Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414525.1_2020
15-10-27] 12,086 sequences; 74,456,230 total letters
Query= NC_022098.1
Length=2473870
Score E
Sequences producing significant alignments: (Bits) Value
seq119 188 1e-41
seq732 176 7e-38
seq66 141 1e-27
seq317 136 6e-26
seq11831 113 7e-19
seq75 102 1e-15
seq302 89.7 8e-12
>seq119
Length=53999
Score = 188 bits (208), Expect = 1e-41
Identities = 342/498 (69%), Gaps = 7/498 (1%)
Strand=Plus/Minus
Query 2018901 GCCGACTTTGGCCTCCCGTGGATCGAAAAGTACCGCCCGACAGTGCTCGACGACATCGTG 2018960
|||||||||| |||||| | ||||||||||| || || | | |||| |||||
Sbjct 48316 GCCGACTTTGAAGCGCCGTGGGTGGAAAAGTACCGTCCACGCGTCTTGGCCGACGTCGTG 48257
Query 2018961 GGCAACGAGCACGCCGTTGCCTACCTCAAGGCGCTGGCCGCCGACGGCAACATGCCCAAC 2019020
|||||| || | | || ||| |||| |||| || |||||||||| |||||
Sbjct 48256 GGCAACCGCAACACGATCGCGAGTCTCCAGGCCATGGCGCGCGCCGGCAACATGACCAAC 48197
Query 2019021 CTCTTGCTGGCGGGCCCGCCCGGCACGGGCAAGACCACGAGCATCGCGTGCCTGGCGCGC 2019080
| | || || || ||||| || ||||||||||||||||| ||| ||| || |||| |
Sbjct 48196 TTGATCCTCGCCGGGCCGCCGGGAACGGGCAAGACCACGAGTATCTTGTGTCTCGCGCAC 48137
Query 2019081 GTGCTCTTGGGCGCGGC---CGCCGACGAGGCCGTGCTCGAACTCAATGCGTCAGACGAG 2019137
| |||||| ||| || | | | | |||||||||| || || || ||||| ||||||
Sbjct 48136 GAGCTCTTAGGCCCGACGTATGTCAAACAGGCCGTGCTGGAGCTGAACGCGTCGGACGAG 48077
Query 2019138 CGCGGCGTGGACGTCGTGCGTAGAATCATCAAG--CATCACGCTTCGAAAAGAATCGACC 2019195
|| || | ||| || || | | |||||| || ||| | |||| || |
Sbjct 48076 CGTGGGATCGACACGGTCCGGACGAAGATCAAGATGTTCGCGCAGCAGAAAGTGACG--C 48019
Query 2019196 TGCCGCCCGGCCGCCACAAGGTGATCATCCTCGATGAGGCCGACTGCCTTACGTCGGCGG 2019255
| ||||| || ||||||||| | | || ||||| ||||| ||| | | ||| | || |
Sbjct 48018 TCCCGCCAGGGCGCCACAAGCTCGTGATTCTCGACGAGGCGGACGCCATGACGGCTGCAG 47959
Query 2019256 CCCAGCAGGCCCTCCGATCGACCATGGAAAAGTACACCAACACGACGCGGTTTGCGCTGG 2019315
| |||||||| || ||| ||| ||||| | | | || ||||| || || || |
Sbjct 47958 CTCAGCAGGCACTTCGACGGACGATGGAGCTCTTCTCTGCTACCACGCGCTTCGCTCTCG 47899
Query 2019316 CCTGCAACACGTCGTCGATGGTCATCGAAGCCCTCCAGAGCCGTTGCGCCATCTTGCGCT 2019375
| ||||||| ||| ||| ||||| || || | ||||| || || ||||| ||||||
Sbjct 47898 CGTGCAACAACTCGACGAAAGTCATTGAGCCCATTCAGAGTCGCTGTGCCATGCTGCGCT 47839
Query 2019376 TTGCGCGCCTCACCGACG 2019393
| |||| || | ||||
Sbjct 47838 TCACGCGGCTGTCGGACG 47821
>seq732
Length=22061
Score = 176 bits (194), Expect = 7e-38
Identities = 235/326 (72%), Gaps = 3/326 (1%)
Strand=Plus/Plus
Query 794341 CCTTCGTCGCGACTGATCAATTCGTTGCTAAAGCAGAGGCCGGGCATGAGGCCGCGCTTC 794400
|| || || ||||| || | ||||| |||| |||||| |||||||| |||||||||
Sbjct 8984 CCCTCATCTCGACTAATGAGCTCGTTCGAGAAGCTGAGGCCAGGCATGAGACCGCGCTTC 9043
Query 794401 TTGAGCCAAAAGATGGCACAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAAG 794460
