Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414525.1_2020
15-10-27] 12,086 sequences; 74,456,230 total letters
Query= NC_021339.1
Length=51077
Score E
Sequences producing significant alignments: (Bits) Value
seq7644 257 5e-64
seq3530 131 5e-26
>seq7644
Length=1437
Score = 257 bits (284), Expect = 5e-64
Identities = 272/357 (76%), Gaps = 6/357 (2%)
Strand=Plus/Minus
Query 40250 GAAGTCGATGTCGACATCGGGCATGGACACGCGCTCGGGGTTCAGGAAGCGCTCGAAGAT 40309
|||||||||||||| |||||||| || ||||||||||||||||||||||||||||||||
Sbjct 385 GAAGTCGATGTCGAAGTCGGGCATCGAGACGCGCTCGGGGTTCAGGAAGCGCTCGAAGAT 326
Query 40310 GAGCCCGTGCTCCAGCGGGTCGAGGTCGGTGATCCCGAGGACGTAGGCGACCAGCGAACC 40369
||| ||||| ||||||||||||||||||||| | | |||| || ||| || ||
Sbjct 325 GAGGCCGTGGCGAAGCGGGTCGAGGTCGGTGATCTTCATGGCGTACGCCGCCATGGAGCC 266
Query 40370 GGCCGCAGAGCCCCGCCCAGGGCCGACCCAGACCCCGTTCTCCTTCGCCCAGCGGATGAA 40429
|| | ||||| || || |||||||||| || ||||| |||||||||||| ||||||
Sbjct 265 AGCGCCCGAGCCTCGGCCGGGGCCGACCCGGATGCCGTTGTCCTTCGCCCAGTTGATGAA 206
Query 40430 GTCCGCGACGACGAGGAAGTACGACGGGAACCCCATCTGGATGATCATGTCGATCTCGTA 40489
||| ||||||||||||||||| |||||||||||||| | ||| || || |||||||
Sbjct 205 GTCGGCGACGACGAGGAAGTAGCCGGGGAACCCCATCTGCAGGATGATCCCGGTCTCGTA 146
Query 40490 CTGGAGCTGCTTGCCGTGCTCGTAGTCCG---TGCCGTTCGGGTACCGACGACGGGCACC 40546
|| | |||||||| || | | ||| | ||||| ||||||| || || || ||
Sbjct 145 CTCGGCCTGCTTGC---GCACCTTGTCGGGGATGCCGCTCGGGTAGCGGTGATGGAGGCC 89
Query 40547 TCGATGGACCTCGTCCTCGAACCAGGTGATCTCCGTGTGCCCCTCGGGCACCGGGAA 40603
| |||||| | || |||| || ||||| | || |||||||| |||||
Sbjct 88 GGCCTCGACCTCCTTGATGAGCCAGCTGTCTTCCGTCTCGCCGTCGGGCACGGGGAA 32
Score = 96.9 bits (106), Expect = 1e-15
Identities = 196/289 (68%), Gaps = 24/289 (8%)
Strand=Plus/Minus
Query 39260 CGCTCCCTTCTGGAAGTTCACGAACTCCTTGGCCAGAACCTCGGGCTTCTTCTTGCCCAT 39319
||| ||||| ||||| || || | || ||||| |||||| |||||||||||||||
Sbjct 1378 CGCGCCCTTGCGGAAGATCTCGCGGTGCTCGGCCATCTCCTCGGCCTTCTTCTTGCCCAT 1319
Query 39320 CGCCCGGCGAAGCAGGTCGGCCTGACCCAGGGTGTACCCGGCCATGACCTGTGCAACCTT 39379
|| ||||| ||||||||||| |||||| |||| || ||| ||||| || ||
Sbjct 1318 GGCGCGGCGCAGCAGGTCGGCTCCGCCCAGGCTGTAGCCACCCAGCACCTGCGCGGTCTG 1259
Query 39380 CTGCACCTGCTCCTGGTAGATGATCAACTGGAATGTCGGGTCCAGGATCTCCGACAGGGA 39439
| |||||| |||||||||| || ||| || ||| |||| |||||
Sbjct 1258 CATCACCTGTTCCTGGTAGACCAT-------GATGCCG----TAGG-TCTCTGACAGCAT 1211
Query 39440 CTCGGCCACCTCGGGGTGGATCGG---CGTGATCGCCTGCTGCCCGTTCTTCCGGAGGGC 39496
|||||||||| | ||||| ||| | ||| | || || |||| ||| ||| |
Sbjct 1210 CTCGGCCACCGCCGGGTG---CGGGTACTCGATGGTCTCCTTGCCGTGCTTGCGGTTCAC 1154
Query 39497 GTAGTTCGTGTGAGACCCCACGCCCATCGGACCCGGACGGTACAGCGCG 39545
| || | | | || | ||||||| ||||| ||||||||||||
Sbjct 1153 GAAGCTGGGG------ATCAGGTCCATCGGGCCCGGCCGGTACAGCGCG 1111
>seq3530
Length=3544
Score = 131 bits (144), Expect = 5e-26
Identities = 193/272 (71%), Gaps = 6/272 (2%)
Strand=Plus/Minus
Query 40213 TGACGTACTGGATGACCTCGCCACGACGCCGGTCATCG---AAGTCGATGTCGACATCGG 40269
||||||| | |||||| || | ||||| || | | ||||| || |||| ||||
Sbjct 935 TGACGTAATCGATGAC---GCGATCACGCCCTTCCTGGCAGAAGTCAATATCGAAGTCGG 879
Query 40270 GCATGGACACGCGCTCGGGGTTCAGGAAGCGCTCGAAGATGAGCCCGTGCTCCAGCGGGT 40329
||||||| || ||||| ||||| ||||| ||||| || | || || | || ||||
Sbjct 878 GCATGGATACCCGCTCAGGGTTAAGGAAACGCTCAAACAGCAGATTGTATTTGAGTGGGT 819
Query 40330 CGAGGTCGGTGATCCCGAGGACGTAGGCGACCAGCGAACCGGCCGCAGAGCCCCGCCCAG 40389
| ||||| || || || ||| ||| || ||||| ||||| || | ||||||| || |
Sbjct 818 CCAGGTCAGTAATGCCCAGGCTGTAAGCCACCAGTGAACCAGCACCGGAGCCCCTGCCCG 759
Query 40390 GGCCGACCCAGACCCCGTTCTCCTTCGCCCAGCGGATGAAGTCCGCGACGACGAGGAAGT 40449
|||| ||| || || || | || |||||| ||| || || || |||| ||||| |
Sbjct 758 GGCCTACCGGCACGCCATTATTTTTAGCCCAGTTGATAAAATCAGCTACGATCAGGAAAT 699
Query 40450 ACGACGGGAACCCCATCTGGATGATCATGTCG 40481
| ||||||||||||||||| || ||| ||
Sbjct 698 AGCCTGGGAACCCCATCTGGATAATGATGCCG 667
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 163301359420548
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |