Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414525.1_2020 15-10-27] 12,086 sequences; 74,456,230 total letters Query= NC_021343.1 Length=35430 Score E Sequences producing significant alignments: (Bits) Value seq6992 248 2e-61 seq6336 100 6e-17 seq6999 80.6 6e-11 >seq6992 Length=1569 Score = 248 bits (274), Expect = 2e-61 Identities = 722/1088 (66%), Gaps = 63/1088 (6%) Strand=Plus/Minus Query 26129 TGCGGTCGGCCTGCGCGCGAAGATCGATCAACAAACCGG-CTGGCATAAGACGCTCTCGA 26187 |||| |||||||||| || |||||||| || | ||| || |||||| |||| || || | Sbjct 1522 TGCGCTCGGCCTGCGTGCCAAGATCGA-CACCGAACAGGGCTGGCACAAGAGCCTGTCCA 1464 Query 26188 ACGTCGCTGTGAATGGCGTCGAAGGGATCAGCAAGCCGGTTTCGTGGGATTTGCAGAACC 26247 |||| | ||| ||||||| || ||| |||| || |||||| ||||| | | Sbjct 1463 ACGTGCCCGTGGCTGGCGTCACCGGCATCTCCAAGGATGTGCATTGGGATCTGCAGGATC 1404 Query 26248 CGGCGACCGATGCGGGTTTCCTCAACGAGAATCAGGTCACGACGCTGATCAACCGGAACG 26307 |||| |||||||| || ||||||||||| | |||| |||||| | | |||| Sbjct 1403 CGGCCACCGATGCCGGCATCCTCAACGAGGGCGACATCACCACGCTGGTGACGTTCAACG 1344 Query 26308 GCTTCCGATTCTGGGGCTCGCGCACG-GCGTCCGACGATCCGCTGTTCGCGTTCGAAAAC 26366 || || |||||||| ||||||||| ||| | || || ||||||| ||||| | Sbjct 1343 GCCAGCGCTTCTGGGGATCGCGCACGTGCG-CGGAGGACAACATGTTCGCCTTCGAGACG 1285 Query 26367 TACACGCGCACGGCGCAGGTGCTGGCCGATACGATGGCCGAAGCACAGATGGTCGTTATC 26426 ||||||||| |||||| | |||||||| || || ||||||| | | || || Sbjct 1284 GCCACGCGCACCGCGCAGATCCTGGCCGACACCATCGCCGAAGGCGTGGCGTTCTACGTC 1225 Query 26427 GACGGCGCGATGATTCCGGCGCTACCGCGCGACGTGATCGAGGGCATCAACGCAAAAATG 26486 ||| ||||| || |||| | || ||||||| |||||||| || | Sbjct 1224 GACAAACCGATGCACCCCTCGCTGGTCAGGGATCTGATCGAAACGATCAACGCCAAGTTC 1165 Query 26487 CGTGAAATGAAAACCAAGGGCCAGTTGATCGGCGGCTCGGCGTGGTTCGACGCGGAACAG 26546 || || |||| | |||| | ||||||| | | || |||| ||| ||| | | Sbjct 1164 CGCGACCTGAAGTCGTCGGGCTACTTGATCGATGCCAACGCCTGGTACGA--CGGCATGG 1107 Query 26547 --AACGGCGTTGTGGCGCTGAAAGATGGCAAAGCGGTG---ATCAATTACGACTACACGC 26601 ||| ||| |||| |||||| ||| || ||| ||||||||||||||| Sbjct 1106 TCAACAGCGCCACCACGCTCGCCGATGGC---GCGCTGCGCATCGATTACGACTACACGC 1050 Query 26602 CGGTGCCCCCGCTGGAAAACCTCACGCTGCGCCAGAAGATCACCGACCAG-TATCTGGCC 26660 ||||||| |||||||| ||| | |||| | ||||||||||| ||||| || |||||| Sbjct 1049 CGGTGCCACCGCTGGAGAACTTGCAGCTGTACAAGAAGATCACC-ACCAGCTACCTGGCC 991 Query 26661 