Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414525.1_2020
15-10-27] 12,086 sequences; 74,456,230 total letters
Query= NC_021344.2
Length=176227
Score E
Sequences producing significant alignments: (Bits) Value
seq5177 123 3e-23
>seq5177
Length=2144
Score = 123 bits (136), Expect = 3e-23
Identities = 189/267 (71%), Gaps = 2/267 (1%)
Strand=Plus/Plus
Query 43394 GTTGCCCGATATGAAGAACAAAAACACAGTGTATTTGAAAAGCTGACTGAAAAACAACTG 43453
|| || || ||||| | || ||| || ||||| ||||| |||| || |||||||||
Sbjct 37 GTGGCGCGGTATGACCAGCAGAAATACCCGGTATTCGAAAAACTGATCGAGAAACAACTG 96
Query 43454 TCATTCTTCTGGCGACCGGAAGAAGTGGATCTGTCGATTGACCGTATGCAGTATGCGAAA 43513
|||||||||||||| |||||||| |||||| |||| |||||| | ||| |
Sbjct 97 TCATTCTTCTGGCGTCCGGAAGAGGTGGATGTGTCACAGGACCGTTCTGATTATCAGGGC 156
Query 43514 ATGCCGGAACATGAAAAAATCATTTTCGATTCTAACCTGCAATATCAAACCCTACTGGAT 43573
|||| || |||||||| ||| ||| ||||| | || || || || ||||||
Sbjct 157 CTGCCCGAGCATGAAAAGCACATCTTCATCAGCAACCTTAAGTACCAGACGCTGCTGGAT 216
Query 43574 ACCATTCAGGGACGCGGCCCTAACCTTGCATTTCTCCCGATTGCCTCTGATGTATCA-AT 43632
|||| ||||| || |||||||| | || || || ||| | | || || | | ||
Sbjct 217 TCCATCCAGGGCCGTAGCCCTAACGTGGCTTTGCTACCGCTGGTGTC-ATTGCCTGAGAT 275
Query 43633 GGAAACGTGGATCGAAACATGGGCGTT 43659
||||| ||||| ||||| ||||||||
Sbjct 276 TGAAACCTGGATAGAAACCTGGGCGTT 302
Score = 86.0 bits (94), Expect = 7e-12
Identities = 91/119 (76%), Gaps = 6/119 (5%)
Strand=Plus/Plus
Query 43964 CTGGAAGCGATTCGTTTCTATGTCTCGTTTACCTTTACGTTCAACTTTGCCGAACAGGGC 44023
||||||||||| || ||||| ||| || ||| | ||| |||||||| || ||
Sbjct 571 CTGGAAGCGATCCGCTTCTACGTCAGCTTCGCCTGCTCATTCGCCTTTGCCG---AGCGC 627
Query 44024 AA---GATGGAAGGTAACGCAAAGATCATGCGTCTGATTGCCCGTGATGAAGCACTTCA 44079
|| ||||||||| ||||| |||||||| || |||||||| ||||||||||| || ||
Sbjct 628 AAGGTGATGGAAGGCAACGCCAAGATCATCCGCCTGATTGCGCGTGATGAAGCCCTGCA 686
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 563713224156720
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |