Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414525.1_2020 15-10-27] 12,086 sequences; 74,456,230 total letters Query= NC_022059.1 Length=77367 Score E Sequences producing significant alignments: (Bits) Value seq7712 230 1e-55 seq2623 122 4e-23 seq7041 98.7 5e-16 seq304 93.3 2e-14 >seq7712 Length=1425 Score = 230 bits (254), Expect = 1e-55 Identities = 457/669 (68%), Gaps = 21/669 (3%) Strand=Plus/Plus Query 67559 GTGGACACCATTCCCACCGGCTCGATAGCTCTGGACGCCGCTCTCGGCATCGGGGGGTAT 67618 || || | |||||| ||||| ||| | ||||| ||| || || ||||| || Sbjct 717 GTCGAAATCATTCCGACCGGTTCGCTGATGTTGGACATCGCACTGGGGATCGGCGGCCTG 776 Query 67619 CCGAGGGGCCGGGTAGTGGAGATCTACGGTCCTGAGTCTTCAGGGAAGTCAACGTTGTGC 67678 |||| |||||| || ||||| |||||||| || || || || || ||| | || ||| | Sbjct 777 CCGAAGGGCCGCGTCGTGGAAATCTACGGGCCGGAATCCTCGGGCAAGACCACCTTGACC 836 Query 67679 CTCCACGCGGTGGC-CAATGCCCAGAAGGCCGGTGGCAACGCCGCCTACATCGACGCCGA 67737 || || || | || || |||| |||| ||||||| ||| || | |||||||||||| Sbjct 837 CTGCAGGCCATTGCGCAGTGCC-AGAAATTGGGTGGCACCGCTGCGTTCATCGACGCCGA 895 Query 67738 ACATTCTCTCGACCCTGAGTACGCCGCGGCGCTCGGGGTGGATGTCGACAATCTCGTGGT 67797 ||| | |||||||| ||||| | ||| || || |||||||| |||| || | Sbjct 896 GCATGCGCTCGACCCGATCTACGCGGGCAAGCTGGGCGTCAATGTCGACGATCTGCTGCT 955 Query 67798 TGTGCAGCCAGACACTGGCGAGCAGGCCCTGGAGATCGTTGACCTTCTCGTCAAGTCTGG 67857 |||||| ||||| || |||||||| ||||| |||| ||| | || || || | Sbjct 956 ATCGCAGCCGGACACCGGTGAGCAGGCGCTGGAAATCGCCGACATGCTGGTGCGCTCGAG 1015 Query 67858 CGAGGTTTCCATCATCGTTGTG---GACTCTGTGGCGGCCCTGGTGCCGCGGGCGGAGCT 67914 | || || || ||||| ||| ||||| ||||| || ||| ||| |||||| | Sbjct 1016 CTCGG--TCGAT-ATCGTGGTGATCGACTCGGTGGCTGCACTGACGCCAAAGGCGGAAAT 1072 Query 67915 CGAAGGGGACATCGGGGACTCGCACGTCGGCCTGCATGCCCGCCTGATGTCTCAGGCCAT 67974 |||||| || || || ||| || || ||||| || || |||||| || || | Sbjct 1073 CGAAGGCGAGATGGGCGACCAGCTGCCAGGTCTGCAGGCACGTCTGATGAGCCAAGCGCT 1132 Query 67975 GCGCAAGCTGACCGGCACGATTGCCAGC--ACCAACACGCTCACCCTGTGGGTGAATCAG 68032 ||||||||||||||| | || | ||| ||||||| | | | | || ||| Sbjct 1133 GCGCAAGCTGACCGGTAACAT--CAAGCGTTCCAACACCTTGGTGGTCTTCATCAACCAG 1190 Query 68033 CTGCGCGAGAAGATCGGCAACGT------GGGCTACGGCCCGAATGAGACCACCACCGGT 68086 ||||| | ||||||||| | | ||| | ||||| | | | |||||||| Sbjct 1191 TTGCGCCACAAGATCGGCGTCATGATGCCGGGTCAGAGCCCGGAAGTG---ACCACCGGC 1247 Query 68087 GGTAAGGCTCTGCGCTTCTACGCCTCGGTGCGTATGGATGTCCGCAGGATCGCCACCGAG 68146 ||||| || || |||||||||||||||||| |||| |||| | |||| | | Sbjct 1248 GGTAACGCGTTGAAATTCTACGCCTCGGTGCGTCTGGACATCCGTCGTATCGGCGCGATC 