Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414525.1_2020
15-10-27] 12,086 sequences; 74,456,230 total letters
Query= NC_021343.1
Length=35430
Score E
Sequences producing significant alignments: (Bits) Value
seq6992 248 2e-61
seq6336 100 6e-17
seq6999 80.6 6e-11
>seq6992
Length=1569
Score = 248 bits (274), Expect = 2e-61
Identities = 722/1088 (66%), Gaps = 63/1088 (6%)
Strand=Plus/Minus
Query 26129 TGCGGTCGGCCTGCGCGCGAAGATCGATCAACAAACCGG-CTGGCATAAGACGCTCTCGA 26187
|||| |||||||||| || |||||||| || | ||| || |||||| |||| || || |
Sbjct 1522 TGCGCTCGGCCTGCGTGCCAAGATCGA-CACCGAACAGGGCTGGCACAAGAGCCTGTCCA 1464
Query 26188 ACGTCGCTGTGAATGGCGTCGAAGGGATCAGCAAGCCGGTTTCGTGGGATTTGCAGAACC 26247
|||| | ||| ||||||| || ||| |||| || |||||| ||||| | |
Sbjct 1463 ACGTGCCCGTGGCTGGCGTCACCGGCATCTCCAAGGATGTGCATTGGGATCTGCAGGATC 1404
Query 26248 CGGCGACCGATGCGGGTTTCCTCAACGAGAATCAGGTCACGACGCTGATCAACCGGAACG 26307
|||| |||||||| || ||||||||||| | |||| |||||| | | ||||
Sbjct 1403 CGGCCACCGATGCCGGCATCCTCAACGAGGGCGACATCACCACGCTGGTGACGTTCAACG 1344
Query 26308 GCTTCCGATTCTGGGGCTCGCGCACG-GCGTCCGACGATCCGCTGTTCGCGTTCGAAAAC 26366
|| || |||||||| ||||||||| ||| | || || ||||||| ||||| |
Sbjct 1343 GCCAGCGCTTCTGGGGATCGCGCACGTGCG-CGGAGGACAACATGTTCGCCTTCGAGACG 1285
Query 26367 TACACGCGCACGGCGCAGGTGCTGGCCGATACGATGGCCGAAGCACAGATGGTCGTTATC 26426
||||||||| |||||| | |||||||| || || ||||||| | | || ||
Sbjct 1284 GCCACGCGCACCGCGCAGATCCTGGCCGACACCATCGCCGAAGGCGTGGCGTTCTACGTC 1225
Query 26427 GACGGCGCGATGATTCCGGCGCTACCGCGCGACGTGATCGAGGGCATCAACGCAAAAATG 26486
||| ||||| || |||| | || ||||||| |||||||| || |
Sbjct 1224 GACAAACCGATGCACCCCTCGCTGGTCAGGGATCTGATCGAAACGATCAACGCCAAGTTC 1165
Query 26487 CGTGAAATGAAAACCAAGGGCCAGTTGATCGGCGGCTCGGCGTGGTTCGACGCGGAACAG 26546
|| || |||| | |||| | ||||||| | | || |||| ||| ||| | |
Sbjct 1164 CGCGACCTGAAGTCGTCGGGCTACTTGATCGATGCCAACGCCTGGTACGA--CGGCATGG 1107
Query 26547 --AACGGCGTTGTGGCGCTGAAAGATGGCAAAGCGGTG---ATCAATTACGACTACACGC 26601
||| ||| |||| |||||| ||| || ||| |||||||||||||||
Sbjct 1106 TCAACAGCGCCACCACGCTCGCCGATGGC---GCGCTGCGCATCGATTACGACTACACGC 1050
Query 26602 CGGTGCCCCCGCTGGAAAACCTCACGCTGCGCCAGAAGATCACCGACCAG-TATCTGGCC 26660
||||||| |||||||| ||| | |||| | ||||||||||| ||||| || ||||||
Sbjct 1049 CGGTGCCACCGCTGGAGAACTTGCAGCTGTACAAGAAGATCACC-ACCAGCTACCTGGCC 991
Query 26661 GATTTCGCGTCGCAGGTCAACGCGTAACGCACCCGCCTGGACAAGTCGTCCGGGCCAGAC 26720
