Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414525.1_2020 15-10-27] 12,086 sequences; 74,456,230 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq4369 116 1e-20 seq8805 114 4e-20 seq477 114 4e-20 seq6184 107 6e-18 seq3759 105 2e-17 seq91 89.7 2e-12 >seq4369 Length=2652 Score = 116 bits (128), Expect = 1e-20 Identities = 374/572 (65%), Gaps = 20/572 (3%) Strand=Plus/Plus Query 133071 ATAGGTTTGTTATGTTCCCAATTAAGGACGACGAGATTTGGCAGATGTATAAAAAACAGC 133130 || ||||||| | | || || ||| | || || || |||||| ||||||||||| Sbjct 2038 ATCGGTTTGTCCTATATCCCATCAAGCATGATGATATATGGCAGTTGTATAAAAAAGCTG 2097 Query 133131 AAGATTTATTTTGGACTTCAACTGAAGTAGATTTATCCAAAGACCCAGCCCACTGGGAAG 133190 ||| | ||||||||| | ||| | ||||| ||| | ||| || | ||| || Sbjct 2098 AAGCGTCCTTTTGGACTGCTGAAGAAATTGATTTGTCCGATGACTTTGCGGATTGGAAAA 2157 Query 133191 CCCTTACTGGGGATGAAAAACATTTTATTTCTATGATTTTAGCGTTTTTTGCTGCGAGTG 133250 || | || ||||||| |||||| ||||| ||||| ||||| ||||| || | Sbjct 2158 GGCTAAATGATGATGAAAGACATTTCATTTCGCATATTTTGGCGTTCTTTGCGGCTGCGG 2217 Query 133251 ATGGTATTGTTCTTGAAAATTTAG----GAACACGGTTTATGGGAGAAGTTCAACTGGCC 133306 |||| || || ||| || ||| ||| |||||| ||| || || || | Sbjct 2218 ATGGGATAGTAAATGAGAACCTAGCTGTGAA----TTTTATGAAAGAGGTGCAGGTGCCG 2273 Query 133307 GAAGCCCGTGCCTTTTATGGGCTACAGATTGCGATGGAAAATATCCATTCTATCACATAT 133366 || || ||| | ||||| | ||||| ||||||||| || ||| || || || Sbjct 2274 GAGGCACGTTGTCTCTATGGATTTCAGATCATGATGGAAAACATACATGCTGAGACTTAC 2333 Query 133367 TCTACTC-TAATTGATACTTACATCAAAGATACCGTCCAGAAGCACAAACTA-TTCAACG 133424 ||| ||| | |||||||| || || || ||| | || | ||| ||| || ||||| Sbjct 2334 TCT-CTCTTGATTGATACATATATTAATGATGCGGTAGAAAAGGCCAAGTTATTTCAA-- 2390 Query 133425 CCATTAGCGAAT-TTCCTTGTATTAAAAAGAAATCTGACTGGGCTATTAAATGGATCCAG 133483 | ||| | | |||| ||| |||||| | | ||||| | || ||||| Sbjct 2391 TCTGTAGATACTATTCCCACCATTGGGAAGAAAGCAAAATGGGCACTGAAGTGGAT---- 2446 Query 133484 GACAAGCGTGCGAGTTTTGCTACTCGTCTCGTTGCTTTTGCTGTAGTAGAGGGCAttttt 133543 | ||| | | | |||||| |||||| |||| || | || ||||| || || Sbjct 2447 -AGAAGAG-GGTACATTTGCTGAGCGTCTCATTGCCTTCATGGCGGTGGAGGGGATATTC 2504 Query 133544 ttCAGTGGTGCGTTCTGCTCTATTTTTTGGCTTAAAAAGCGTGGTATTCTACCTGGACTG 133603 ||| ||||| ||||| ||||||| |||| | ||||| |||||| | | || || || Sbjct 2505 TTCTCAGGTGCTTTCTGTTCTATTTATTGGTTGAAAAAACGTGGTTTAATGCCAGGTTTG 2564 Query 133604 TGTTTTTCTAACGAACTTATTTCAAGGGACGA 133635 ||| ||||| ||| | ||||| | ||||| Sbjct 2565 ACTTTCTCTAATGAATTGATTTCTCGTGACGA 2596 >seq8805 Length=1264 Score = 114 bits (126), Expect = 4e-20 Identities = 222/326 (68%), Gaps = 4/326 (1%) Strand=Plus/Minus Query 289029 ACCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTCGCAATTGC 289088 |||||| || ||||||||||| || || |||| ||| |||| || || | | || | Sbjct 761 ACCAACGGCGTCAATTTCGTCGATAAAGATCAAACAGGGAGCATGTTTTTTGGCCTGGTC 702 Query 289089 AAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCAGAA-- 289146 ||| || || | || || || || || | ||| ||| ||||||| |||||||||||| Sbjct 701 AAACAAGTCACGGACTCGAGAAGCACCCACACCCACAAACATTTCAACAAATTCAGAACC 642 Query 289147 GCGGATACTTGAATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGTGTC 289206 | ||| || || ||| | ||| || || || || ||||| | || | | || Sbjct 641 ACTGATGCT--AAAGAAAGGCACAGAAGCCTCACCAGCAACTGCTTTAGCAATCAAGGTT 584 Query 289207 TTACCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTTGGTACTTTTGCCCCAGCAGAC 289266 |||||||| ||||| || || | | | || || || || | || || ||| | | Sbjct 583 TTACCTGTACCAGGCGGGCCTACAAGCAAGACGCCTTTAGGAATCTTGGCGCCAAGGGCC 524 Query 289267 TTATATTTCTCAGGGCTCTTTAAAAATTCTACAATTTCCTCAAGTTCATATTTTGCCTCA 289326 | |||||| ||||| |||| || || |||||||| || ||||| | ||| || ||| Sbjct 523 TGATATTTATCAGGAGATTTTAGGAAGTCGACAATTTCTTCGAGTTCCTGTTTAGCTTCA 464 Query 289327 TCACATCCTGCTACATCAGCAAAAGT 289352 ||| || || ||||| |||| || Sbjct 463 TCAGCACCAGCAACATCGTCAAAGGT 438 >seq477 Length=28846 Score = 114 bits (126), Expect = 4e-20 Identities = 180/258 (70%), Gaps = 0/258 (0%) Strand=Plus/Plus Query 251403 GGCGATAAGACCACACTTATTACACACATGGACGCTGTAAGCATCAGATGCGTCATATAG 251462 ||| |||| ||||| ||| ||||| || || | || ||||| || || | || Sbjct 4711 GGCAATAATCCCACAAATATCGCACACGTGCACACGATAGGCATCCGAGTTTGCAAAGAG 4770 Query 251463 CCGACCCTTGGTGAAGCGAGATGCACCGTGTGAAATCATACAATCACGCTCCATTTCACC 251522 |||| || || ||| | | |||||||| |||| ||| || ||||||||||| || Sbjct 4771 CCGATCCATGAGGAAATTGGCCGAGCCGTGTGAGATCAAACAGTCGCGCTCCATTTCTCC 4830 Query 251523 GAAACGAAGACCACCATCGCGAGCCCTACCCTCGGCAGGCTGACGAGTGAGATTAACCAT 251582 | || |||||||| |||||||| | |||||| |||||||| || || || || Sbjct 4831 CATGCGTAGACCACCCTCGCGAGCACGACCCTCCATTGGCTGACGCGTCAGCATAGTCAC 4890 Query 251583 AGGACCGATGGAGCGGCTATGTTGCTTATCATTTACCATATGCTTGAGACGCTGGTAGAA 251642 ||||| ||||| || ||| || | ||||||||||| | ||||||||||| Sbjct 4891 CGGACCACGCGAGCGCGAGTGAATCTTGTCGTCAACCATATGCTTCAATCGCTGGTAGAA 4950 Query 251643 TGCGGGACCGATGAAGAT 251660 | |||||||||||||| Sbjct 4951 GGTTGGACCGATGAAGAT 4968 >seq6184 Length=1767 Score = 107 bits (118), Expect = 6e-18 Identities = 250/371 (67%), Gaps = 12/371 (3%) Strand=Plus/Minus Query 288877 GCTGGGTCTAATATATCGGCTCTGTTTGTTGCTGCCAATACAACAATAGATTCGGTTTGC 288936 || ||||| | || ||| | ||| ||||| | |||| ||| | || | || | | Sbjct 362 GCAGGGTCAAGTACATCAGGTCTATTTGTGGAAGCCATTACGATAAC-GTTTGTATCCAC 304 Query 288937 TT-AAATCCATCCATACTTGTTAAAATTTGATTAAGTGTTTGTTCCCTTTCATCATTTGA 288995 || |||||||||||| ||| | || ||||| || |||||||| | ||||||| | Sbjct 303 TTCAAATCCATCCATTTCTGTAAGGATCTGATTGAGAGTTTGTTCGCGCTCATCATGTCC 244 Query 288996 ACCTCTTGAATCACCCGAATCGCTCCtttttttACCAACAGCATCAATTTCGTCAATGAA 289055 || | | | || | | | | | | ||| |||||||| ||||| || || || Sbjct 243 TCCACCTA---CTCCAGCACCACGC---TGACGACCTACAGCATCTATTTCATCTATAAA 190 Query 289056 AATCACACACGGAGAATTTTGTCTCGCAATTGCAAATAATTCTCTTACACGGGATGCTCC 289115 || | | | || | | | | | || || ||| | |||||||| || ||||| || Sbjct 189 GATAATAGAAGGCGCAGTACGCTTTGCTTTTTTAAAGAGGTCTCTTACTCGAGATGCACC 130 Query 289116 AAGACCAACATACATTTCTACAAATTCAGAAGCGGA--TACTTGAATGAATGTTACATTT 289173 | ||| ||| |||| || ||||| |||||| | || || | || || | |||| Sbjct 129 TACACCTACAAACATCTCCACAAACTCAGAACCAGAGATAGTGTAA--AAAGGAACATCA 72 Query 289174 GCTTCGCCTGCTACTGCCCTCGCCAGAAGTGTCTTACCTGTTCCAGGTGGTCCCTCTAAT 289233 ||||| ||||||||||| | || |||||||||||||| ||||| || || || | || Sbjct 71 GCTTCTCCTGCTACTGCACGGGCTAGAAGTGTCTTACCAGTTCCTGGAGGACCATACAAA 12 Query 289234 AGAACTCCCTT 289244 || |||||||| Sbjct 11 AGTACTCCCTT 1 >seq3759 Length=3256 Score = 105 bits (116), Expect = 2e-17 Identities = 342/516 (66%), Gaps = 24/516 (5%) Strand=Plus/Minus Query 155678 ATTCTTCTGGTTAGATTTACTGTTACAAGCATCCTTGTATAGAATGTATGGGGTTCCTGT 155737 ||| ||||| ||| ||| | || |||||||| || || || || || || || Sbjct 1704 ATTTTTCTGATTACTTTTTTTATTCACTGCATCCTTATACCCGATATACGGAGTACCCGT 1645 Query 155738 CTCCATCTGTGCGTCCAGAATCTTTAGCCAGAGGTCACGGGCATTAATTTGCTTGTTGTA 155797 ||| |||||||| || || | ||| | ||| |||||||| || || || || | | | Sbjct 1644 CTCGATCTGTGCCTCAAGTACCTTCATCCACAGGTCACGAGCTTTGATCA-CTCGATCTG 1586 Query 155798 -TCTGCCTTCCGACTCATATT--TCATATACAGCGTTCGGTAATCCTCACCGTA-ACAAT 155853 | | ||||| |||||| ||||||| | || | |||| || || || ||| | Sbjct 1585 CTTTCCCTTCACGCTCATACCGCTCATATAAATTTTT--GAAATCGTCTCCATACACATT 1528 Query 155854 CACTCAGTCCAGGG-CACTTATCGGGGCAAAACAGCGACCAAATTTTATTACCGATTACA 155912 | ||||| ||| || || |||| |||| ||| ||||| || | |||| Sbjct 1527 TGCA-AGTCCTGGGGCATTTGCCGGGTCAAA-CAGACACCAATCGGCATCGGCCTTTACC 1470 Query 155913 CGCTCCATAAATACATCACTCGCCCAAATAGCATAGAAAAGGTCCCTTGC---CTTTGAC 155969 ||||||||||| ||| | |||||| | || || | || || || | || Sbjct 1469 TTCTCCATAAATAGATCTGGCACCCAAAGTCCGTAAAACAAATCTCTCGCTCGCATT--- 1413 Query 155970 TCCTCATCGCCGTGATTCTTCCGTAGCTCTAAGAATTCCTCAATATCAGGATGGTGTGGC 156029 || || | || ||||| || || || || | || || ||||| | ||| ||| Sbjct 1412 TCTTCTTTTCCATGATTTTTACGAAGATCCAGAAACTCAAAGATATCTGCATGCCAAGGC 1353 Query 156030 TCCAGATACATAGCAAA-ACTACCATTCCTCTTGCCACCCTGATCTACATACCGAGCAGT 156088 |||||||| |||||||| ||| || ||| | || || ||||||||||||| | ||||| Sbjct 1352 TCCAGATATATAGCAAATACTCCCTTTCTTTTT-CCTGCCTGATCTACATATCTCGCAGT 1294 Query 156089 CTTATTGAAGACACCTAGCATAGGAATAATACCATTGGAAGTG---CCATTGGTTCCGCG 156145 | ||||| |||| |||||||| | |||||| |||| | || ||| |||| Sbjct 1293 TTCGTTGAACACACGAAGCATAGGCACGATACCA---GAAGAGACACCGTTGTTTCCTTT 1237 Query 156146 AATATGCGAACCAGATGAGCGAACATTATGAATATG 156181 |||| |||||| || |||| || ||||||||| Sbjct 1236 GATATACGAACCGCGTGCACGAATATCATGAATATG 1201 >seq91 Length=60761 Score = 89.7 bits (98), Expect = 2e-12 Identities = 99/132 (75%), Gaps = 0/132 (0%) Strand=Plus/Plus Query 354003 CTTAATTGCTGTGGCGAGAGCACCAAGCGAGTCACGGTCGAGGAAATTAGTAGGTTCGTC 354062 |||||| || | || ||||||||||||||||| ||||| ||| | || || || || || Sbjct 11117 CTTAATAGCCGAAGCCAGAGCACCAAGCGAGTCGCGGTCAAGGTAGTTCGTCGGCTCATC 11176 Query 354063 AAGGATAAGAACGTGCGGCTCCATCCACATTGCTGCAGCCAGAACTACCTTAACCTTCTG 354122 || | | || |||||| | || |||||| || || || || || ||||| |||||||| Sbjct 11177 GAGCACCAAAATGTGCGGGTTCAGCCACATCGCAGCGGCGAGCACGACCTTCACCTTCTG 11236 Query 354123 TCCGCCTGATAG 354134 || || || || Sbjct 11237 ACCACCCGACAG 11248 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471589686284982