Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414525.1_2020
15-10-27] 12,086 sequences; 74,456,230 total letters
Query= NC_022059.1
Length=77367
Score E
Sequences producing significant alignments: (Bits) Value
seq7712 230 1e-55
seq2623 122 4e-23
seq7041 98.7 5e-16
seq304 93.3 2e-14
>seq7712
Length=1425
Score = 230 bits (254), Expect = 1e-55
Identities = 457/669 (68%), Gaps = 21/669 (3%)
Strand=Plus/Plus
Query 67559 GTGGACACCATTCCCACCGGCTCGATAGCTCTGGACGCCGCTCTCGGCATCGGGGGGTAT 67618
|| || | |||||| ||||| ||| | ||||| ||| || || ||||| ||
Sbjct 717 GTCGAAATCATTCCGACCGGTTCGCTGATGTTGGACATCGCACTGGGGATCGGCGGCCTG 776
Query 67619 CCGAGGGGCCGGGTAGTGGAGATCTACGGTCCTGAGTCTTCAGGGAAGTCAACGTTGTGC 67678
|||| |||||| || ||||| |||||||| || || || || || ||| | || ||| |
Sbjct 777 CCGAAGGGCCGCGTCGTGGAAATCTACGGGCCGGAATCCTCGGGCAAGACCACCTTGACC 836
Query 67679 CTCCACGCGGTGGC-CAATGCCCAGAAGGCCGGTGGCAACGCCGCCTACATCGACGCCGA 67737
|| || || | || || |||| |||| ||||||| ||| || | ||||||||||||
Sbjct 837 CTGCAGGCCATTGCGCAGTGCC-AGAAATTGGGTGGCACCGCTGCGTTCATCGACGCCGA 895
Query 67738 ACATTCTCTCGACCCTGAGTACGCCGCGGCGCTCGGGGTGGATGTCGACAATCTCGTGGT 67797
||| | |||||||| ||||| | ||| || || |||||||| |||| || |
Sbjct 896 GCATGCGCTCGACCCGATCTACGCGGGCAAGCTGGGCGTCAATGTCGACGATCTGCTGCT 955
Query 67798 TGTGCAGCCAGACACTGGCGAGCAGGCCCTGGAGATCGTTGACCTTCTCGTCAAGTCTGG 67857
|||||| ||||| || |||||||| ||||| |||| ||| | || || || |
Sbjct 956 ATCGCAGCCGGACACCGGTGAGCAGGCGCTGGAAATCGCCGACATGCTGGTGCGCTCGAG 1015
Query 67858 CGAGGTTTCCATCATCGTTGTG---GACTCTGTGGCGGCCCTGGTGCCGCGGGCGGAGCT 67914
| || || || ||||| ||| ||||| ||||| || ||| ||| |||||| |
Sbjct 1016 CTCGG--TCGAT-ATCGTGGTGATCGACTCGGTGGCTGCACTGACGCCAAAGGCGGAAAT 1072
Query 67915 CGAAGGGGACATCGGGGACTCGCACGTCGGCCTGCATGCCCGCCTGATGTCTCAGGCCAT 67974
|||||| || || || ||| || || ||||| || || |||||| || || |
Sbjct 1073 CGAAGGCGAGATGGGCGACCAGCTGCCAGGTCTGCAGGCACGTCTGATGAGCCAAGCGCT 1132
Query 67975 GCGCAAGCTGACCGGCACGATTGCCAGC--ACCAACACGCTCACCCTGTGGGTGAATCAG 68032
||||||||||||||| | || | ||| ||||||| | | | | || |||
Sbjct 1133 GCGCAAGCTGACCGGTAACAT--CAAGCGTTCCAACACCTTGGTGGTCTTCATCAACCAG 1190
Query 68033 CTGCGCGAGAAGATCGGCAACGT------GGGCTACGGCCCGAATGAGACCACCACCGGT 68086
||||| | ||||||||| | | ||| | ||||| | | | ||||||||
Sbjct 1191 TTGCGCCACAAGATCGGCGTCATGATGCCGGGTCAGAGCCCGGAAGTG---ACCACCGGC 1247
Query 68087 GGTAAGGCTCTGCGCTTCTACGCCTCGGTGCGTATGGATGTCCGCAGGATCGCCACCGAG 68146
||||| || || |||||||||||||||||| |||| |||| | |||| | |
Sbjct 1248 GGTAACGCGTTGAAATTCTACGCCTCGGTGCGTCTGGACATCCGTCGTATCGGCGCGATC 1307
