Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414525.1_2020 15-10-27] 12,086 sequences; 74,456,230 total letters Query= NC_021772.1 Length=72394 Score E Sequences producing significant alignments: (Bits) Value seq5805 87.8 8e-13 >seq5805 Length=1879 Score = 87.8 bits (96), Expect = 8e-13 Identities = 167/246 (68%), Gaps = 0/246 (0%) Strand=Plus/Minus Query 12464 GCTGCAATGATTCTTCCTCGTTCAGGTCTAGGCCATAAACATGGTGTAGTGCTTGGGAAC 12523 || || |||||| | ||||| || || ||||||| || || ||| | ||| | || ||| Sbjct 1124 GCCGCGATGATTTTGCCTCGCTCTGGCTTAGGCCACAAGCACGGTATCGTGTTGGGCAAC 1065 Query 12524 CTTACTGGTCTGATTGATTCAGATTATCAGGGTGAACTTATGGTAAGCCTCTGGAATCGC 12583 || || |||| ||||||||||| ||||| | | | || |||||| || Sbjct 1064 CTGGTAGGGTTGATCGATTCAGATTACCAGGGCCAGTTGCTTGTTTCATGCTGGAACCGT 1005 Query 12584 TCTACAGAGCCTTTTACTGTTAACCCTGGTGACCGTATTGCTCAGATGGTAATCGTGCCT 12643 || |||||| |||| | | || ||| || ||||| || |||||||| || ||||| Sbjct 1004 AGTAAAGAGCCGTTTATTTTGAATCCTCTGGAACGTATCGCGCAGATGGTGATTGTGCCA 945 Query 12644 GTAATGCAGCCTGAGTTCGTTGTAGTGGATTCATTTGAATCTACTGAACGTGGTGCTGGT 12703 || | ||| | || || | | |||||| |||| ||| | ||||| || | || Sbjct 944 GTGGTACAGGCAGATTTTCATATTGTGGATGAATTTACATCCAGCGAACGCGGCGAAGGC 885 Query 12704 GGCTTT 12709 |||||| Sbjct 884 GGCTTT 879 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 231501895181330