Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414525.1_2020 15-10-27] 12,086 sequences; 74,456,230 total letters Query= NC_022096.1 Length=258139 Score E Sequences producing significant alignments: (Bits) Value seq11031 322 8e-83 seq2394 185 1e-41 >seq11031 Length=1032 Score = 322 bits (356), Expect = 8e-83 Identities = 343/447 (77%), Gaps = 12/447 (3%) Strand=Plus/Plus Query 35453 GGTCACACCCGTCTGGCCCTGGTATTTACCGCCGCGATCCTTGTACGAGATTTCGCAGTC 35512 ||||||||| |||||||||||||| || || ||||| |||||||||||| ||||||| | Sbjct 431 GGTCACACCGGTCTGGCCCTGGTACTTGCCACCGCGGTCCTTGTACGAGGTTTCGCACAC 490 Query 35513 CTCGTCACTCTCGAAAAACAGCATCTGCGCCACACCTTCGTTCGCGTACACACGCGCCGG 35572 ||||| | |||||||| |||||||||||| |||||||| || || | |||||||| Sbjct 491 TTCGTCGGATTGGAAAAACAACATCTGCGCCACGCCTTCGTTGGCATAGATGCGCGCCGG 550 Query 35573 CAGGTTGGTAGTGTTGCTGAACTCCAGAGTCACATGACCTTCCCACTCAGGTTCCAGCGG 35632 ||| || ||||||||||| ||||| ||||| || ||||||||||| || |||||||| Sbjct 551 CAGCGGCGTGGTGTTGCTGAATTCCAGGGTCACGTGGCCTTCCCACTCCGGCTCCAGCGG 610 Query 35633 CGTCACGTTGACGATGATACCACAGCGCGCGTAGGTGCTCTTACCCAAACACACCACGAG 35692 || |||||||||||||| || |||||||||||||||||||| |||| |||||||| | Sbjct 611 GGTGACGTTGACGATGATGCCGCAGCGCGCGTAGGTGCTCTTGCCCAGGCACACCACCA- 669 Query 35693 GACG--TTGCGCGGAATGCGGAAGTATTCGACCGTGCGTGCCAGAGCGAAGCTGTTCGGC 35750 ||| | |||||| |||||||| ||||| |||||||||||||| || || ||||||||| Sbjct 670 -ACGTATCGCGCGGGATGCGGAAATATTCCACCGTGCGTGCCAGCGCAAAACTGTTCGGC 728 Query 35751 GGAATCAGGATGCTGTCAGCC--TTAACCGGCTGC--AGGCACTTGGGATCGAAGTTCTT 35806 || || ||||| | || || || | | | || | |||| ||||| | ||| Sbjct 729 GGGAT---GATGCAGACATCCGATTCGACATCGACAAAGCTGCCTGGG-TCGAAATGCTT 784 Query 35807 CGGATCAACCACTGCGCTGTTGATGTTGGTGAAGACTTCCCACTCATCGGCAGCACGCAC 35866 || || || | | ||||||||||||||| | | |||| || || | ||| | Sbjct 785 GGGGTCGACAATGGTCGAGTTGATGTTGGTGAAAATCTTGAACTCGTCCGCCACCCGCGC 844 Query 35867 GTCATAACCATACGACGAGTTGCCGTA 35893 |||||| ||||| || || |||||| Sbjct 845 GTCATAGCCATAGGAGGACAGGCCGTA 871 >seq2394 Length=6285 Score = 185 bits (204), Expect = 1e-41 Identities = 316/452 (70%), Gaps = 15/452 (3%) Strand=Plus/Minus Query 35454 GTCACACCCGTCTGGCCCTGGTATTTACCGCCGCGATCCTTGTACGAGATTTCGCAGTCC 35513 |||||||| ||||||||| |||||||| || || || || || | |||||||| | Sbjct 4259 GTCACACCGACCTGGCCCTGATATTTACCACCACGGTCTTTATAGCTGGTTTCGCAGACT 4200 Query 35514 TCGTCACTCTCGAAAAACAGCATCTGCGCCACACCTTCGTTCGCGTACACACGCGCCGGC 35573 || || || || ||||||| || || ||||| || || | || ||| Sbjct 4199 TCATCTGATTCAAAGAACAGCACTTGGGCGCAGCCTTCACCGGCATAAATCTTGGCTGGC 4140 Query 35574 AGGTTGGTAGTGTTGCTGAACTCCAGAGTCACATGACCTTCCCACTCAGGTTCCAGCGGC 35633 || ||||| |||||||||||||| || |||| ||||||||||||||||| | ||| Sbjct 4139 AGTGGTGTAGTATTGCTGAACTCCAGTGTGACATAGCCTTCCCACTCAGGTTCAAATGGC 4080 Query 35634 GTCACGTTGACGATGATACCACAGCGCGCGTAGGTGCTCTTACCCAAACACACCACGAGG 35693 || || ||||||||||| || || ||||| || ||| ||||||| || | ||| Sbjct 4079 GTGACATTGACGATGATGCCGCAACGCGCATAAGTGGATTTACCCAGGCAAATAGTGAGC 4020 Query 35694 ACGTTGCGCGGAATGCGGAAGTATTCGACCGTGCGTGCCAGAGCGAAGCTGTTCGGCGGA 35753 || ||| ||||||||||| ||||| |||||||| |||| ||||| ||| |||||| Sbjct 4019 ACCGAGCGGGGAATGCGGAAATATTCAACCGTGCGCGCCAATGCGAAAGAGTTGGGCGGA 3960 Query 35754 ATCAGGATGCTGTCAGCCTTAACCGG---CTGCAGGCACTTG-----GGATCGAAGTTCT 35805 ||| | || | |||||| |||| || | | || || || ||||| | | Sbjct 3959 ATC---ACGCAAT-AGCCTTTGCCGGAGACTTC-GACAAATGATTGCGGGTCGAACTGTT 3905 Query 35806 TCGGATCAACCACTGCGCTGTTGATGTTGGTGAAGACTTCCCACTCATCGGCAGCA-CGC 35864 |||| || || | | ||||||||| |||||||| || | || ||||| ||| || Sbjct 3904 TCGGGTCGACAATGGTGCTGTTGATATTGGTGAACACACGGAATTCGTCGGC-GCAGCGG 3846 Query 35865 ACGTCATAACCATACGACGAGTTGCCGTACGA 35896 | || ||||||||||| ||| | || || || Sbjct 3845 ATATCGTAACCATACGAAGAGGTACCATAAGA 3814 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 825792024619440