|| ||||||||||| | ||||| ||||||||| || ||||| ||||| | ||||||
Sbjct 9044 TTCAGCCAAAAGATCGAGCAGAACGAGCCCGAGAAGAAAATGCCTTCGACCGAGGCAAAT 9103
Query 794461 CCGACGAGCCGCTCGGCAAAAGTGTCCAGGCCCTCTTTGTTGATCCACTTCATCGCCCAC 794520
| | |||||||| || | | | | | | || | |||||| | ||||||
Sbjct 9104 GCCAGCAGCCGCTCCGCGTACGAAGATA---CTTGTGGGTCGCACCACTTGAGCGCCCAA 9160
Query 794521 TCTGCCTTTTTCCTCACCGAGGGCACCGTGTCGATGGCGCGAAAGAGGTGGTCCTTCTCG 794580
| || || || | || | || | || || || ||||| | ||||| ||||||||
Sbjct 9161 TTGGCTTTCTTTCGAACACACGGGATGGTCTCAATCGCGCGCAGAAGGTGATCCTTCTCC 9220
Query 794581 ACCGGGTCCTTGACGTAGGTGTCGATGAGGAGCGAGTAGGTCTCTGAGTGGATGTTTTCG 794640
|| || || | ||| ||||| ||||| ||||| ||| || ||||||||||||||
Sbjct 9221 GTCGCCTCTTTAATGTACGTGTCAATGAGCAGCGAATAGACTTCCGAGTGGATGTTTTCA 9280
Query 794641 ATGGCGATCTGGAAGCCATAAAAGCA 794666
|| |||||||||||||||||||||||
Sbjct 9281 ATCGCGATCTGGAAGCCATAAAAGCA 9306
Score = 172 bits (190), Expect = 9e-37
Identities = 229/313 (73%), Gaps = 4/313 (1%)
Strand=Plus/Plus
Query 793893 ACGCCCGCCTTGGCATACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGC 793952
|| || ||||||| ||||||||||| ||| |||||||||||| |||||||||| |||
Sbjct 8663 ACACCAGCCTTGGAGTACTCGCCCACACGCTTCTCGAAAAAGTTCGTCTTGCCCTGAAGC 8722
Query 793953 GAGATCAACTCCATCCACGGGAACGGGTTGGCCGTCAGGTAGTGCTTCTCGCAC-CCGAG 794011
||||||| |||||||| || ||||| | || | |||| ||| |||||
Sbjct 8723 GAGATCATGTCCATCCAGTCAAATGGGTTCTTTGCATGGAAAATCTTCGA-CACGCCGAG 8781
Query 794012 CGACGCAAGCAGGCGGTCGGCGACGAATTCAATGTACTGGCACATGAGGGCGGCGTTCAT 794071
||| | ||||||||| || || || |||||||||||||||||||| || | ||||||
Sbjct 8782 CGAGTACAACAGGCGGTCCGCTACAAACTCAATGTACTGGCACATGAGCGCCGAGTTCAT 8841
Query 794072 GCCGATGAGCGCCACGGGCAGCGACTCGCTGACAAACTCTTTCTCGATCTCGACGGCCTC 794131
||| || ||| | ||||||||||| || | |||||||| | ||||||| || || ||
Sbjct 8842 GCCAATCAGCTCAACGGGCAGCGAGTCCCGCACAAACTCGTGCTCGATCGTCACTGCGTC 8901
Query 794132 GATGATGATCTGCCTGGGCAC-GTCGGACGACGGCTTGTCGACGAGCATCGTGTAGAGCA 794190
| |||||| | ||| | | ||| | | |||||| || ||| | | ||| | |
Sbjct 8902 GCGAATGATC-GTGTGGACGCGGTCCTCGGGCAGCTTGTTCACTAGCTTGGAGTACATGA 8960
Query 794191 GGCAGGCAAAGTC 794203
|||| ||||||||
Sbjct 8961 GGCACGCAAAGTC 8973
Score = 131 bits (144), Expect = 3e-24
Identities = 192/266 (72%), Gaps = 12/266 (5%)
Strand=Plus/Plus
Query 796140 AAAACACCTGGCCTCGGGTACTTGGACCTCCTTCATGAAGCGGCCGGCCAGGTTCTCAGC 796199
||| |||| || || || ||||| || || || | ||| |||||| |||||
Sbjct 9301 AAAGCACCGAGCTTCCGGCACTTGCACTTCATTGCTAAAGTTCATGGCCAGATTCTCGTT 9360
Query 796200 CACGATGCCGTCGCTGGCGGCGAAAAAGGCGAGGACGTGCTTGATAAAGTGACGCTCGTC 796259
||| ||||| || ||||| || || |||||||| || |||||||||||||||||||| |
Sbjct 9361 CACAATGCCATCACTGGCTGCAAAGAAGGCGAGCACATGCTTGATAAAGTGACGCTCATT 9420
Query 796260 GTCGCTGAGCGAGACCCAGTGGACCGTG---TCG-GCGCCGAGGTCGACCTCCTCGGCGG 796315
||| |||| |||||| || || ||| || || | ||| | |||||| || |
Sbjct 9421 GTCCGTGAGGTTCGCCCAGT---CCTTGAGATCGTGCACC-AAGTCTAGCTCCTCAGCAG 9476
Query 796316 TCCAAAAGGAGGCCTCGGCCTTTTTGTACATCTCCCATATCCGT--TGGTAGCGGATGGG 796373
|||| || || || || ||||| |||||||||| ||| | ||| || | |||| ||
Sbjct 9477 TCCAGAACGAAGCTTCCGCCTTCTTGTACATCTGCCACA--CGTCGTGCTCTTGGATCGG 9534
Query 796374 GAACAGAACAAAGCGATTGGGGTTCT 796399
|| || |||||||| ||||||||||
Sbjct 9535 AAAGAGCACAAAGCGGTTGGGGTTCT 9560
>seq66
Length=63280
Score = 141 bits (156), Expect = 1e-27
Identities = 189/261 (72%), Gaps = 4/261 (2%)
Strand=Plus/Plus
Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529
|| ||||||| |||||||| || || || || ||||||||| ||||||| || || | |
Sbjct 39880 TGAACTTGGTCACGGCCTTCGTGCCTTCCGACACGGCGTGCTTGGCCAGCTCACCCGGAA 39939
Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTG--CGCTTGTTAGT 1485587
||||| |||||||| ||||||||||| ||| | ||| | || | ||||||
Sbjct 39940 GCATCAGACGCACGGCCGTCTGGATCTCACGGCT--CGACAGCGTCGACTTCTTGTTGTA 39997
Query 1485588 GCGCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTT 1485647
||||| || ||||||||| | | ||||| |||| ||||| |||| ||||||||
Sbjct 39998 GCGCGAGAGCTTGCCGGCCTCCGAAGCAATGCGCTCGAAAATGTCATTGATGAACGAGTT 40057
Query 1485648 CATGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTT 1485707
|||||||||||| ||| ||||||| || |||||||| || ||||||||
Sbjct 40058 CATGATCGACATACCGCGCTTGCTGATGCCCGTCTCCGGGTGCACTTGACGCAGCACCTT 40117
Query 1485708 GTAAACAAAGGACGAGTACGA 1485728
||| | | | |||||||||
Sbjct 40118 GTAGATGTACGTCGAGTACGA 40138
>seq317
Length=35303
Score = 136 bits (150), Expect = 6e-26
Identities = 188/261 (72%), Gaps = 4/261 (2%)
Strand=Plus/Plus
Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529
|| ||||||| || ||||| || || || || ||||||||| ||||||| || || | |
Sbjct 11115 TGAACTTGGTCACAGCCTTCGTGCCTTCCGACACGGCGTGCTTGGCCAGCTCCCCAGGAA 11174
Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCG--CTTGTTAGT 1485587
||||| |||||||| ||||||||||| || | ||| | || | ||||||
Sbjct 11175 GCATCAGACGCACGGCCGTCTGGATCTCACGACT--CGACAGCGTCGACTTCTTGTTGTA 11232
Query 1485588 GCGCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTT 1485647
||||| || ||| ||||| | | ||||||| |||| ||||| |||| ||||||||
Sbjct 11233 GCGCGAGAGCTTGCCCGCCTCCGAGGCGATGCGCTCGAAGATGTCATTGATGAACGAGTT 11292
Query 1485648 CATGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTT 1485707
|||||||||||| ||| ||||||| || |||||||| || ||||||||
Sbjct 11293 CATGATCGACATGCCGCGCTTGCTGATGCCCGTCTCCGGGTGCACTTGACGCAGCACCTT 11352
Query 1485708 GTAAACAAAGGACGAGTACGA 1485728
||| | | | |||||||||
Sbjct 11353 GTAGATGTACGTCGAGTACGA 11373
>seq11831
Length=1328
Score = 113 bits (124), Expect = 7e-19
Identities = 184/257 (72%), Gaps = 6/257 (2%)
Strand=Plus/Plus
Query 118610 TGAC-CCGTTCTTGCGCACGCCGCGCATGCACACGCACATGTGGAGGCCCTCGAGCACGA 118668