1307 Query 68147 AAGGAAGGCGATGAGGCTGTCGGCAACCGCACGCGCGTGAAGGTTGTCAAGAACAAGCTG 68206 ||| |||| || ||| ||||||||| || | ||||| |||||||||||| || Sbjct 1308 AAGAAAGGTGACGAGATCATCGGCAACCAGACTAAGATCAAGGTGGTCAAGAACAAGTTG 1367 Query 68207 GCGCCTCCG 68215 ||||||||| Sbjct 1368 GCGCCTCCG 1376 >seq2623 Length=5434 Score = 122 bits (134), Expect = 4e-23 Identities = 286/428 (67%), Gaps = 13/428 (3%) Strand=Plus/Minus Query 67709 GGTGGCAACGCCGCCTACATCGACGCCGAACATTCTCTCGACCCTGAGTACGCCGCGGCG 67768 || ||| ||| || | ||||| ||||| ||| | || ||||| | || || || Sbjct 432 GGCGGCGTCGCGGCTTTTATCGATGCCGAGCATGCGCTGGACCCGCAATATGCAGCCAAA 373 Query 67769 CTCGGGGTGGATGTCGACAATCTCGTGGTTGTGCAGCCAGACACTGGCGAGCAGGCCCTG 67828 || || ||| |||| |||| || || |||||||||||||||||| ||||| ||| Sbjct 372 CTGGGCGTGAATGTGCCTGATCTGTTGATTTCGCAGCCAGACACTGGCGAACAGGCGCTG 313 Query 67829 GAGATCGTTGACCTTCTCGTCAAGTCTGGCGAGGTTTCCATCATCGTTGTGGACTCTGTG 67888 || |||| ||| | || || || || || || | || || |||||||| Sbjct 312 GAAATCGCCGACATGCTGGTGCGTTCAGGTTCTGTGGATATTGTGGTGGTTGACTCTGTC 253 Query 67889 GCGGCCCTGGTGCCGCGGGCGGAGCTCGAAGGGGACATCGGGGACTCGCACGTCGGCCTG 67948 || || ||| ||||| || ||| | ||||| || || || ||| || | |||||| Sbjct 252 GCCGCGCTGACTCCGCGTGCAGAGATTGAAGGCGAAATGGGCGACAGCCATATGGGCCTG 193 Query 67949 CATGCCCGCCTGATGTCTCAGGCCATGCGCAAGCTGACCGGCACGATTGCCAGC--ACCA 68006 || || ||||||||||| |||||| |||| || ||||| || | || | ||| |||| Sbjct 192 CAAGCGCGCCTGATGTCGCAGGCCTTGCGTAAACTGACTGGTAACAT--CAAGCGTACCA 135 Query 68007 ACACGCTCACCCTGTGGGTGAATCAGCTGCGCGAGAAGATCGGCAACGTGGGCTACGG-- 68064 | || || | | | || ||| | || ||| |||||| | || | ||| Sbjct 134 ATACACTGGTGATCTTCATTAACCAGATCCGTATGAAAATCGGCGTCATG---TTCGGTA 78 Query 68065 -CCCGAATGAGACCACCACCGGTGGTAAGGCTCTGCGCTTCTACGCCTCGGTGCGTATGG 68123 |||| || || || ||||| || || || || ||||||||||| ||||| ||| Sbjct 77 ACCCG---GAAACAACGACCGGCGGCAACGCGCTTAAATTCTACGCCTCTGTGCGCCTGG 21 Query 68124 ATGTCCGC 68131 || ||||| Sbjct 20 ATATCCGC 13 >seq7041 Length=1559 Score = 98.7 bits (108), Expect = 5e-16 Identities = 372/576 (65%), Gaps = 17/576 (3%) Strand=Plus/Plus Query 67562 GACACCATTCCCACCGGCTCGATAGCTCTGGACGCCGCTCTCGGCATCGGGGGGTATCCG 67621 ||| ||||||| |||||| | | | || |||| ||| || ||||| || || || Sbjct 206 GACGCCATTCCAACCGGCGCTCTGTCACTTGACGTCGCCCTTGGCATTGGTGGCCTGCCC 265 Query 67622 AGGGGCCGGGTAGTGGAGATCTACGGTCCTGAGTCTTCAGGGAAGTCAACGTTGTGCCTC 67681 | ||||| || | || | | ||| |||||| || || |||| | || Sbjct 266 CGCGGCCGTGTCATTGAAGTTTTCGGCGTAGAGTCTGGCGGTAAAACAACCATCACGCTT 325 Query 67682 