GATTTCGCGTCGCAGGTCAACGCGTAACGCACCCGCCTGGACAAGTCGTCCGGGCCAGAC 26720 || ||||| | ||||||||||||||||||||||| || | ||| || Sbjct 990 GACTTCGCCGAACGCGTCAACGCGTAACGCACCCGCCT---CAGAT--TCCCGG------ 942 Query 26721 ATAGGGAAGGGAGGATAGAA--AAATGGGAATGCCGTCCAAACT-GAAGCACTTCAACGT 26777 |||| |||| |||| ||||| |||| | ||||| | Sbjct 941 ----------------AGAACCCCATGGCTTTGCCCAAGAAACTCAAAGCGC-TCAACCT 899 Query 26778 GTTTCTCAACGGCGTGTCGTATATCGGGCAGACGGCGGAACTGACGTTGCCGAAGCTCAC 26837 ||| | |||| | | ||| |||| ||| || ||| ||| | |||| | ||| | Sbjct 898 GTTCAACGACGGTGAGAGCTATCTCGGCCAGGTGGTCGAAGTGAAGCTGCCCACGCTGTC 839 Query 26838 GCGCAAGATGGAAGAATGGCGCGGCGGCGGCATG-GTGGCGCCGGT-GAAATACGATTTC 26895 ||||||||||| || | ||||||||||| ||| |||| ||||| || || ||| ||| Sbjct 838 CCGCAAGATGGAGGAGTATCGCGGCGGCGGTATGAATGGC-CCGGTCGACAT-CGACTTC 781 Query 26896 GGGCCGGAGGCGATGGAACTGGAGTGGTCGCTCGGCGGGATCGACAAG-AACATGCTGAA 26954 || | |||| ||| || || || ||| | |||||| | || | | | | ||||| Sbjct 780 GGCCAGGAGAAGATCGAGCTCGAATGGAAGTGCGGCGGCCT-GATGCGCAGCGTACTGAA 722 Query 26955 CCAGTGGGGCACCCCGTCCGTCGATGGCGTGATGCTGCGCTTCGCTGGTGCTTACAAGAA 27014 |||| ||| || | | | | | |||| ||||||||| || || || ||| || Sbjct 721 TCAGTACGGCGCCACCACGCACAACGCCGTGCAGCTGCGCTTTGCCGGCGCCTACCAGCG 662 Query 27015 CGACAGCGACGACGA-GTGGACCGCAGTCGAAATCGTCGTGCGCGGCCGTTACTCCGAAG 27073 |||| | ||| ||||| || || ||||| || |||||||||||| || || Sbjct 661 CGACGATTCCACCGAGGTGGA-TGCGGTGGAAATTGTTGTGCGCGGCCGTCACAAGGAGA 603 Query 27074 TGGATTTCGGCAATGCGAAAGCGGGCGACGACACCACGACCAAGG-CAACGATGACGCTG 27132 | ||| ||| | | || | ||||| |||||| | || ||| |||| | Sbjct 602 TTGATCCCGGTACCGGCAAGTCCGGCGATGACACCGAGTTTTCGGTCAA----GACGTCG 547 Query 27133 GC---CTACTACAAGCTGTCCATCAACGGCGAAACCGTGATCGAAATCGACGCGCAGAAC 27189 || ||||||||||||| |||||||||| |||| ||||| ||||| | |||| Sbjct 546 GCCAGCTACTACAAGCTGAGTATCAACGGCGTGCCCGTAATCGAGATCGATTTGATGAAC 487 Query 27190 TTCATCGA 27197 | ||||| Sbjct 486 ATGATCGA 479 >seq6336 Length=1727 Score = 100 bits (110), Expect = 6e-17 Identities = 207/303 (68%), Gaps = 4/303 (1%) Strand=Plus/Minus Query 11087 TGACGATCTGCCGCCATTGCCCGTCGCCGCACTGGCGCCCGCGTGCAAGCGACGT-ATGG 11145 |||||||||||||||| | ||| ||| |||| |||| || |||| ||| || Sbjct 1662 TGACGATCTGCCGCCAGGCGCGGTCCTGGCAGCGGCGACCGCCGGCCAGCG-CGTCGTGC 1604 Query 11146 GAAATGTCGATCTCGACGCGCT-CGTCGTCGGGACGGTCGCGGTTGAAGTCCGCGCCAGT 11204 || | ||||||| || |||| || || | || | | |||| | | |||| || Sbjct 1603 GAGACATCGATCTGGATCCGCTGCGCCG-CCGGCTTGCCCTTGTTGCGGCGCTCGCCGGT 1545 Query 11205 CCAAAACGCATAGGCTTCGTGCGTCGTTGTGGATGGCGTAGAGAAGTGCGTCATCCGCAA 11264 |||||||| ||||| ||||| | | | | ||||| || ||||| ||| | ||| | Sbjct 1544 CCAAAACGTGTAGGCCTCGTGGGCCATGCTCGATGGTGTGCTGAAGTAGGTCTTGCGCCA 1485 Query 11265 ATGCGAATGCGTCGCCATCCCCTTCGCTACCTTGTTCAGTTCGGCAAACTTGCTGACCCA 11324 | | ||| ||||||| || | || |||||||||| |||| ||| | | ||| Sbjct 1484 CTTCTTGTGCATCGCCATGCCGCTGGCGACCTTGTTCAATTCGTTGAACCCGTAGGTCCA 1425 Query 11325 GAAATACTCATCGAAATACAGGTCGCCGTTGTAGCTTTGGGCCGTGCGTGAACTGGTGCC 11384 ||| | || ||||| || | | ||||| ||||| ||||| ||||||| | |||| || Sbjct 1424 GAAGAATTCGTCGAAGTAGAAATTGCCGTGGTAGCCCTGGGCGGTGCGTGCATTGGTCCC 1365 Query 11385 GAG 11387 ||| Sbjct 1364 GAG 1362 >seq6999 Length=1567 Score = 80.6 bits (88), Expect = 6e-11 Identities = 243/370 (66%), Gaps = 4/370 (1%) Strand=Plus/Minus Query 31442 CTCGTGGACAAAGGCACGTTCACGATCGATGAATTCGAGTTCCACGGCGCACCCGATCAG 31501 || || ||||||||||| |||| | || || | |||| | |||||| ||||| Sbjct 1246 CTGGTCGACAAAGGCACCTTCATCGTGGACGAGGTGGAGTACAGCGGCGCGCCCGACATC 1187 Query 31502 ATCACGATCAGCGCGCGTTCGGCGTCGATGACGGATGCCATGCACGAGCGGCGCGACAAA 31561 ||||| | |||||||| ||| |||| | | ||||| | ||||||||| Sbjct 1186 ATCACCGTGCGCGCGCGTAGTGCGGATCTGACTGCAGACATGCGCACGCGGCGCGAGCGC 1127 Query 31562 AGCTGGCACGGCCAGACGATCGGCGATATCGTCAAGACGATCGCCGTTCGGCACAAGTTG 31621 ||||||||| | ||| | |||| | |||| || | |||| ||| || Sbjct 1126 AGCTGGCACAACACCACGTTGGGCGCCGTGCTCAATACCCTGGCCGGCGAGCATGGACTG 1067 Query 31622 ACACCCGCGCTCGGCG-ACGCGCTCGCCAAGGTC-AGGATCGCGCATATCGACCAGACGA 31679 || ||||||| |||| | ||||| || | | | | | | | ||| |||||||| | | Sbjct 1066 AC-CCCGCGCGTGGCGGAGGCGCTGGC-ACGCACTAAGTTGCCCCATCTCGACCAGGCCA 1009 Query 31680 GCGAAAGCGACATGTCGTTTTTGACCCGGCTCGCGAAGCGGTACGACGCGGTGATGACGG 31739 ||| ||||| ||| | | || || || | |||| | ||| ||||| |||| Sbjct 1008 ACGAGAGCGATATGAATCTGCTCACGCGCCTGGGCCAGCGCTTCGATGCGGTCGCCACGG 949 Query 31740 TCAAGGATGGGCGGCTGCTGTTCATGCCGATCGGGGCGGGCACGAGCGCGAGCGGTAAGC 31799 |||||| || || |||| ||||||||| || ||||| | |||| ||| || | Sbjct 948 TCAAGGCAGGAGCATTGGTGTTTGCGCCGATCGGCGCCGGCACCACAGCGACCGGCAAAC 889 Query 31800 CGCTGCCGAC 31809 |||||||||| Sbjct 888 CGCTGCCGAC 879 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 113238145586944