Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414525.1_2020 15-10-27] 12,086 sequences; 74,456,230 total letters Query= NC_022749.1 Length=39758 Score E Sequences producing significant alignments: (Bits) Value seq6488 214 5e-51 seq2897 159 9e-35 seq8133 147 6e-31 seq9279 82.4 2e-11 >seq6488 Length=1689 Score = 214 bits (236), Expect = 5e-51 Identities = 381/548 (70%), Gaps = 10/548 (2%) Strand=Plus/Minus Query 18570 ATGAATCGCCACAGATAATCTAGACACTTCCGAGCCGCTGATAATATTGGTTTTCGTATT 18629 |||||||||| | | | |||||||||||| |||||| || ||| | | | |||| | | Sbjct 1580 ATGAATCGCCCCGGCTTATCTAGACACTTTTGAGCCGTTGGGAATGTCGCTGTTCGAACT 1521 Query 18630 CAGTTGGTGGCATA-TGATCACTC-GAACCATGCCGACGCTTACTGTTATAAAACATTTC 18687 | || | ||| | | | | || ||| || |||| ||| || |||||||| Sbjct 1520 CTACAGGGG--ATAGTCCTGCCGCCGATGAATGACGGCGCTGTGAGTTGTAGAACATTTC 1463 Query 18688 GATGTAATCAAAAATATCACCGCGAGCTTCTTCTCGCGTTCCGTAGATCTTTTTCTTTAT 18747 |||||| | || | || | | || || || || ||| | |||| | | || Sbjct 1462 GATGTAGTTGAAGACGTCCGCTCTCGCGTCATCACGGGTTGCATAGACCCGCCTGCGGAT 1403 Query 18748 CCGTTCACGTTTCAGTAGCTGGAAAAAACTTTCTGCGACTGCGTTGTCATGACAGTTACC 18807 ||||| || || || || ||||| || || || || || |||||||| || ||||| || Sbjct 1402 GCGTTCGCGCTTGAGCAGTTGGAAGAAGCTCTCGGCCACAGCGTTGTCGTGGCAGTTGCC 1343 Query 18808 GCGACGGCTCATACTGCCCTCCAGCCCGTGTGATTTCAGGAACGACTGCCACTCATAGCT 18867 || |||||||| |||| |||| ||| |||||| | ||||||||| | || Sbjct 1342 ACGCCGGCTCATGCTGCTGACCAGGTTGTGCTCGCGCAGGAAGGTCTGCCACTCGTGGCC 1283 Query 18868 TGTGTACTGACTGCCTTGATCAGAATGAACCAGCACCTGCTTTTGAGGATTACGTCGCCA 18927 ||| |||||| ||||||||| |||||||||| || | | || | || ||||| Sbjct 1282 GGTGAACTGACAGCCTTGATCGGAATGAACCATGACAGGTGCACGCGGCTGGCGGCGCCA 1223 Query 18928 CACGGCCATCAGAAGTGCATTCAGGACAATATCCTTTGTCA-TCCGGGGCTGC--ATTGA 18984 | |||||||| ||||||| ||||| | | | |||| | ||| |||| || || Sbjct 1222 TAGCGCCATCAGCAGTGCATCGAGGACCAGGCTCGT-GTCAATTCGG--CTGCCCATGGA 1166 Query 18985 CCAGCCAATAACTTTGCGCGAGAACAGGTCAACAACCACAGCCAGATACAGCCAGCCTTC 19044 |||||| | || | ||| |||||||| || || || || ||||| |||||||||||||| Sbjct 1165 CCAGCCCACTACCTGGCGTGAGAACAGATCGACCACAACCGCCAGGTACAGCCAGCCTTC 1106 Query 19045 GTGAGTCCGGATGTAGGTGATGTCCGTTACCCAACGCTCATCCGGTGCTTCCGAGTTGAA 19104 ||| || ||||||||||||||||| || |||||| || || || | ||| ||||| Sbjct 1105 GTGGGTTCGGATGTAGGTGATGTCAGTGACCCAAGACTGATTGGGCTCATCCACCTTGAA 1046 Query 19105 CTGCCGCT 19112 ||| |||| Sbjct 1045 CTGACGCT 1038 >seq2897 Length=4673 Score = 159 bits (176), Expect = 9e-35 Identities = 373/550 (68%), Gaps = 17/550 (3%) Strand=Plus/Minus Query 19265 TTGCGATAACCATAAACGCAACCCGACTCCAGCCAGAACTGCTTTATCAGCCCCGTCAGC 19324 |||||||||||||| || | ||| ||||||| |||| ||||| || || || | || Sbjct 4576 TTGCGATAACCATACACACCACCGGACTCCAACCAGCTTTGCTTGATGAGGCCAGATTGC 4517 Query 19325 CTCAGGTCAGCATGATGCCGCCGTG-AATCCGGCTGCTGAAGCCAGGCGTAAAAACCACT 19383 | | || || |||| ||| || ||| |||||| | ||||| || ||||| ||||| Sbjct 4516 CGCTGGCTAGTTTGATAA-GCCTTGGAATGCGGCTGTTTCAGCCAAGCATAAAACCCACT 4458 Query 19384 CGGATGCACATCCAGCACCCGACAAAGCAGTCGGACAGGCCAGCAAT--GGGTGTTGTCA 19441 |||||| | |||| |||| |||||| || | |||||||| | | |||||| Sbjct 4457 CGGATGAGCCTCCAACACCTAGCAAAGCCACCGTATCGGCCAGCAGTCCTGATGTTGT-- 4400 Query 19442 CGGATAAAGGCGTACCTCAGTCGGACAGCTTTGCGAAGTACGCCGCTG-TAGATTCAATA 19500 | |||||||| ||||||| | ||| |||| |||||||| ||||| | | || |||| Sbjct 4399 TGTATAAAGGCATACCTCAACCTGACTGCTTCGCGAAGTATGCCGCGGCTTTTTTTAATA 4340 Query 19501 TGTCCCGTTCGTCGGTAACCCGCTTCAGCTCTTTCTGGAGGCGTCGGATCTCAGCCTGAG 19560 | ||||| || || || || ||||| ||||| || | |||||| | | ||| ||||| Sbjct 4339 TATCCCGCTCTTCAGTGACTCGCTTGAGCTCCTTACGCAGGCGTTGCAACTCTGCCTGCT 4280 Query 19561 CGTCTGACTGGACTTTATTGGTTGAGGAATCCGGGCCATATGCCTTTAT---CCAGGCAT 19617 | ||| | ||| || || | ||| || || || ||| || |||||||| Sbjct 4279 CAGCTGTTTTTGCTTGATGCTCTGCTGCATCTGGTCCGTA---CTTGATAACCCAGGCAT 4223 Query 19618 AAAGACTGTGGGTGGTGATACCGAGACGTGTTGCCACGCTGGAAACAGAATGGCCGCGAT 19677 ||||||| | | |||| | | | | |||||| || |||| | |||| | Sbjct 4222 AAAGACTATCGACAGTGACATCCAACCTACGTGCCACTTCTGATACAGCGTATCCGCCTT 4163 Query 19678 CAACAACCTGTTTTACCGCTTCAATTTTAAACTCTTCGGGATAACGCTTACCGCTCAT-G 19736 | | || || ||| | ||||| || ||||| |||||||| ||||| ||||| Sbjct 4162 CTGTGATTTGACGGACGGCTGCTATTTTGAATTCTTCTGGATAACGTTTACCACTCATAC 4103 Query 19737 GGCACCTCTCTTTA-AGTCATCTTA-AATGACTCTGAGGTGTCTGTTAAACCTGTGGCGA 19794 |||||| ||||| | | ||| | | || |||||||| |||| ||||||| Sbjct 4102 TGCACCTTACTTTATATTGCCATTATTACGGCTTAAAGGTGTCTAGTAAATTAGTGGCGA 4043 Query 19795 TTCA-TTATT 19803 |||| ||||| Sbjct 4042 TTCAGTTATT 4033 >seq8133 Length=1357 Score = 147 bits (162), Expect = 6e-31 Identities = 282/410 (69%), Gaps = 13/410 (3%) Strand=Plus/Plus Query 18672 TGTTATAAAACATTTCGATGTAATCAAAAATATCACCGCGAGCTTCTTCTCGCGT-TC-C 18729 |||| |||||||| |||||||| | || | ||| ||||| ||||||| || | Sbjct 424 TGTTGTAAAACATCTCGATGTAGTTGAAGACATCGGACTTGGCTTC--CTCGCGTATCAC 481 Query 18730 GTAGATCTTTTTCTTTATCCGTTCACGTTTCAGTAGCTGGAAAAAACTTTCTGCGACTGC 18789 |||| | | ||| | || ||||||||||| |||||||| || ||||| || ||||| Sbjct 482 ATAGACCCGTCGCTTGGTGCGCTCACGTTTCAGGAGCTGGAAGAAGCTTTCAGCAACTGC 541 Query 18790 GTTGTCATGACAGTTACCGCGACGGCTCATACTGCCCTCCAGCCCGTGTGATTTCAGGAA 18849 |||||| || || ||||||| |||| |||| |||| ||| ||||||| |||| || Sbjct 542 GTTGTCGTGGCAATTACCGCTACGGATCATGCTGCTGACCAAGCCGTGTGCCTTCAAAAA 601 Query 18850 CGACTGCCACTCATAGCTTGTGTACTGACTGCCTTGATCAGAATGAACCAGCA--CCTGC 18907 |||||| || | || || |||| ||||||| || || || ||||||| ||||| Sbjct 602 GTCCTGCCAGTCGTGCCTGGTAAACTGTGTGCCTTGGTCGGAGTGGACCAGCAGTCCTGC 661 Query 18908 TTTTGAGGATTACGTCGCCACACGGCCATCAGAAGTGCATTCAGGACAATATCCTTTGTC 18967 | || | ||||||||| |||||||| | | ||| | || || | || | | Sbjct 662 --AGGCGGCTGACGTCGCCATACGGCCATTATCAATGCGTGTAGCACCAGGTCGGTATGC 719 Query 18968 ATCCGGGGCTGCATTGACCAGCCAATAACTTTGCGCGAGAACAGGTCAACAACCACAGCC 19027 || | ||||| | |||||| | | | | ||| | || || | ||||| ||| Sbjct 720 ATGGTCGATTGCATCGCCCAGCCCACGATCGTCCTTGAGGAAAGATCCAACACCACGGCC 779 Query 19028 AGATACAGCCAGCCTTCGTGAGTCCGGATGTAGGTGATGTCCGTTACCCA 19077 || |||| || |||| || || |||||||||||| | || ||||| Sbjct 780 AGGTACA-----CCCCCGTGCGTTCGAATGTAGGTGATGCCGGTGACCCA 824 >seq9279 Length=1204 Score = 82.4 bits (90), Expect = 2e-11 Identities = 113/158 (72%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 18920 CGTCGCCACACGGCCATCAGAAGTGCATTCAGGACAATATCCTTTGTCATCCGGGGCTGC 18979 || |||||||||||||||| | |||| || | | | ||||| | | |||| Sbjct 618 CGGCGCCACACGGCCATCATCAACGCATCGGCCACCAGTTGCGAGGTCATGCTGTCCTGC 677 Query 18980 ATTGACCAGCCAATAACTTTGCGCGAGAACAGGTCAACAACCACAGCCAGATACAGCCAG 19039 || |||||||||| | |||||| ||||||| | ||| |||| |||||||||| Sbjct 678 ATCGACCAGCCAACGATGCGACGCGAGTACAGGTCCAGCACCGCAGCGGCATACAGCCAG 737 Query 19040 CCTTCGTGAGTCCGGATGTAGGTGATGTCCGTTACCCA 19077 || ||| |||| ||||||||||| ||||| ||||| Sbjct 738 CCCTCGGCCGTCCAGATGTAGGTGAAGTCCGCCACCCA 775 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 127085757875040