Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414525.1_2020 15-10-27] 12,086 sequences; 74,456,230 total letters Query= NC_022612.1 Length=42940 Score E Sequences producing significant alignments: (Bits) Value seq276 89.7 1e-13 >seq276 Length=79158 Score = 89.7 bits (98), Expect = 1e-13 Identities = 161/233 (69%), Gaps = 2/233 (1%) Strand=Plus/Minus Query 1022 TGGCTCCGCGATCGGGTCTGGCGGTTAAATTTTTTATCGACGTCGGGGCGGGTGTCGTTG 1081 |||| || || |||||||| ||| | || ||| |||||| || || |||||| | | Sbjct 10067 TGGCGCCTCGCTCGGGTCTTGCGCTGAAGAATTTCATCGACACTGGCGCTGGTGTCATCG 10008 Query 1082 ATAACGATTACCGCGGTCTCGTTAGCGTCCTCCTGTTTAACTTCTCGAATCACGATTTTC 1141 || ||||||||||||| ||| |||| |||||||| ||| ||||| | || ||| Sbjct 10007 ATGCCGATTACCGCGGTAACGTGGGCGTGCTCCTGTTCAACCACTCGACGGAAGACTTTG 9948 Query 1142 ATGTTCGACGTGGCGATCGCGTGGCGCAGATAATTCTGGAACGCTACGTGTCCGCAGATG 1201 || || || ||||| || |||||| | ||||| || | || || | || Sbjct 9947 CCGTCAAGCGAGGGGATCGAGTAGCGCAGCTCATTCTCGAGAGAATCGAGTACCCAAGCA 9888 Query 1202 TTCAGGAAGTGG-TTTCTTTGAATAGCACGGAGCGGGGCGCGAGCGGTTTCGG 1253 | ||||||||| | |||| || |||| || |||||||||||||| || Sbjct 9887 TCGAGGAAGTGGATGAGATTGACCAG-ACGGCTCGTGGCGCGAGCGGTTTTGG 9836 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 137266696484264