Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414525.1_2020 15-10-27] 12,086 sequences; 74,456,230 total letters Query= NC_021774.1 Length=29742 Score E Sequences producing significant alignments: (Bits) Value seq6992 174 3e-39 >seq6992 Length=1569 Score = 174 bits (192), Expect = 3e-39 Identities = 638/972 (66%), Gaps = 68/972 (7%) Strand=Plus/Minus Query 14658 GCTTACGCCACTGCGCGTGCACTCGGCCTGCGTGCTTACATCG--ACCAGACTGTCGGCT 14715 || || |||||||||||||| |||||||||||||| | |||| ||| || | |||| Sbjct 1539 GCATATGCCACTGCGCGTGCGCTCGGCCTGCGTGCCAAGATCGACACCGAACAG--GGCT 1482 Query 14716 GGCACAAAACCCTGTCTAACGTTGGTGTACAGGGCGTTACCGGCATCAGTGCCTCAGTGT 14775 ||||||| | |||||| ||||| || ||||| ||||||||| | | ||| Sbjct 1481 GGCACAAGAGCCTGTCCAACGTGCCCGTGGCTGGCGTCACCGGCATC--TCCAAGGATGT 1424 Query 14776 TC--TGGGATTTGCAGGCATCCGG-CACCGATGCTGACCTGCTCAACAAGGCCGGGGTTA 14832 | |||||| |||||| |||||| ||||||||| | | | |||||| ||| || | | Sbjct 1423 GCATTGGGATCTGCAGG-ATCCGGCCACCGATGCCGGCATCCTCAACGAGGGCGACATCA 1365 Query 14833 CGACGCTGGT-ACG--CAAGGACGGTTTCCGTTTCTGGGGTAACCGCACCTGCTCAGATG 14889 | |||||||| ||| || |||| || |||||||| ||||| ||| | || | Sbjct 1364 CCACGCTGGTGACGTTCA---ACGGCCAGCGCTTCTGGGGATCGCGCACGTGCGCGGAGG 1308 Query 14890 ACCCGCTTTTTCTGTTTGAGAACTACACCCGTACCGCGCAGGTACTGGCCGACACGATGG 14949 || | || || |||| ||| || ||||||||| | ||||||||||| || | Sbjct 1307 ACAACATGTTCGCCTTCGAGACGGCCACGCGCACCGCGCAGATCCTGGCCGACACCATCG 1248 Query 14950 CTGAAGCGCACATGTGGGCG------GTCGATAAGCCCATTACCGCCACGCTCATTCGTG 15003 | |||| || || |||| ||||| || || || | || |||| | | | Sbjct 1247 CCGAAG-GC----GT-GGCGTTCTACGTCGACAAACCGATGCACCCCTCGCTGGTCAGGG 1194 Query 15004 ACATTGTTGACGGCATCAATGCCAAATTCCGCGAGCTGAAAACAAACGGCTACATCGTGG 15063 | | | || ||||| ||||| |||||||| ||||| | |||||| | | | Sbjct 1193 ATCTGATCGAAACGATCAACGCCAAGTTCCGCGACCTGAAGTCGTCGGGCTACTTGATCG 1134 Query 15064 ACGGTGAATGCTGGTTCGACGAGGAATCGAACGACAAGGAAACCCTGAAAGCC---GGGA 15120 | | | ||||| |||| || || | | ||| | ||| | ||| || Sbjct 1133 ATGCCAACGCCTGGTACGAC--GGCAT-GGTCAACAGCGCCACCACGCTCGCCGATGGCG 1077 Query 15121 AACTGTATATCGACTACGACTATACGCCGGTTCCGCCACTGGAGAGCCTGACCCTGCGCC 15180 ||| ||||| |||||||| |||||||| || || ||||||| | || ||| | Sbjct 1076 CGCTGCGCATCGATTACGACTACACGCCGGTGCCACCGCTGGAGAACTTGCAGCTGTACA 1017 Query 15181 AGCGTATCACCGATAAATATCTGGTGAATCTGGCCGAATCGGTCAACAGCTAAGG----A 15236 || |||||| | || |||| | | |||||| |||||| ||| | Sbjct 1016 AGAAGATCACCACCAGCTACCTGGCCGACTTCGCCGAACGCGTCAACGCGTAACGCACCC 957 Query 15237 GCCTGAAAT--------AA---CATGGCACTACCCCGTAAACTCAAATATCTGAATATGT 15285 |||| | || || |||||| | ||| ||||||||| || || ||| Sbjct 956 GCCTCAGATTCCCGGAGAACCCCATGGCTTTGCCCAAGAAACTCAAAGCGCTCAACCTGT 897 Query 15286 TCAACGATGGCCTCAGCTACATGGG---TGTTGTTGAATCCGTAACGTTGCCGAAGCTGA 15342 ||||||| || ||||| | || || || ||| || | | |||| | |||| Sbjct 896 TCAACGACGGTGAGAGCTATCTCGGCCAGGTGGTCGAA---GTGAAGCTGCCCACGCTGT 840 Query 15343 CCCGCAAGCTCGAAAACTATCGCGGCGGCGGTATGAATGGCGCGGCAGCGATTGACCTCG 15402 |||||||| | || | |||||||||||||||||||||||| ||| | || ||| ||| Sbjct 839 CCCGCAAGATGGAGGAGTATCGCGGCGGCGGTATGAATGGCCCGGTCGACATCGACTTCG 780 Query 15403 GCCTCGACGATGATGCGCTCACCGTCGAATGGTCTGTCGGCGGCCTGCCTGATGTGGCGC 15462 ||| || || ||| || | |||||||| || |||| | |||||||| | || Sbjct 779 GCCAGGA-GAAGAT-CGAGC----TCGAATGG-AAGT--GCGG-CGGCCTGATGCGCAGC 730 Query 15463 -TGTGGGCGCAGTACGCCGCC-CCGGGTGCTGATGCTGTGCCGCTGCGTTTTGCCGGTTC 15520 | | ||||||| |||| || | | | || |||| |||||| |||||||| | Sbjct 729 GTACTGAATCAGTACGGCGCCACCACGCAC-AACGCCGTGCAGCTGCGCTTTGCCGGCGC 671 Query 15521 TTACCAGCGCGACGACACCGGCGAAATCGTGGCGGTCGAGGTGGTCATGCGTGGCCGTCA 15580 |||||||||||||| || ||| | | ||||| || | || |||| |||||||| Sbjct 670 CTACCAGCGCGACGATTCCACCGAGGTGGATGCGGTGGAAATTGTTGTGCGCGGCCGTCA 611 Query 15581 TAAAGAAATCGA 15592 || || || || Sbjct 610 CAAGGAGATTGA 599 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 95039157903328