Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414525.1_2020 15-10-27] 12,086 sequences; 74,456,230 total letters Query= NC_021339.1 Length=51077 Score E Sequences producing significant alignments: (Bits) Value seq7644 257 5e-64 seq3530 131 5e-26 >seq7644 Length=1437 Score = 257 bits (284), Expect = 5e-64 Identities = 272/357 (76%), Gaps = 6/357 (2%) Strand=Plus/Minus Query 40250 GAAGTCGATGTCGACATCGGGCATGGACACGCGCTCGGGGTTCAGGAAGCGCTCGAAGAT 40309 |||||||||||||| |||||||| || |||||||||||||||||||||||||||||||| Sbjct 385 GAAGTCGATGTCGAAGTCGGGCATCGAGACGCGCTCGGGGTTCAGGAAGCGCTCGAAGAT 326 Query 40310 GAGCCCGTGCTCCAGCGGGTCGAGGTCGGTGATCCCGAGGACGTAGGCGACCAGCGAACC 40369 ||| ||||| ||||||||||||||||||||| | | |||| || ||| || || Sbjct 325 GAGGCCGTGGCGAAGCGGGTCGAGGTCGGTGATCTTCATGGCGTACGCCGCCATGGAGCC 266 Query 40370 GGCCGCAGAGCCCCGCCCAGGGCCGACCCAGACCCCGTTCTCCTTCGCCCAGCGGATGAA 40429 || | ||||| || || |||||||||| || ||||| |||||||||||| |||||| Sbjct 265 AGCGCCCGAGCCTCGGCCGGGGCCGACCCGGATGCCGTTGTCCTTCGCCCAGTTGATGAA 206 Query 40430 GTCCGCGACGACGAGGAAGTACGACGGGAACCCCATCTGGATGATCATGTCGATCTCGTA 40489 ||| ||||||||||||||||| |||||||||||||| | ||| || || ||||||| Sbjct 205 GTCGGCGACGACGAGGAAGTAGCCGGGGAACCCCATCTGCAGGATGATCCCGGTCTCGTA 146 Query 40490 CTGGAGCTGCTTGCCGTGCTCGTAGTCCG---TGCCGTTCGGGTACCGACGACGGGCACC 40546 || | |||||||| || | | ||| | ||||| ||||||| || || || || Sbjct 145 CTCGGCCTGCTTGC---GCACCTTGTCGGGGATGCCGCTCGGGTAGCGGTGATGGAGGCC 89 Query 40547 TCGATGGACCTCGTCCTCGAACCAGGTGATCTCCGTGTGCCCCTCGGGCACCGGGAA 40603 | |||||| | || |||| || ||||| | || |||||||| ||||| Sbjct 88 GGCCTCGACCTCCTTGATGAGCCAGCTGTCTTCCGTCTCGCCGTCGGGCACGGGGAA 32 Score = 96.9 bits (106), Expect = 1e-15 Identities = 196/289 (68%), Gaps = 24/289 (8%) Strand=Plus/Minus Query 39260 CGCTCCCTTCTGGAAGTTCACGAACTCCTTGGCCAGAACCTCGGGCTTCTTCTTGCCCAT 39319 ||| ||||| ||||| || || | || ||||| |||||| ||||||||||||||| Sbjct 1378 CGCGCCCTTGCGGAAGATCTCGCGGTGCTCGGCCATCTCCTCGGCCTTCTTCTTGCCCAT 1319 Query 39320 CGCCCGGCGAAGCAGGTCGGCCTGACCCAGGGTGTACCCGGCCATGACCTGTGCAACCTT 39379 || ||||| ||||||||||| |||||| |||| || ||| ||||| || || Sbjct 1318 GGCGCGGCGCAGCAGGTCGGCTCCGCCCAGGCTGTAGCCACCCAGCACCTGCGCGGTCTG 1259 Query 39380 CTGCACCTGCTCCTGGTAGATGATCAACTGGAATGTCGGGTCCAGGATCTCCGACAGGGA 39439 | |||||| |||||||||| || ||| || ||| |||| ||||| Sbjct 1258 CATCACCTGTTCCTGGTAGACCAT-------GATGCCG----TAGG-TCTCTGACAGCAT 1211 Query 39440 CTCGGCCACCTCGGGGTGGATCGG---CGTGATCGCCTGCTGCCCGTTCTTCCGGAGGGC 39496 |||||||||| | ||||| ||| | ||| | || || |||| ||| ||| | Sbjct 1210 CTCGGCCACCGCCGGGTG---CGGGTACTCGATGGTCTCCTTGCCGTGCTTGCGGTTCAC 1154 Query 39497 GTAGTTCGTGTGAGACCCCACGCCCATCGGACCCGGACGGTACAGCGCG 39545 | || | | | || | ||||||| ||||| |||||||||||| Sbjct 1153 GAAGCTGGGG------ATCAGGTCCATCGGGCCCGGCCGGTACAGCGCG 1111 >seq3530 Length=3544 Score = 131 bits (144), Expect = 5e-26 Identities = 193/272 (71%), Gaps = 6/272 (2%) Strand=Plus/Minus Query 40213 TGACGTACTGGATGACCTCGCCACGACGCCGGTCATCG---AAGTCGATGTCGACATCGG 40269 ||||||| | |||||| || | ||||| || | | ||||| || |||| |||| Sbjct 935 TGACGTAATCGATGAC---GCGATCACGCCCTTCCTGGCAGAAGTCAATATCGAAGTCGG 879 Query 40270 GCATGGACACGCGCTCGGGGTTCAGGAAGCGCTCGAAGATGAGCCCGTGCTCCAGCGGGT 40329 ||||||| || ||||| ||||| ||||| ||||| || | || || | || |||| Sbjct 878 GCATGGATACCCGCTCAGGGTTAAGGAAACGCTCAAACAGCAGATTGTATTTGAGTGGGT 819 Query 40330 CGAGGTCGGTGATCCCGAGGACGTAGGCGACCAGCGAACCGGCCGCAGAGCCCCGCCCAG 40389 | ||||| || || || ||| ||| || ||||| ||||| || | ||||||| || | Sbjct 818 CCAGGTCAGTAATGCCCAGGCTGTAAGCCACCAGTGAACCAGCACCGGAGCCCCTGCCCG 759 Query 40390 GGCCGACCCAGACCCCGTTCTCCTTCGCCCAGCGGATGAAGTCCGCGACGACGAGGAAGT 40449 |||| ||| || || || | || |||||| ||| || || || |||| ||||| | Sbjct 758 GGCCTACCGGCACGCCATTATTTTTAGCCCAGTTGATAAAATCAGCTACGATCAGGAAAT 699 Query 40450 ACGACGGGAACCCCATCTGGATGATCATGTCG 40481 | ||||||||||||||||| || ||| || Sbjct 698 AGCCTGGGAACCCCATCTGGATAATGATGCCG 667 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 163301359420548