Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414525.1_2020 15-10-27] 12,086 sequences; 74,456,230 total letters Query= NC_022750.1 Length=33628 Score E Sequences producing significant alignments: (Bits) Value seq6992 140 7e-29 seq6336 98.7 2e-16 >seq6992 Length=1569 Score = 140 bits (154), Expect = 7e-29 Identities = 229/322 (71%), Gaps = 11/322 (3%) Strand=Plus/Minus Query 16575 CAGCACCACCGCCACCGCGTATGCCACCGCCCGTGCGCTGGGTCTGCGTGCCAAAATCGA 16634 ||||||||| | | || |||||||| || |||||||| || ||||||||||| ||||| Sbjct 1555 CAGCACCACGACGGCGGCATATGCCACTGCGCGTGCGCTCGGCCTGCGTGCCAAGATCGA 1496 Query 16635 CCAGGAGCAGGGCTGGCATAAAACGCTGTCCAACGTCGGGGTGAACGGTGTTACCGGCAT 16694 | || ||||||||||| || | ||||||||||| ||| || || |||||||| Sbjct 1495 CACCGAACAGGGCTGGCACAAGAGCCTGTCCAACGTGCCCGTGGCTGGCGTCACCGGCAT 1436 Query 16695 CAGC--GCCTCTGTATTCTGGGATTTGCAGGAGTCCGG-CACCGATGCTGACCTGTTGAA 16751 | | | | || || |||||| ||||||| ||||| ||||||||| | | | | || Sbjct 1435 CTCCAAGGATGTGCAT--TGGGATCTGCAGGA-TCCGGCCACCGATGCCGGCATCCTCAA 1379 Query 16752 CGAGTCAGGTGTCACAACGCTGATTCGCCGT--GACGGTTTCCGCTTCTGGGGTAACCGT 16809 |||| | |||| |||||| | | ||| |||| ||||||||||| || Sbjct 1378 CGAGGGCGACATCACCACGCTGGT--GACGTTCAACGGCCAGCGCTTCTGGGGATCGCGC 1321 Query 16810 ACCTGCTCTGATGACCCGCTGTTCCTCTTTGAAAACTACACCCGCACCGCGCAGGTGCTG 16869 || ||| | || ||| ||||| ||| || | ||| |||||||||||| | ||| Sbjct 1320 ACGTGCGCGGAGGACAACATGTTCGCCTTCGAGACGGCCACGCGCACCGCGCAGATCCTG 1261 Query 16870 GCCGACACGATGGCTG-AGGCG 16890 |||||||| || || | ||||| Sbjct 1260 GCCGACACCATCGCCGAAGGCG 1239 >seq6336 Length=1727 Score = 98.7 bits (108), Expect = 2e-16 Identities = 119/162 (73%), Gaps = 0/162 (0%) Strand=Plus/Minus Query 3414 GGCGCTGTTTGCGAAAATCACCCCGACCGATGACCTTATCGCGATGAACAAGGCCGCGCA 3473 |||||||||||| | ||| ||||||| ||||| ||| | || |||||| || ||| Sbjct 371 GGCGCTGTTTGCCCAGATCGAGCCGACCGCCGACCTGATCACCATCAACAAGTCCAAGCA 312 Query 3474 GAAGGTCTATACCTCAATGGAAATTCAGCCGAACTTTGCCAATACCGGCAAATGTTATCT 3533 |||| |||| ||| || || | ||| ||| || ||||| |||||||| ||||| Sbjct 311 GAAGCTCTACACCAGCATCGAGGTGCAGGAGAAATTCGCCAACACCGGCAAGGCGTATCT 252 Query 3534 GGTGGGTCTGGCCGTCACCGATGACCCGGCAAGCCTCGGCAC 3575 || || ||||| |||||||| ||||| ||||| ||||| Sbjct 251 CGTCGGCCTGGCGGTCACCGACTCGCCGGCCAGCCTGGGCAC 210 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 107472573187880