Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414525.1_2020 15-10-27] 12,086 sequences; 74,456,230 total letters Query= NC_021347.1 Length=142563 Score E Sequences producing significant alignments: (Bits) Value seq7644 107 2e-18 seq6241 82.4 7e-11 >seq7644 Length=1437 Score = 107 bits (118), Expect = 2e-18 Identities = 123/165 (75%), Gaps = 3/165 (2%) Strand=Plus/Plus Query 105036 TTCGCCGGGTACTTCAACGTCGTCGCCGACTACACCAAGTGGGCTAAGG---ACCGCATG 105092 ||| |||| |||||| |||||||||||||| || ||| ||||| |||| || |||| Sbjct 176 TTCCCCGGCTACTTCCTCGTCGTCGCCGACTTCATCAACTGGGCGAAGGACAACGGCATC 235 Query 105093 CTCGTCGGTCCCGGCCGTGGTTCGGCCGGTGGCTCGCTCGTCTCGTACCTGATGGACATC 105152 | ||||| |||||||| || |||| || |||||| | | ||||| ||| | ||| Sbjct 236 CGGGTCGGCCCCGGCCGAGGCTCGGGCGCTGGCTCCATGGCGGCGTACGCCATGAAGATC 295 Query 105153 ACCGAGCTCGACCCGATCAAGTACGACCTGATGTTCGAGCGGTTC 105197 ||||| ||||||||| | ||| ||| || |||||||| ||| Sbjct 296 ACCGACCTCGACCCGCTTCGCCACGGCCTCATCTTCGAGCGCTTC 340 >seq6241 Length=1753 Score = 82.4 bits (90), Expect = 7e-11 Identities = 83/108 (77%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 21385 GCATCACGCAGCACGCCCTCGCGAAGGCCATTGGCGTCCCGCCGCGCCGAATCAACGAGA 21444 |||||| ||| |||| || ||| |||| ||||| ||||||| || |||||||||| Sbjct 1616 GCATCAGTCAGAACGCACTGGCGCGCGCCACCGGCGTGTCGCCGCGTCGTATCAACGAGA 1557 Query 21445 TCGTGAAGCGCAAGCGTCGCATCACGCCGGACACCGCGCTGCGACTGG 21492 ||||| | ||||||| ||||||| | |||||||| |||| |||| Sbjct 1556 TCGTGCTGGGCAAGCGCGGCATCACCGCCGACACCGCCGTGCGCCTGG 1509 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 456004698680880