Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414525.1_2020 15-10-27] 12,086 sequences; 74,456,230 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq151 100 3e-16 seq1324 91.5 1e-13 seq75 84.2 2e-11 >seq151 Length=51439 Score = 100 bits (110), Expect = 3e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||| || | || ||| | || || || || |||||||| || || || | | Sbjct 38272 ATGCAGATTTTCGTGAAGACGTTGACAGGGAAGACGATTACGCTGGACGTGGAGCCGTCT 38213 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||| | | || | || || || |||||||| ||||| || || || || || || || Sbjct 38212 GACTCGATTGACAATGTGAAGCAGAAGATCCAGGACAAGGAGGGCATCCCGCCTGACCAG 38153 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || || ||||||||||||| || |||||||| || | | || || || ||| Sbjct 38152 CAGCGGCTGATCTTTGCCGGCAAGCAGCTGGAAGACGGCCGTACGCTGAGTGACTACAAC 38093 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGC 24931 || || ||||| ||||| || ||| ||||| | || ||||||| ||| Sbjct 38092 ATCCAGAAGGAGTCGACGCTGCACCTGGTGCTTCGCCTGCGCGGTGGC 38045 Score = 98.7 bits (108), Expect = 9e-16 Identities = 159/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 ||||||||| || | || ||| | || || || || || ||||| || || || | | Sbjct 38501 GATGCAGATTTTCGTGAAGACGTTGACAGGGAAGACGATCACGCTGGACGTGGAGCCGTC 38442 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 ||| | | || | || || || |||||||| ||||| || || || || || || || Sbjct 38441 TGACTCGATTGACAATGTGAAGCAGAAGATCCAGGACAAGGAGGGCATCCCGCCTGACCA 38382 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 || || ||||||||||||| || |||||||| || | | || || || || Sbjct 38381 GCAGCGGCTGATCTTTGCCGGCAAGCAGCTGGAAGACGGCCGCACGCTGAGCGACTACAA 38322 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGC 24931 ||| || ||||| ||||| || ||| ||||| | || ||||||| ||| Sbjct 38321 CATCCAGAAGGAGTCGACGCTGCACCTGGTGCTTCGCCTGCGCGGTGGC 38273 >seq1324 Length=13147 Score = 91.5 bits (100), Expect = 1e-13 Identities = 113/155 (73%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| | || ||| | || || || || || ||||| || || || | || Sbjct 2293 ATGCAGATCTTTGTGAAGACGTTGACAGGCAAGACGATCACGCTGGACGTGGAGCCGTCC 2234 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 |||| | || | || || || ||||| || || || ||||| || ||||| || || Sbjct 2233 GACAGCATTGACAATGTGAAGCAGAAGATTCAGGATAAGGAAGGCATTCCTCCTGACCAG 2174 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGA 24858 || ||| ||||||||||||| || || ||||| || Sbjct 2173 CAGCGTCTGATCTTTGCCGGCAAGCAACTGGAAGA 2139 >seq75 Length=61118 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/206 (70%), Gaps = 6/206 (3%) Strand=Plus/Plus Query 138478 ATCAAGTCGTTTATCAGATATCTGTTTATGACCTGAAATTCACCGGCCAATACTCGACGA 138537 ||||| || || ||||| || |||||| | | ||| || || |||| || || || Sbjct 20772 ATCAATTCCTTCATCAGGTACTTGTTTACAATCGTAAACTCGCCAGCCAGCACGCGGCGG 20831 Query 138538 ACGTAAATGTTGTTGGTGAAAGGCTCAAACGATTCGTTGTTTCCCAGAATCTGAGCCGTG 138597 ||| || || ||| | ||||||| ||| |||||||| ||||||||||| ||||| Sbjct 20832 TTGTACATATTCGACGTGTACGGCTCAATCGACTCGTTGTTGCCCAGAATCTGGGCCGTC 20891 Query 138598 GTCGCGGTCGGCATGTACGCCACCAAAAGAGAATTCCGTAAACCGTGAAGCTTGAT-TCG 138656 | || |||||||| |||||| | ||||| || || | || | |||||| || Sbjct 20892 GAAGCCGTCGGCATTGGCGCCACGAGCAGAGAGTTGCGAATGCC---ATACTTGATCACG 20948 Query 138657 T--TCCTTGAGCGACGACCAGTCCCA 138680 | ||||| | | || ||||||||| Sbjct 20949 TTCTCCTTCAACTCCGTCCAGTCCCA 20974 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449829631720080