367/545 (67%), Gaps = 24/545 (4%) Strand=Plus/Plus Query 38831 TTTTTGGTATTCAGAAACttttttttCGAAAAAGTTTGTTTTTCCTTCTAATGATATTAA 38890 ||||||||||||| || ||||||||| || || ||||| |||| ||| || || | Sbjct 673 TTTTTGGTATTCACCTACACGTTTTTCGAAGAAATTGGTTTTGCCTTGTAACGAAATCAT 732 Query 38891 ATTCATAAAATCAAATGGATTTTTGGTATTATAATATTTTT---CTCCTATCAATACATA 38947 || ||| ||||| || ||||| | | ||||||| ||| | ||||| ||| | Sbjct 733 ATCCATGAAATCGAAAGGATTGGTCGCATTATAAATTTTATTAACTCCT---AATGATTC 789 Query 38948 TAATAATCTATCGGCCACAAATTCAACATATTGTAACATTAATTCACAATTCATACCCAA 39007 || | |||||||||||| |||| ||||| |||||| ||| |||||| || | Sbjct 790 CAAAAGGTGATCGGCCACAAACTCAATGTATTGGCACATTAGTTCGGCATTCATGCCAAT 849 Query 39008 TAATTTAAATGGTAATGCATCATCAATAAATTCtttttctatttctacagcttgtttaat 39067 || || |||| |||||| | ||||||||||| |||||||| || | ||| | Sbjct 850 CAACGAAACAGGTAGCGCATCAGTTACGAATTCTTTTTCGATTTCTACTGCATCTTTCAC 909 Query 39068 tatcataattatattattttttga---taat--ttatatttaatatgattcgcatataGT 39122 || ||| || ||||| ||| | || || | | ||| | ||| | ||||| Sbjct 910 TA----AATCGTA-GATTTTCTGAGGGTCATACTTGTTCTGAATGTAATTAGTATATAAC 964 Query 39123 AAACATGCAAAATCCGTATGTAAACCTTCGTCCCTAGATATAAATTCATTACTAAAAGTT 39182 ||||| ||||| || ||||| ||||| || | ||| || || |||||| || || Sbjct 965 AAACAGGCAAAGTCACGGTGTAAGCCTTCATCACGAGAAATTAACTCATTAGAGAATGTA 1024 Query 39183 AATCCTGGCATTAATCCTCTCTTTTTAAGCCAAAATATTGATGCAAAACTA-CTAGAAAA 39241 | || |||||||| || | ||||| | ||| ||||| || ||| || | | || || Sbjct 1025 AGACCCGGCATTAAACCACGTTTTTTCAACCAGAATATCGA-GCAGAATGAGCCTGAGAA 1083 Query 39242 GAATATACCCTCCACACACGCAAATGCTATTATTCTTGCTCCAAACATTAATTTATCATC 39301 ||| ||||| || ||| |||||||||| | | | ||| || ||||| Sbjct 1084 GAAAATACCTTCTACAACGGCAAATGCTAACAGGCGGTCAATAAAGTTTCCGTTATC--- 1140 Query 39302 TAAAATCCAATTTATGGCCCAATCTGCtttttttttGATAGAAGGTATATTTTCTATAGC 39361 ||||||| | |||||||| |||||||| || | | | || |||| ||||| || Sbjct 1141 ---AATCCAACGCAAAGCCCAATCGGCTTTTTTCTTTACACACGGAATATGGTCTATGGC 1197 Query 39362 TTTAA 39366 |||| Sbjct 1198 ATTAA 1202 >seq4369 Length=2652 Score = 91.5 bits (100), Expect = 3e-13 Identities = 137/195 (70%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 39508 CAACTAAATTCTCAGATACAATACCATCAGATGCTGCGAAGAATGCTAAAACATATTTAA 39567 || ||| |||||| ||| || ||||| | || || ||||| || |||| || || Sbjct 2244 CAGCTAGGTTCTCATTTACTATCCCATCCGCAGCCGCAAAGAACGCCAAAATATGCGAAA 2185 Query 39568 TAAAATGTTTTTCATTATCTTTTAAATTTTCCCAAGATTCAAGATCGTTTGATAAATCTA 39627 | |||||| |||||| ||| |||| ||| |||| ||| || | || ||||| | Sbjct 2184 TGAAATGTCTTTCATCATCATTTAGCCTTTTCCAATCCGCAAAGTCATCGGACAAATCAA 2125 Query 39628 CTTCTTCTATTGTCCAAAAAGATGCTACGGATTTTTTATACATTTGATATATATCAAAAT 39687 |||||| |||||||| || ||| | | ||||||||||| || |||||||| || Sbjct 2124 TTTCTTCAGCAGTCCAAAAGGACGCTTCAGCTTTTTTATACAACTGCCATATATCATCAT 2065 Query 39688 GTTCAATGGGAAATA 39702 | | |||||| ||| Sbjct 2064 GCTTGATGGGATATA 2050 Score = 86.0 bits (94), Expect = 1e-11 Identities = 102/137 (74%), Gaps = 1/137 (1%) Strand=Plus/Minus Query 39120 aGTAAACATGCAAAATCCGTATGTAAACCTTCGTCCCTAGATATAAATTCATTACTAAAA 39179 ||| ||| ||||||||| ||||| |||||||| | ||| || ||||||||| ||| Sbjct 2625 AGTGAAC-TGCAAAATCACAATGTACGCCTTCGTCACGAGAAATCAATTCATTAGAGAAA 2567 Query 39180 GTTAATCCTGGCATTAATCCTCTCTTTTTAAGCCAAAATATTGATGCAAAACTACTAGAA 39239 || || ||||||||||| || | ||||| | |||| | || || ||| || || Sbjct 2566 GTCAAACCTGGCATTAAACCACGTTTTTTCAACCAATAAATAGAACAGAAAGCACCTGAG 2507 Query 39240 AAGAATATACCCTCCAC 39256 |||||||| |||||||| Sbjct 2506 AAGAATATCCCCTCCAC 2490 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 904999256578800