CACGCGGTGGCCAATGCCCAGAAGGCCGGT-GGCAACGCCGCCTACATCGACGCCGAACA 67740 ||||| || ||| | ||||| | | | || || | |||||| | ||||||| ||||| Sbjct 326 CACGCTGTTGCCGAAGCCCA-ACGTCAGGGCGGTATCGCCGCGTTTATCGACGTAGAACA 384 Query 67741 TTCTCTCGACCCTGAGTACGCCGCGGCGCTCGGGGTGGATGTCGACAATCTCGTGGTTGT 67800 | ||||| ||||| ||||| ||| | || || ||| | ||| || |||| Sbjct 385 CGCCCTCGATCCTGAATACGCTAAAGCGATTGGCGTCGATATTGACTCCCTGCTGGTCTC 444 Query 67801 GCAGCCAGACACTGGCGAGCAGGCCCTGGAGATCGTTGACCTTCTCGTCAAGTCTGGCGA 67860 ||||| ||| || || | || || || ||| | || | || | || | Sbjct 445 TCAGCCCAGCACCGGTGAAGAAGCGCTAGAAATCATGGAACAGCTGATTCGCAGCGGTGC 504 Query 67861 GGTTTCCATCATCGTTGTGGACTCTGTGGCGGCCCTGGTGCCGCGGGCGGAGCTCGAAGG 67920 || |||||||||| ||||||| || || || || || | || | ||||| Sbjct 505 TGTCGACATCATCGTTCTGGACTCGGTTGCCGCTCTTGTCACCAAAAACGAAATTGAAGG 564 Query 67921 GGACATCGGGGACTCGCACGTCGGCCTGCATGCCCGCCTGATGTCTCAGGCCATGCGCAA 67980 || || || || | ||||||||| |||| |||||| ||||||||||||| |||| || Sbjct 565 CGAAATGGGTGATACCCACGTCGGCTTGCAGGCCCGCTTGATGTCTCAGGCTCTGCGTAA 624 Query 67981 GCT--GACCGG-CACGATTGCCAGCACCAACACGCTCACCCTGTGGGTGAATCAGCTGCG 68037 || ||||| |||| ||| || ||||||| || | | || || |||||||| Sbjct 625 ACTCACACCGGTCACG---GCCCGCTCCAACACTGTCGTAATCTTCGTCAACCAGCTGCG 681 Query 68038 CGAGAAGATCGGC---AACGTGGGCTACGGCCCGAATGAGACCACCACCGGTGGTAAGGC 68094 || || ||||| | | ||| || |||||| |||||| | |||||| || Sbjct 682 TGAAAAAGTCGGCGTGATGTTCGGCAAC--CCCGAA----ACCACCCCAGGTGGTCGCGC 735 Query 68095 TCTGCGCTTCTACGCCTCGGTGCGTATGGATGTCCG 68130 ||||| ||||| | || || ||| | || || || Sbjct 736 GCTGCGTTTCTATTCTTCTGTCCGTCTTGAAGTACG 771 >seq304 Length=36179 Score = 93.3 bits (102), Expect = 2e-14 Identities = 134/189 (71%), Gaps = 0/189 (0%) Strand=Plus/Plus Query 67801 GCAGCCAGACACTGGCGAGCAGGCCCTGGAGATCGTTGACCTTCTCGTCAAGTCTGGCGA 67860 |||||| ||| |||| || | || |||||||||| |||| || ||| ||| || | Sbjct 15249 GCAGCCCGACTCTGGAGAAGAAGCGCTGGAGATCGCTGACACACTGATCAGGTCGGGAGC 15308 Query 67861 GGTTTCCATCATCGTTGTGGACTCTGTGGCGGCCCTGGTGCCGCGGGCGGAGCTCGAAGG 67920 || | | |||| | ||| ||| || ||||| ||||| || || ||||| ||||| Sbjct 15309 AGTCGACCTTGTCGTGCTAGACAGTGTAGCTGCCCTCGTGCCCCGAGCAGAGCTGGAAGG 15368 Query 67921 GGACATCGGGGACTCGCACGTCGGCCTGCATGCCCGCCTGATGTCTCAGGCCATGCGCAA 67980 ||| || || ||| ||| | | ||||| || ||||| ||| ||| || ||||||| Sbjct 15369 GGAAATGGGAGACCAGCAAATTGCTCTGCAGGCACGCCTAATGAGTCAAGCTCTGCGCAA 15428 Query 67981 GCTGACCGG 67989 |||||| || Sbjct 15429 GCTGACTGG 15437 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 247413151137888