|||| ||| |||| | | |||||| || || |||| ||| ||| |||| ||| |
Sbjct 645 TGACGCCGCGCTTGTGGATGCCGCGGGTGGTCATGCACTCGTGCGAGCCTTCGACCACCA 704
Query 118669 CGCCGACGCCGCGCGCGCCCGTGACCTCGCTGATGCTCTCGGCGATCTGGCGCG-TGAGC 118727
||||||||||||||| | || || ||||| || |||||||| |||| | | |
Sbjct 705 CGCCGACGCCGCGCGGTTGCAGCACGTCCTGGATGCACTGAGCGATCTG-CGCGGTCATC 763
Query 118728 GCCTCCTGCACCTGGAAGCGGTCCGAG-AGCATGTCGACGATGCGCGGGATCTTGCTCAG 118786
|||||||||||||||||| || | ||| | || || | ||| | | |||||| |
Sbjct 764 TTTTCCTGCACCTGGAAGCGGCGCGCGTAGC-TTTCCACCACGCGGGCCAGCTTGCTGAT 822
Query 118787 GCCGATGATCCTGCCCGCGGGCAGGTAGCCCACGTGCGCCTTGCCGATAAAGGGCAGCAG 118846
||| | | | |||| |||||||||||| |||||| |||||||||| | ||| ||
Sbjct 823 GCCAACCACCTTGCCGCTGGGCAGGTAGCCGACGTGCACCTTGCCGATGATCGGCGCCAT 882
Query 118847 ATGGTGCTCGCACATGG 118863
||||||||||| ||||
Sbjct 883 GTGGTGCTCGCA-ATGG 898
>seq75
Length=61118
Score = 102 bits (112), Expect = 1e-15
Identities = 145/204 (71%), Gaps = 0/204 (0%)
Strand=Plus/Plus
Query 2069546 GGTCGCGAAAGTCGGGCGTCCACAGGCCGCGCGCCATCATGCGCTCGACCAGGTGGCGGT 2069605
||| ||| | ||||||||||| | ||| | | |||| || | ||||| ||
Sbjct 20737 GGTTGCGGACTTCGGGCGTCCAGATGCCCAGGTCAATCAATTCCTTCATCAGGTACTTGT 20796
Query 2069606 TGACCACGGTAAAGTCGCCCGAGAGCACGCGGCGCGTGTAGATGTTGCTCGTGATGACCT 2069665
| || | ||||| ||||| | ||||||||||| |||| || || |||| ||
Sbjct 20797 TTACAATCGTAAACTCGCCAGCCAGCACGCGGCGGTTGTACATATTCGACGTGTACGGCT 20856
Query 2069666 CGCACGCCTCGGTGTTGCCCAGGATCTGCGACGTCGTGGCCGTGGGCATGAGCGCCACGA 2069725
| || |||| |||||||||| ||||| | ||||| ||||| ||||| |||||||||
Sbjct 20857 CAATCGACTCGTTGTTGCCCAGAATCTGGGCCGTCGAAGCCGTCGGCATTGGCGCCACGA 20916
Query 2069726 GCAGCGAGTTGCGCAGGCCGTACT 2069749
|||| |||||||| | ||| ||||
Sbjct 20917 GCAGAGAGTTGCGAATGCCATACT 20940
>seq302
Length=36192
Score = 89.7 bits (98), Expect = 8e-12
Identities = 139/196 (71%), Gaps = 2/196 (1%)
Strand=Plus/Minus
Query 118805 GGGCAGGTAGCCCACGTGCGCCTTGCCGATAAAGGGCAGCAGATGGTGCTCGCACATGGA 118864
||| | |||||| | |||| ||||||| | || || | || ||||||||| ||||||||
Sbjct 29893 GGGGATGTAGCCAATGTGCACCTTGCCCGTGAACGGGACCATATGGTGCTCACACATGGA 29834
Query 118865 GAAAAAGTCAATGTCGCGCACGGTCACCATCTCGCCCGACGTC-TCGGCAAAGAGGGCGT 118923
| | | ||||||||| ||||| ||||||||||| | ||| || |||| | ||| |
Sbjct 29833 GTACAGGTCAATGTCTCGCACAATCACCATCTCG-TCATGGTCTTCTTCAAAAACGGCTT 29775
Query 118924 CGCCGACGGCCTCGGCCAGGGTCAGGCGGTGGCCGCGCGTGCGCTCCACCATGGCCTTGG 118983
|| | |||| || | | || ||| || || ||| | || || |||||||
Sbjct 29774 CGTTCAGCACCTCAGCTAAGCTCTGGCCGTACCCCTTGGTGTTATACAGCAACGCCTTGG 29715
Query 118984 CCACGCGCATGGGCGT 118999
||| |||||||||||
Sbjct 29714 CCATCCGCATGGGCGT 29699
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 7914960757055754
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