Query 68147 AAGGAAGGCGATGAGGCTGTCGGCAACCGCACGCGCGTGAAGGTTGTCAAGAACAAGCTG 68206
||| |||| || ||| ||||||||| || | ||||| |||||||||||| ||
Sbjct 1308 AAGAAAGGTGACGAGATCATCGGCAACCAGACTAAGATCAAGGTGGTCAAGAACAAGTTG 1367
Query 68207 GCGCCTCCG 68215
|||||||||
Sbjct 1368 GCGCCTCCG 1376
>seq2623
Length=5434
Score = 122 bits (134), Expect = 4e-23
Identities = 286/428 (67%), Gaps = 13/428 (3%)
Strand=Plus/Minus
Query 67709 GGTGGCAACGCCGCCTACATCGACGCCGAACATTCTCTCGACCCTGAGTACGCCGCGGCG 67768
|| ||| ||| || | ||||| ||||| ||| | || ||||| | || || ||
Sbjct 432 GGCGGCGTCGCGGCTTTTATCGATGCCGAGCATGCGCTGGACCCGCAATATGCAGCCAAA 373
Query 67769 CTCGGGGTGGATGTCGACAATCTCGTGGTTGTGCAGCCAGACACTGGCGAGCAGGCCCTG 67828
|| || ||| |||| |||| || || |||||||||||||||||| ||||| |||
Sbjct 372 CTGGGCGTGAATGTGCCTGATCTGTTGATTTCGCAGCCAGACACTGGCGAACAGGCGCTG 313
Query 67829 GAGATCGTTGACCTTCTCGTCAAGTCTGGCGAGGTTTCCATCATCGTTGTGGACTCTGTG 67888
|| |||| ||| | || || || || || || | || || ||||||||
Sbjct 312 GAAATCGCCGACATGCTGGTGCGTTCAGGTTCTGTGGATATTGTGGTGGTTGACTCTGTC 253
Query 67889 GCGGCCCTGGTGCCGCGGGCGGAGCTCGAAGGGGACATCGGGGACTCGCACGTCGGCCTG 67948
|| || ||| ||||| || ||| | ||||| || || || ||| || | ||||||
Sbjct 252 GCCGCGCTGACTCCGCGTGCAGAGATTGAAGGCGAAATGGGCGACAGCCATATGGGCCTG 193
Query 67949 CATGCCCGCCTGATGTCTCAGGCCATGCGCAAGCTGACCGGCACGATTGCCAGC--ACCA 68006
|| || ||||||||||| |||||| |||| || ||||| || | || | ||| ||||
Sbjct 192 CAAGCGCGCCTGATGTCGCAGGCCTTGCGTAAACTGACTGGTAACAT--CAAGCGTACCA 135
Query 68007 ACACGCTCACCCTGTGGGTGAATCAGCTGCGCGAGAAGATCGGCAACGTGGGCTACGG-- 68064
| || || | | | || ||| | || ||| |||||| | || | |||
Sbjct 134 ATACACTGGTGATCTTCATTAACCAGATCCGTATGAAAATCGGCGTCATG---TTCGGTA 78
Query 68065 -CCCGAATGAGACCACCACCGGTGGTAAGGCTCTGCGCTTCTACGCCTCGGTGCGTATGG 68123
|||| || || || ||||| || || || || ||||||||||| ||||| |||
Sbjct 77 ACCCG---GAAACAACGACCGGCGGCAACGCGCTTAAATTCTACGCCTCTGTGCGCCTGG 21
Query 68124 ATGTCCGC 68131
|| |||||
Sbjct 20 ATATCCGC 13
>seq7041
Length=1559
Score = 98.7 bits (108), Expect = 5e-16
Identities = 372/576 (65%), Gaps = 17/576 (3%)
Strand=Plus/Plus
Query 67562 GACACCATTCCCACCGGCTCGATAGCTCTGGACGCCGCTCTCGGCATCGGGGGGTATCCG 67621
||| ||||||| |||||| | | | || |||| ||| || ||||| || || ||
Sbjct 206 GACGCCATTCCAACCGGCGCTCTGTCACTTGACGTCGCCCTTGGCATTGGTGGCCTGCCC 265
Query 67622 AGGGGCCGGGTAGTGGAGATCTACGGTCCTGAGTCTTCAGGGAAGTCAACGTTGTGCCTC 67681
| ||||| || | || | | ||| |||||| || || |||| | ||
Sbjct 266 CGCGGCCGTGTCATTGAAGTTTTCGGCGTAGAGTCTGGCGGTAAAACAACCATCACGCTT 325
Query 67682 CACGCGGTGGCCAATGCCCAGAAGGCCGGT-GGCAACGCCGCCTACATCGACGCCGAACA 67740
||||| || ||| | ||||| | | | || || | |||||| | ||||||| |||||
Sbjct 326 CACGCTGTTGCCGAAGCCCA-ACGTCAGGGCGGTATCGCCGCGTTTATCGACGTAGAACA 384
Query 67741 TTCTCTCGACCCTGAGTACGCCGCGGCGCTCGGGGTGGATGTCGACAATCTCGTGGTTGT 67800
| ||||| ||||| ||||| ||| | || || ||| | ||| || ||||
Sbjct 385 CGCCCTCGATCCTGAATACGCTAAAGCGATTGGCGTCGATATTGACTCCCTGCTGGTCTC 444
Query 67801 GCAGCCAGACACTGGCGAGCAGGCCCTGGAGATCGTTGACCTTCTCGTCAAGTCTGGCGA 67860
||||| ||| || || | || || || ||| | || | || | || |
Sbjct 445 TCAGCCCAGCACCGGTGAAGAAGCGCTAGAAATCATGGAACAGCTGATTCGCAGCGGTGC 504
Query 67861 GGTTTCCATCATCGTTGTGGACTCTGTGGCGGCCCTGGTGCCGCGGGCGGAGCTCGAAGG 67920
|| |||||||||| ||||||| || || || || || | || | |||||
Sbjct 505 TGTCGACATCATCGTTCTGGACTCGGTTGCCGCTCTTGTCACCAAAAACGAAATTGAAGG 564
Query 67921 GGACATCGGGGACTCGCACGTCGGCCTGCATGCCCGCCTGATGTCTCAGGCCATGCGCAA 67980
|| || || || | ||||||||| |||| |||||| ||||||||||||| |||| ||
Sbjct 565 CGAAATGGGTGATACCCACGTCGGCTTGCAGGCCCGCTTGATGTCTCAGGCTCTGCGTAA 624
Query 67981 GCT--GACCGG-CACGATTGCCAGCACCAACACGCTCACCCTGTGGGTGAATCAGCTGCG 68037
|| ||||| |||| ||| || ||||||| || | | || || ||||||||
Sbjct 625 ACTCACACCGGTCACG---GCCCGCTCCAACACTGTCGTAATCTTCGTCAACCAGCTGCG 681
Query 68038 CGAGAAGATCGGC---AACGTGGGCTACGGCCCGAATGAGACCACCACCGGTGGTAAGGC 68094
|| || ||||| | | ||| || |||||| |||||| | |||||| ||
Sbjct 682 TGAAAAAGTCGGCGTGATGTTCGGCAAC--CCCGAA----ACCACCCCAGGTGGTCGCGC 735
Query 68095 TCTGCGCTTCTACGCCTCGGTGCGTATGGATGTCCG 68130
||||| ||||| | || || ||| | || || ||
Sbjct 736 GCTGCGTTTCTATTCTTCTGTCCGTCTTGAAGTACG 771
>seq304
Length=36179
Score = 93.3 bits (102), Expect = 2e-14
Identities = 134/189 (71%), Gaps = 0/189 (0%)
Strand=Plus/Plus
Query 67801 GCAGCCAGACACTGGCGAGCAGGCCCTGGAGATCGTTGACCTTCTCGTCAAGTCTGGCGA 67860
|||||| ||| |||| || | || |||||||||| |||| || ||| ||| || |
Sbjct 15249 GCAGCCCGACTCTGGAGAAGAAGCGCTGGAGATCGCTGACACACTGATCAGGTCGGGAGC 15308
Query 67861 GGTTTCCATCATCGTTGTGGACTCTGTGGCGGCCCTGGTGCCGCGGGCGGAGCTCGAAGG 67920
|| | | |||| | ||| ||| || ||||| ||||| || || ||||| |||||
Sbjct 15309 AGTCGACCTTGTCGTGCTAGACAGTGTAGCTGCCCTCGTGCCCCGAGCAGAGCTGGAAGG 15368
Query 67921 GGACATCGGGGACTCGCACGTCGGCCTGCATGCCCGCCTGATGTCTCAGGCCATGCGCAA 67980
||| || || ||| ||| | | ||||| || ||||| ||| ||| || |||||||
Sbjct 15369 GGAAATGGGAGACCAGCAAATTGCTCTGCAGGCACGCCTAATGAGTCAAGCTCTGCGCAA 15428
Query 67981 GCTGACCGG 67989
|||||| ||
Sbjct 15429 GCTGACTGG 15437
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 247413151137888
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |