Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414525.1_2020
15-10-27] 12,086 sequences; 74,456,230 total letters
Query= NC_022612.1
Length=42940
Score E
Sequences producing significant alignments: (Bits) Value
seq276 89.7 1e-13
>seq276
Length=79158
Score = 89.7 bits (98), Expect = 1e-13
Identities = 161/233 (69%), Gaps = 2/233 (1%)
Strand=Plus/Minus
Query 1022 TGGCTCCGCGATCGGGTCTGGCGGTTAAATTTTTTATCGACGTCGGGGCGGGTGTCGTTG 1081
|||| || || |||||||| ||| | || ||| |||||| || || |||||| | |
Sbjct 10067 TGGCGCCTCGCTCGGGTCTTGCGCTGAAGAATTTCATCGACACTGGCGCTGGTGTCATCG 10008
Query 1082 ATAACGATTACCGCGGTCTCGTTAGCGTCCTCCTGTTTAACTTCTCGAATCACGATTTTC 1141
|| ||||||||||||| ||| |||| |||||||| ||| ||||| | || |||
Sbjct 10007 ATGCCGATTACCGCGGTAACGTGGGCGTGCTCCTGTTCAACCACTCGACGGAAGACTTTG 9948
Query 1142 ATGTTCGACGTGGCGATCGCGTGGCGCAGATAATTCTGGAACGCTACGTGTCCGCAGATG 1201
|| || || ||||| || |||||| | ||||| || | || || | ||
Sbjct 9947 CCGTCAAGCGAGGGGATCGAGTAGCGCAGCTCATTCTCGAGAGAATCGAGTACCCAAGCA 9888
Query 1202 TTCAGGAAGTGG-TTTCTTTGAATAGCACGGAGCGGGGCGCGAGCGGTTTCGG 1253
| ||||||||| | |||| || |||| || |||||||||||||| ||
Sbjct 9887 TCGAGGAAGTGGATGAGATTGACCAG-ACGGCTCGTGGCGCGAGCGGTTTTGG 9836
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 137266696484264
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |