Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414525.1_2020 15-10-27] 12,086 sequences; 74,456,230 total letters Query= NC_021531.1 Length=223989 Score E Sequences producing significant alignments: (Bits) Value seq8929 158 2e-33 seq3145 107 3e-18 >seq8929 Length=1248 Score = 158 bits (174), Expect = 2e-33 Identities = 186/249 (75%), Gaps = 2/249 (1%) Strand=Plus/Plus Query 98952 GACCGTACCGGTACAGGCACGCTTTCTATCTTCGGCCACCAGATGCGTTTCAACTTGCAA 99011 ||||| |||||||| ||||||| | |||||| |||||||| ||| | | Sbjct 867 GACCGCACCGGTACCGGCACGCGCAGCGTGTTCGGCTGGCAGATGCGCTTCGATCTCACT 926 Query 99012 GAAGGTTTCCCGCTGGTAACGACCAAGC-GTTGCCACCTGCGCTCTATTATCCATGAACT 99070 | || || |||||||| || |||||| | ||| | |||||||| || ||||| || || Sbjct 927 GCCGGCTTTCCGCTGGTCACCACCAAGAAGCTGC-ATCTGCGCTCGATCATCCACGAGCT 985 Query 99071 GCTGTGGTTCCTGAAAGGCGACACCAATATCCAGTACCTGAAAGATAATGGTGTAACCAT 99130 ||||||||| ||| | ||||| ||||| ||| ||| |||||||| || || || Sbjct 986 GCTGTGGTTTCTGCAGGGCGATACCAACATCGGGTATCTGAAAGACAACCAGGTGCGTAT 1045 Query 99131 TTGGGACGAATGGGCGGACAAAAATGGCGACCTCGGTCCGGTATACGGTAAGCAGTGGCG 99190 |||||||||||||| ||| | ||||||||||| || ||||| ||||| ||||||||||| Sbjct 1046 CTGGGACGAATGGGCCGACGACAATGGCGACCTTGGCCCGGTGTACGGCAAGCAGTGGCG 1105 Query 99191 GGCATGGAC 99199 | ||||| Sbjct 1106 GCGTTGGAC 1114 >seq3145 Length=4143 Score = 107 bits (118), Expect = 3e-18 Identities = 167/239 (70%), Gaps = 0/239 (0%) Strand=Plus/Plus Query 98952 GACCGTACCGGTACAGGCACGCTTTCTATCTTCGGCCACCAGATGCGTTTCAACTTGCAA 99011 ||||||||||| || || ||| |||| | || ||| |||||||||| || ||| || | Sbjct 522 GACCGTACCGGCACCGGGACGATTTCGGTGTTTGGCTACCAGATGCGATTTAACCTGGCA 581 Query 99012 GAAGGTTTCCCGCTGGTAACGACCAAGCGTTGCCACCTGCGCTCTATTATCCATGAACTG 99071 ||||| |||||||| | ||||| || ||| || || |||||||| || || Sbjct 582 GAAGGATTCCCGCTACTGACGACTAAAAAAGTCCATTTGAAATCCATTATCCACGAGTTG 641 Query 99072 CTGTGGTTCCTGAAAGGCGACACCAATATCCAGTACCTGAAAGATAATGGTGTAACCATT 99131 | ||||| | |||||| ||||||||| || | ||||| || || || | || Sbjct 642 TTATGGTTTTTAAAAGGCAGCACCAATATTGCCTATTTAAAAGAAAACGGCGTGAAAATC 701 Query 99132 TGGGACGAATGGGCGGACAAAAATGGCGACCTCGGTCCGGTATACGGTAAGCAGTGGCG 99190 ||||| || ||||| || | || |||| || |||||||| || | |||||||| Sbjct 702 TGGGATGAGTGGGCAGATGCCGAAGGTAACCTGGGCCCGGTATATGGCTACCAGTGGCG 760 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 716528534095440