Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414525.1_2020 15-10-27] 12,086 sequences; 74,456,230 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq119 188 1e-41 seq732 176 7e-38 seq66 141 1e-27 seq317 136 6e-26 seq11831 113 7e-19 seq75 102 1e-15 seq302 89.7 8e-12 >seq119 Length=53999 Score = 188 bits (208), Expect = 1e-41 Identities = 342/498 (69%), Gaps = 7/498 (1%) Strand=Plus/Minus Query 2018901 GCCGACTTTGGCCTCCCGTGGATCGAAAAGTACCGCCCGACAGTGCTCGACGACATCGTG 2018960 |||||||||| |||||| | ||||||||||| || || | | |||| ||||| Sbjct 48316 GCCGACTTTGAAGCGCCGTGGGTGGAAAAGTACCGTCCACGCGTCTTGGCCGACGTCGTG 48257 Query 2018961 GGCAACGAGCACGCCGTTGCCTACCTCAAGGCGCTGGCCGCCGACGGCAACATGCCCAAC 2019020 |||||| || | | || ||| |||| |||| || |||||||||| ||||| Sbjct 48256 GGCAACCGCAACACGATCGCGAGTCTCCAGGCCATGGCGCGCGCCGGCAACATGACCAAC 48197 Query 2019021 CTCTTGCTGGCGGGCCCGCCCGGCACGGGCAAGACCACGAGCATCGCGTGCCTGGCGCGC 2019080 | | || || || ||||| || ||||||||||||||||| ||| ||| || |||| | Sbjct 48196 TTGATCCTCGCCGGGCCGCCGGGAACGGGCAAGACCACGAGTATCTTGTGTCTCGCGCAC 48137 Query 2019081 GTGCTCTTGGGCGCGGC---CGCCGACGAGGCCGTGCTCGAACTCAATGCGTCAGACGAG 2019137 | |||||| ||| || | | | | |||||||||| || || || ||||| |||||| Sbjct 48136 GAGCTCTTAGGCCCGACGTATGTCAAACAGGCCGTGCTGGAGCTGAACGCGTCGGACGAG 48077 Query 2019138 CGCGGCGTGGACGTCGTGCGTAGAATCATCAAG--CATCACGCTTCGAAAAGAATCGACC 2019195 || || | ||| || || | | |||||| || ||| | |||| || | Sbjct 48076 CGTGGGATCGACACGGTCCGGACGAAGATCAAGATGTTCGCGCAGCAGAAAGTGACG--C 48019 Query 2019196 TGCCGCCCGGCCGCCACAAGGTGATCATCCTCGATGAGGCCGACTGCCTTACGTCGGCGG 2019255 | ||||| || ||||||||| | | || ||||| ||||| ||| | | ||| | || | Sbjct 48018 TCCCGCCAGGGCGCCACAAGCTCGTGATTCTCGACGAGGCGGACGCCATGACGGCTGCAG 47959 Query 2019256 CCCAGCAGGCCCTCCGATCGACCATGGAAAAGTACACCAACACGACGCGGTTTGCGCTGG 2019315 | |||||||| || ||| ||| ||||| | | | || ||||| || || || | Sbjct 47958 CTCAGCAGGCACTTCGACGGACGATGGAGCTCTTCTCTGCTACCACGCGCTTCGCTCTCG 47899 Query 2019316 CCTGCAACACGTCGTCGATGGTCATCGAAGCCCTCCAGAGCCGTTGCGCCATCTTGCGCT 2019375 | ||||||| ||| ||| ||||| || || | ||||| || || ||||| |||||| Sbjct 47898 CGTGCAACAACTCGACGAAAGTCATTGAGCCCATTCAGAGTCGCTGTGCCATGCTGCGCT 47839 Query 2019376 TTGCGCGCCTCACCGACG 2019393 | |||| || | |||| Sbjct 47838 TCACGCGGCTGTCGGACG 47821 >seq732 Length=22061 Score = 176 bits (194), Expect = 7e-38 Identities = 235/326 (72%), Gaps = 3/326 (1%) Strand=Plus/Plus Query 794341 CCTTCGTCGCGACTGATCAATTCGTTGCTAAAGCAGAGGCCGGGCATGAGGCCGCGCTTC 794400 || || || ||||| || | ||||| |||| |||||| |||||||| ||||||||| Sbjct 8984 CCCTCATCTCGACTAATGAGCTCGTTCGAGAAGCTGAGGCCAGGCATGAGACCGCGCTTC 9043 Query 794401 TTGAGCCAAAAGATGGCACAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAAG 794460 || ||||||||||| | ||||| ||||||||| || ||||| ||||| | |||||| Sbjct 9044 TTCAGCCAAAAGATCGAGCAGAACGAGCCCGAGAAGAAAATGCCTTCGACCGAGGCAAAT 9103 Query 794461 CCGACGAGCCGCTCGGCAAAAGTGTCCAGGCCCTCTTTGTTGATCCACTTCATCGCCCAC 794520 | | |||||||| || | | | | | | || | |||||| | |||||| Sbjct 9104 GCCAGCAGCCGCTCCGCGTACGAAGATA---CTTGTGGGTCGCACCACTTGAGCGCCCAA 9160 Query 794521 TCTGCCTTTTTCCTCACCGAGGGCACCGTGTCGATGGCGCGAAAGAGGTGGTCCTTCTCG 794580 | || || || | || | || | || || || ||||| | ||||| |||||||| Sbjct 9161 TTGGCTTTCTTTCGAACACACGGGATGGTCTCAATCGCGCGCAGAAGGTGATCCTTCTCC 9220 Query 794581 ACCGGGTCCTTGACGTAGGTGTCGATGAGGAGCGAGTAGGTCTCTGAGTGGATGTTTTCG 794640 || || || | ||| ||||| ||||| ||||| ||| || |||||||||||||| Sbjct 9221 GTCGCCTCTTTAATGTACGTGTCAATGAGCAGCGAATAGACTTCCGAGTGGATGTTTTCA 9280 Query 794641 ATGGCGATCTGGAAGCCATAAAAGCA 794666 || ||||||||||||||||||||||| Sbjct 9281 ATCGCGATCTGGAAGCCATAAAAGCA 9306 Score = 172 bits (190), Expect = 9e-37 Identities = 229/313 (73%), Gaps = 4/313 (1%) Strand=Plus/Plus Query 793893 ACGCCCGCCTTGGCATACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGC 793952 || || ||||||| ||||||||||| ||| |||||||||||| |||||||||| ||| Sbjct 8663 ACACCAGCCTTGGAGTACTCGCCCACACGCTTCTCGAAAAAGTTCGTCTTGCCCTGAAGC 8722 Query 793953 GAGATCAACTCCATCCACGGGAACGGGTTGGCCGTCAGGTAGTGCTTCTCGCAC-CCGAG 794011 ||||||| |||||||| || ||||| | || | |||| ||| ||||| Sbjct 8723 GAGATCATGTCCATCCAGTCAAATGGGTTCTTTGCATGGAAAATCTTCGA-CACGCCGAG 8781 Query 794012 CGACGCAAGCAGGCGGTCGGCGACGAATTCAATGTACTGGCACATGAGGGCGGCGTTCAT 794071 ||| | ||||||||| || || || |||||||||||||||||||| || | |||||| Sbjct 8782 CGAGTACAACAGGCGGTCCGCTACAAACTCAATGTACTGGCACATGAGCGCCGAGTTCAT 8841 Query 794072 GCCGATGAGCGCCACGGGCAGCGACTCGCTGACAAACTCTTTCTCGATCTCGACGGCCTC 794131 ||| || ||| | ||||||||||| || | |||||||| | ||||||| || || || Sbjct 8842 GCCAATCAGCTCAACGGGCAGCGAGTCCCGCACAAACTCGTGCTCGATCGTCACTGCGTC 8901 Query 794132 GATGATGATCTGCCTGGGCAC-GTCGGACGACGGCTTGTCGACGAGCATCGTGTAGAGCA 794190 | |||||| | ||| | | ||| | | |||||| || ||| | | ||| | | Sbjct 8902 GCGAATGATC-GTGTGGACGCGGTCCTCGGGCAGCTTGTTCACTAGCTTGGAGTACATGA 8960 Query 794191 GGCAGGCAAAGTC 794203 |||| |||||||| Sbjct 8961 GGCACGCAAAGTC 8973 Score = 131 bits (144), Expect = 3e-24 Identities = 192/266 (72%), Gaps = 12/266 (5%) Strand=Plus/Plus Query 796140 AAAACACCTGGCCTCGGGTACTTGGACCTCCTTCATGAAGCGGCCGGCCAGGTTCTCAGC 796199 ||| |||| || || || ||||| || || || | ||| |||||| ||||| Sbjct 9301 AAAGCACCGAGCTTCCGGCACTTGCACTTCATTGCTAAAGTTCATGGCCAGATTCTCGTT 9360 Query 796200 CACGATGCCGTCGCTGGCGGCGAAAAAGGCGAGGACGTGCTTGATAAAGTGACGCTCGTC 796259 ||| ||||| || ||||| || || |||||||| || |||||||||||||||||||| | Sbjct 9361 CACAATGCCATCACTGGCTGCAAAGAAGGCGAGCACATGCTTGATAAAGTGACGCTCATT 9420 Query 796260 GTCGCTGAGCGAGACCCAGTGGACCGTG---TCG-GCGCCGAGGTCGACCTCCTCGGCGG 