|| ||||| | ||||||||||||||||||||||| || | ||| ||
Sbjct 990 GACTTCGCCGAACGCGTCAACGCGTAACGCACCCGCCT---CAGAT--TCCCGG------ 942
Query 26721 ATAGGGAAGGGAGGATAGAA--AAATGGGAATGCCGTCCAAACT-GAAGCACTTCAACGT 26777
|||| |||| |||| ||||| |||| | ||||| |
Sbjct 941 ----------------AGAACCCCATGGCTTTGCCCAAGAAACTCAAAGCGC-TCAACCT 899
Query 26778 GTTTCTCAACGGCGTGTCGTATATCGGGCAGACGGCGGAACTGACGTTGCCGAAGCTCAC 26837
||| | |||| | | ||| |||| ||| || ||| ||| | |||| | ||| |
Sbjct 898 GTTCAACGACGGTGAGAGCTATCTCGGCCAGGTGGTCGAAGTGAAGCTGCCCACGCTGTC 839
Query 26838 GCGCAAGATGGAAGAATGGCGCGGCGGCGGCATG-GTGGCGCCGGT-GAAATACGATTTC 26895
||||||||||| || | ||||||||||| ||| |||| ||||| || || ||| |||
Sbjct 838 CCGCAAGATGGAGGAGTATCGCGGCGGCGGTATGAATGGC-CCGGTCGACAT-CGACTTC 781
Query 26896 GGGCCGGAGGCGATGGAACTGGAGTGGTCGCTCGGCGGGATCGACAAG-AACATGCTGAA 26954
|| | |||| ||| || || || ||| | |||||| | || | | | | |||||
Sbjct 780 GGCCAGGAGAAGATCGAGCTCGAATGGAAGTGCGGCGGCCT-GATGCGCAGCGTACTGAA 722
Query 26955 CCAGTGGGGCACCCCGTCCGTCGATGGCGTGATGCTGCGCTTCGCTGGTGCTTACAAGAA 27014
|||| ||| || | | | | | |||| ||||||||| || || || ||| ||
Sbjct 721 TCAGTACGGCGCCACCACGCACAACGCCGTGCAGCTGCGCTTTGCCGGCGCCTACCAGCG 662
Query 27015 CGACAGCGACGACGA-GTGGACCGCAGTCGAAATCGTCGTGCGCGGCCGTTACTCCGAAG 27073
|||| | ||| ||||| || || ||||| || |||||||||||| || ||
Sbjct 661 CGACGATTCCACCGAGGTGGA-TGCGGTGGAAATTGTTGTGCGCGGCCGTCACAAGGAGA 603
Query 27074 TGGATTTCGGCAATGCGAAAGCGGGCGACGACACCACGACCAAGG-CAACGATGACGCTG 27132
| ||| ||| | | || | ||||| |||||| | || ||| |||| |
Sbjct 602 TTGATCCCGGTACCGGCAAGTCCGGCGATGACACCGAGTTTTCGGTCAA----GACGTCG 547
Query 27133 GC---CTACTACAAGCTGTCCATCAACGGCGAAACCGTGATCGAAATCGACGCGCAGAAC 27189
|| ||||||||||||| |||||||||| |||| ||||| ||||| | ||||
Sbjct 546 GCCAGCTACTACAAGCTGAGTATCAACGGCGTGCCCGTAATCGAGATCGATTTGATGAAC 487
Query 27190 TTCATCGA 27197
| |||||
Sbjct 486 ATGATCGA 479
>seq6336
Length=1727
Score = 100 bits (110), Expect = 6e-17
Identities = 207/303 (68%), Gaps = 4/303 (1%)
Strand=Plus/Minus
Query 11087 TGACGATCTGCCGCCATTGCCCGTCGCCGCACTGGCGCCCGCGTGCAAGCGACGT-ATGG 11145
|||||||||||||||| | ||| ||| |||| |||| || |||| ||| ||
Sbjct 1662 TGACGATCTGCCGCCAGGCGCGGTCCTGGCAGCGGCGACCGCCGGCCAGCG-CGTCGTGC 1604
Query 11146 GAAATGTCGATCTCGACGCGCT-CGTCGTCGGGACGGTCGCGGTTGAAGTCCGCGCCAGT 11204
|| | ||||||| || |||| || || | || | | |||| | | |||| ||
Sbjct 1603 GAGACATCGATCTGGATCCGCTGCGCCG-CCGGCTTGCCCTTGTTGCGGCGCTCGCCGGT 1545
Query 11205 CCAAAACGCATAGGCTTCGTGCGTCGTTGTGGATGGCGTAGAGAAGTGCGTCATCCGCAA 11264
|||||||| ||||| ||||| | | | | ||||| || ||||| ||| | ||| |
Sbjct 1544 CCAAAACGTGTAGGCCTCGTGGGCCATGCTCGATGGTGTGCTGAAGTAGGTCTTGCGCCA 1485
Query 11265 ATGCGAATGCGTCGCCATCCCCTTCGCTACCTTGTTCAGTTCGGCAAACTTGCTGACCCA 11324
| | ||| ||||||| || | || |||||||||| |||| ||| | | |||
Sbjct 1484 CTTCTTGTGCATCGCCATGCCGCTGGCGACCTTGTTCAATTCGTTGAACCCGTAGGTCCA 1425
Query 11325 GAAATACTCATCGAAATACAGGTCGCCGTTGTAGCTTTGGGCCGTGCGTGAACTGGTGCC 11384
||| | || ||||| || | | ||||| ||||| ||||| ||||||| | |||| ||
Sbjct 1424 GAAGAATTCGTCGAAGTAGAAATTGCCGTGGTAGCCCTGGGCGGTGCGTGCATTGGTCCC 1365
Query 11385 GAG 11387
|||
Sbjct 1364 GAG 1362
>seq6999
Length=1567
Score = 80.6 bits (88), Expect = 6e-11
Identities = 243/370 (66%), Gaps = 4/370 (1%)
Strand=Plus/Minus
Query 31442 CTCGTGGACAAAGGCACGTTCACGATCGATGAATTCGAGTTCCACGGCGCACCCGATCAG 31501
|| || ||||||||||| |||| | || || | |||| | |||||| |||||
Sbjct 1246 CTGGTCGACAAAGGCACCTTCATCGTGGACGAGGTGGAGTACAGCGGCGCGCCCGACATC 1187
Query 31502 ATCACGATCAGCGCGCGTTCGGCGTCGATGACGGATGCCATGCACGAGCGGCGCGACAAA 31561
||||| | |||||||| ||| |||| | | ||||| | |||||||||
Sbjct 1186 ATCACCGTGCGCGCGCGTAGTGCGGATCTGACTGCAGACATGCGCACGCGGCGCGAGCGC 1127
Query 31562 AGCTGGCACGGCCAGACGATCGGCGATATCGTCAAGACGATCGCCGTTCGGCACAAGTTG 31621
||||||||| | ||| | |||| | |||| || | |||| ||| ||
Sbjct 1126 AGCTGGCACAACACCACGTTGGGCGCCGTGCTCAATACCCTGGCCGGCGAGCATGGACTG 1067
Query 31622 ACACCCGCGCTCGGCG-ACGCGCTCGCCAAGGTC-AGGATCGCGCATATCGACCAGACGA 31679
|| ||||||| |||| | ||||| || | | | | | | | ||| |||||||| | |
Sbjct 1066 AC-CCCGCGCGTGGCGGAGGCGCTGGC-ACGCACTAAGTTGCCCCATCTCGACCAGGCCA 1009
Query 31680 GCGAAAGCGACATGTCGTTTTTGACCCGGCTCGCGAAGCGGTACGACGCGGTGATGACGG 31739
||| ||||| ||| | | || || || | |||| | ||| ||||| ||||
Sbjct 1008 ACGAGAGCGATATGAATCTGCTCACGCGCCTGGGCCAGCGCTTCGATGCGGTCGCCACGG 949
Query 31740 TCAAGGATGGGCGGCTGCTGTTCATGCCGATCGGGGCGGGCACGAGCGCGAGCGGTAAGC 31799
|||||| || || |||| ||||||||| || ||||| | |||| ||| || |
Sbjct 948 TCAAGGCAGGAGCATTGGTGTTTGCGCCGATCGGCGCCGGCACCACAGCGACCGGCAAAC 889
Query 31800 CGCTGCCGAC 31809
||||||||||
Sbjct 888 CGCTGCCGAC 879
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 113238145586944
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |