Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414525.1_2020 15-10-27] 12,086 sequences; 74,456,230 total letters Query= NC_021298.1 Length=51252 Score E Sequences producing significant alignments: (Bits) Value seq7644 257 5e-64 seq3530 125 2e-24 >seq7644 Length=1437 Score = 257 bits (284), Expect = 5e-64 Identities = 272/357 (76%), Gaps = 6/357 (2%) Strand=Plus/Minus Query 40502 GAAGTCGATGTCGACATCGGGCATGGACACGCGCTCGGGGTTCAGGAACCGCTCGAAGAT 40561 |||||||||||||| |||||||| || |||||||||||||||||||| ||||||||||| Sbjct 385 GAAGTCGATGTCGAAGTCGGGCATCGAGACGCGCTCGGGGTTCAGGAAGCGCTCGAAGAT 326 Query 40562 GAGTCCGTGCTCCAGCGGGTCGAGGTCGGTGATCCCGAGGACGTAGGCGACCAGCGAACC 40621 ||| ||||| ||||||||||||||||||||| | | |||| || ||| || || Sbjct 325 GAGGCCGTGGCGAAGCGGGTCGAGGTCGGTGATCTTCATGGCGTACGCCGCCATGGAGCC 266 Query 40622 GGCCGCAGAGCCTCGCCCAGGGCCGACCCAGACGCCGTTCTCCTTCGCCCAGCGGATGAA 40681 || | |||||||| || |||||||||| || |||||| |||||||||||| |||||| Sbjct 265 AGCGCCCGAGCCTCGGCCGGGGCCGACCCGGATGCCGTTGTCCTTCGCCCAGTTGATGAA 206 Query 40682 GTCCGCGACGACGAGGAAGTACGACGGGAAGCCCATCTGGATGATCATGTCGATCTCGTA 40741 ||| ||||||||||||||||| ||||| |||||||| | ||| || || ||||||| Sbjct 205 GTCGGCGACGACGAGGAAGTAGCCGGGGAACCCCATCTGCAGGATGATCCCGGTCTCGTA 146 Query 40742 CTGGAGCTGCTTGCCGTGCTCGTAGTCCG---TGCCGTTCGGGTACCGACGACGCGCGCC 40798 || | |||||||| || | | ||| | ||||| ||||||| || || | ||| Sbjct 145 CTCGGCCTGCTTGC---GCACCTTGTCGGGGATGCCGCTCGGGTAGCGGTGATGGAGGCC 89 Query 40799 TCGGGCGACCTCGTCCTCGAACCAGGTGATCTCCGTGTGCCCCTCGGGCACCGGGAA 40855 ||||||| | || |||| || ||||| | || |||||||| ||||| Sbjct 88 GGCCTCGACCTCCTTGATGAGCCAGCTGTCTTCCGTCTCGCCGTCGGGCACGGGGAA 32 Score = 96.9 bits (106), Expect = 1e-15 Identities = 109/146 (75%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 39512 CGCTCCCTTCTGGAAGTTCACGAACTCCTTGGCCAGAACCTCGGGCTTCTTCTTGCCCAT 39571 ||| ||||| ||||| || || | || ||||| |||||| ||||||||||||||| Sbjct 1378 CGCGCCCTTGCGGAAGATCTCGCGGTGCTCGGCCATCTCCTCGGCCTTCTTCTTGCCCAT 1319 Query 39572 CGCCCGGCGAAGCAGGTCGGCCTGACCGAGGGTGTACCCGGCCATGACCTGCGCAACCTT 39631 || ||||| ||||||||||| || ||| |||| || ||| |||||||| || Sbjct 1318 GGCGCGGCGCAGCAGGTCGGCTCCGCCCAGGCTGTAGCCACCCAGCACCTGCGCGGTCTG 1259 Query 39632 CTGCACCTGCTCCTGGTAGATGATGA 39657 | |||||| |||||||||| |||| Sbjct 1258 CATCACCTGTTCCTGGTAGACCATGA 1233 >seq3530 Length=3544 Score = 125 bits (138), Expect = 2e-24 Identities = 167/232 (72%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 40502 GAAGTCGATGTCGACATCGGGCATGGACACGCGCTCGGGGTTCAGGAACCGCTCGAAGAT 40561 |||||| || |||| ||||||||||| || ||||| ||||| ||||| ||||| || | Sbjct 898 GAAGTCAATATCGAAGTCGGGCATGGATACCCGCTCAGGGTTAAGGAAACGCTCAAACAG 839 Query 40562 GAGTCCGTGCTCCAGCGGGTCGAGGTCGGTGATCCCGAGGACGTAGGCGACCAGCGAACC 40621 || || | || ||||| ||||| || || || ||| ||| || ||||| ||||| Sbjct 838 CAGATTGTATTTGAGTGGGTCCAGGTCAGTAATGCCCAGGCTGTAAGCCACCAGTGAACC 779 Query 40622 GGCCGCAGAGCCTCGCCCAGGGCCGACCCAGACGCCGTTCTCCTTCGCCCAGCGGATGAA 40681 || | ||||| | || ||||| ||| ||||| || | || |||||| ||| || Sbjct 778 AGCACCGGAGCCCCTGCCCGGGCCTACCGGCACGCCATTATTTTTAGCCCAGTTGATAAA 719 Query 40682 GTCCGCGACGACGAGGAAGTACGACGGGAAGCCCATCTGGATGATCATGTCG 40733 || || |||| ||||| || ||||| ||||||||||| || ||| || Sbjct 718 ATCAGCTACGATCAGGAAATAGCCTGGGAACCCCATCTGGATAATGATGCCG 667 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 163861279048648