796315 ||| |||| |||||| || || ||| || || | ||| | |||||| || | Sbjct 9421 GTCCGTGAGGTTCGCCCAGT---CCTTGAGATCGTGCACC-AAGTCTAGCTCCTCAGCAG 9476 Query 796316 TCCAAAAGGAGGCCTCGGCCTTTTTGTACATCTCCCATATCCGT--TGGTAGCGGATGGG 796373 |||| || || || || ||||| |||||||||| ||| | ||| || | |||| || Sbjct 9477 TCCAGAACGAAGCTTCCGCCTTCTTGTACATCTGCCACA--CGTCGTGCTCTTGGATCGG 9534 Query 796374 GAACAGAACAAAGCGATTGGGGTTCT 796399 || || |||||||| |||||||||| Sbjct 9535 AAAGAGCACAAAGCGGTTGGGGTTCT 9560 >seq66 Length=63280 Score = 141 bits (156), Expect = 1e-27 Identities = 189/261 (72%), Gaps = 4/261 (2%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 || ||||||| |||||||| || || || || ||||||||| ||||||| || || | | Sbjct 39880 TGAACTTGGTCACGGCCTTCGTGCCTTCCGACACGGCGTGCTTGGCCAGCTCACCCGGAA 39939 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTG--CGCTTGTTAGT 1485587 ||||| |||||||| ||||||||||| ||| | ||| | || | |||||| Sbjct 39940 GCATCAGACGCACGGCCGTCTGGATCTCACGGCT--CGACAGCGTCGACTTCTTGTTGTA 39997 Query 1485588 GCGCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTT 1485647 ||||| || ||||||||| | | ||||| |||| ||||| |||| |||||||| Sbjct 39998 GCGCGAGAGCTTGCCGGCCTCCGAAGCAATGCGCTCGAAAATGTCATTGATGAACGAGTT 40057 Query 1485648 CATGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTT 1485707 |||||||||||| ||| ||||||| || |||||||| || |||||||| Sbjct 40058 CATGATCGACATACCGCGCTTGCTGATGCCCGTCTCCGGGTGCACTTGACGCAGCACCTT 40117 Query 1485708 GTAAACAAAGGACGAGTACGA 1485728 ||| | | | ||||||||| Sbjct 40118 GTAGATGTACGTCGAGTACGA 40138 >seq317 Length=35303 Score = 136 bits (150), Expect = 6e-26 Identities = 188/261 (72%), Gaps = 4/261 (2%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 || ||||||| || ||||| || || || || ||||||||| ||||||| || || | | Sbjct 11115 TGAACTTGGTCACAGCCTTCGTGCCTTCCGACACGGCGTGCTTGGCCAGCTCCCCAGGAA 11174 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCG--CTTGTTAGT 1485587 ||||| |||||||| ||||||||||| || | ||| | || | |||||| Sbjct 11175 GCATCAGACGCACGGCCGTCTGGATCTCACGACT--CGACAGCGTCGACTTCTTGTTGTA 11232 Query 1485588 GCGCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTT 1485647 ||||| || ||| ||||| | | ||||||| |||| ||||| |||| |||||||| Sbjct 11233 GCGCGAGAGCTTGCCCGCCTCCGAGGCGATGCGCTCGAAGATGTCATTGATGAACGAGTT 11292 Query 1485648 CATGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTT 1485707 |||||||||||| ||| ||||||| || |||||||| || |||||||| Sbjct 11293 CATGATCGACATGCCGCGCTTGCTGATGCCCGTCTCCGGGTGCACTTGACGCAGCACCTT 11352 Query 1485708 GTAAACAAAGGACGAGTACGA 1485728 ||| | | | ||||||||| Sbjct 11353 GTAGATGTACGTCGAGTACGA 11373 >seq11831 Length=1328 Score = 113 bits (124), Expect = 7e-19 Identities = 184/257 (72%), Gaps = 6/257 (2%) Strand=Plus/Plus Query 118610 TGAC-CCGTTCTTGCGCACGCCGCGCATGCACACGCACATGTGGAGGCCCTCGAGCACGA 118668 |||| ||| |||| | | |||||| || || |||| ||| ||| |||| ||| | Sbjct 645 TGACGCCGCGCTTGTGGATGCCGCGGGTGGTCATGCACTCGTGCGAGCCTTCGACCACCA 704 Query 118669 CGCCGACGCCGCGCGCGCCCGTGACCTCGCTGATGCTCTCGGCGATCTGGCGCG-TGAGC 118727 ||||||||||||||| | || || ||||| || |||||||| |||| | | | Sbjct 705 CGCCGACGCCGCGCGGTTGCAGCACGTCCTGGATGCACTGAGCGATCTG-CGCGGTCATC 763 Query 118728 GCCTCCTGCACCTGGAAGCGGTCCGAG-AGCATGTCGACGATGCGCGGGATCTTGCTCAG 118786 |||||||||||||||||| || | ||| | || || | ||| | | |||||| | Sbjct 764 TTTTCCTGCACCTGGAAGCGGCGCGCGTAGC-TTTCCACCACGCGGGCCAGCTTGCTGAT 822 Query 118787 GCCGATGATCCTGCCCGCGGGCAGGTAGCCCACGTGCGCCTTGCCGATAAAGGGCAGCAG 118846 ||| | | | |||| |||||||||||| |||||| |||||||||| | ||| || Sbjct 823 GCCAACCACCTTGCCGCTGGGCAGGTAGCCGACGTGCACCTTGCCGATGATCGGCGCCAT 882 Query 118847 ATGGTGCTCGCACATGG 118863 ||||||||||| |||| Sbjct 883 GTGGTGCTCGCA-ATGG 898 >seq75 Length=61118 Score = 102 bits (112), Expect = 1e-15 Identities = 145/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 2069546 GGTCGCGAAAGTCGGGCGTCCACAGGCCGCGCGCCATCATGCGCTCGACCAGGTGGCGGT 2069605 ||| ||| | ||||||||||| | ||| | | |||| || | ||||| || Sbjct 20737 GGTTGCGGACTTCGGGCGTCCAGATGCCCAGGTCAATCAATTCCTTCATCAGGTACTTGT 20796 Query 2069606 TGACCACGGTAAAGTCGCCCGAGAGCACGCGGCGCGTGTAGATGTTGCTCGTGATGACCT 2069665 | || | ||||| ||||| | ||||||||||| |||| || || |||| || Sbjct 20797 TTACAATCGTAAACTCGCCAGCCAGCACGCGGCGGTTGTACATATTCGACGTGTACGGCT 20856 Query 2069666 CGCACGCCTCGGTGTTGCCCAGGATCTGCGACGTCGTGGCCGTGGGCATGAGCGCCACGA 2069725 | || |||| |||||||||| ||||| | ||||| ||||| ||||| ||||||||| Sbjct 20857 CAATCGACTCGTTGTTGCCCAGAATCTGGGCCGTCGAAGCCGTCGGCATTGGCGCCACGA 20916 Query 2069726 GCAGCGAGTTGCGCAGGCCGTACT 2069749 |||| |||||||| | ||| |||| Sbjct 20917 GCAGAGAGTTGCGAATGCCATACT 20940 >seq302 Length=36192 Score = 89.7 bits (98), Expect = 8e-12 Identities = 139/196 (71%), Gaps = 2/196 (1%) Strand=Plus/Minus Query 118805 GGGCAGGTAGCCCACGTGCGCCTTGCCGATAAAGGGCAGCAGATGGTGCTCGCACATGGA 118864 ||| | |||||| | |||| ||||||| | || || | || ||||||||| |||||||| Sbjct 29893 GGGGATGTAGCCAATGTGCACCTTGCCCGTGAACGGGACCATATGGTGCTCACACATGGA 29834 Query 118865 GAAAAAGTCAATGTCGCGCACGGTCACCATCTCGCCCGACGTC-TCGGCAAAGAGGGCGT 118923 | | | ||||||||| ||||| ||||||||||| | ||| || |||| | ||| | Sbjct 29833 GTACAGGTCAATGTCTCGCACAATCACCATCTCG-TCATGGTCTTCTTCAAAAACGGCTT 29775 Query 118924 CGCCGACGGCCTCGGCCAGGGTCAGGCGGTGGCCGCGCGTGCGCTCCACCATGGCCTTGG 118983 || | |||| || | | || ||| || || ||| | || || ||||||| Sbjct 29774 CGTTCAGCACCTCAGCTAAGCTCTGGCCGTACCCCTTGGTGTTATACAGCAACGCCTTGG 29715 Query 118984 CCACGCGCATGGGCGT 118999 ||| ||||||||||| Sbjct 29714 CCATCCGCATGGGCGT 29699 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7914960757055754