Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414525.1_2020
15-10-27] 12,086 sequences; 74,456,230 total letters
Query= NC_022969.1
Length=76217
Score E
Sequences producing significant alignments: (Bits) Value
seq7712 221 6e-53
seq2623 152 3e-32
seq304 98.7 5e-16
seq9695 82.4 4e-11
>seq7712
Length=1425
Score = 221 bits (244), Expect = 6e-53
Identities = 451/663 (68%), Gaps = 23/663 (3%)
Strand=Plus/Plus
Query 66116 TCATTCCCACCGGCTCTATCGCTCTGGACGGCGCTCTGGGCATCGGGGGGTACCCGAGGG 66175
||||||| ||||| || | ||||| ||| ||||| ||||| || |||| ||
Sbjct 724 TCATTCCGACCGGTTCGCTGATGTTGGACATCGCACTGGGGATCGGCGGCCTGCCGAAGG 783
Query 66176 GCCGGGTGGTGGAAATCTACGGCCCAGAATCTTCAGGGAAGTCAACTCTGTGTCTCCACG 66235
|||| || |||||||||||||| || ||||| || || ||| | || || || || |
Sbjct 784 GCCGCGTCGTGGAAATCTACGGGCCGGAATCCTCGGGCAAGACCACCTTGACCCTGCAGG 843
Query 66236 CGGTGGC-CAATGCGCAGAAGGCCGGTGGCAACGCCGCCTACATCGACGCTGAGCACTCC 66294
| | || || ||| ||||| ||||||| ||| || | ||||||||| ||||| |
Sbjct 844 CCATTGCGCAGTGC-CAGAAATTGGGTGGCACCGCTGCGTTCATCGACGCCGAGCATGCG 902
Query 66295 CTGGACCCTGAGTACGCCAAGGC--GCTCGGTGTGGACCTCGACAACCTCGTGGTGGTTC 66352
|| ||||| ||||| ||| ||| || || | ||||| | || || | |
Sbjct 903 CTCGACCCGATCTACGCG--GGCAAGCTGGGCGTCAATGTCGACGATCTGCTGCTATCGC 960
Query 66353 AGCCGGACACTGGCGAGCAGGCCCTGGAGATCGTTGACCTCCTCGTCAAGTCTGGCGAGC 66412
|||||||||| || |||||||| ||||| |||| ||| | || || || ||||
Sbjct 961 AGCCGGACACCGGTGAGCAGGCGCTGGAAATCGCCGACATGCTGGTGCGCTC----GAGC 1016
Query 66413 T--GTCCAT--CGTCGTCGTTGACTCTGTGGCGGCCCTGGTGCCGCGCGCCGAGCTCGAA 66468
| ||| || ||| || | ||||| ||||| || ||| ||| || || |||||
Sbjct 1017 TCGGTCGATATCGTGGTGATCGACTCGGTGGCTGCACTGACGCCAAAGGCGGAAATCGAA 1076
Query 66469 GGCGACATCGGGGACAGTCACGTCGGCCTGCACGCGCGCCTCATGTCGCAGGCCATGCGC 66528
||||| || || ||| | || ||||| || || || ||| || || |||||
Sbjct 1077 GGCGAGATGGGCGACCAGCTGCCAGGTCTGCAGGCACGTCTGATGAGCCAAGCGCTGCGC 1136
Query 66529 AAGCTCACCGGCACCATCTCCAGCACCAACACGCTGACGCTCTGGGTCAACCAGTTGCGC 66588
||||| ||||| | |||| | ||||||| || | ||| ||||||||||||||
Sbjct 1137 AAGCTGACCGGTAACATCAAGCGTTCCAACACCTTGGTGGTCTTCATCAACCAGTTGCGC 1196
Query 66589 GAGAAGATCGGCAACGTG------GGCTACGGCCCGAATGAGACCACCACGGGCGGCAAG 66642
| ||||||||| | || || | ||||| | | ||||||| ||||| ||
Sbjct 1197 CACAAGATCGGCGTCATGATGCCGGGTCAGAGCCCGGAAGTGACCACC---GGCGGTAAC 1253
Query 66643 GCTTTGAGGTTCTACGCCTCAGTCCGCATGGATGTCCGTCGCATCGCCACCGAGAAGGAA 66702
|| |||| ||||||||||| || || |||| ||||||| |||| | | ||| ||
Sbjct 1254 GCGTTGAAATTCTACGCCTCGGTGCGTCTGGACATCCGTCGTATCGGCGCGATCAAGAAA 1313
Query 66703 GGCGATGAGGCTGTCGGCAACCGCACCCGGGTGAAGGTCGTCAAGAACAAGCTGGCCCCG 66762
|| || ||| ||||||||| || | | ||||| |||||||||||| |||| ||
Sbjct 1314 GGTGACGAGATCATCGGCAACCAGACTAAGATCAAGGTGGTCAAGAACAAGTTGGCGCCT 1373
Query 66763 CCG 66765
|||
Sbjct 1374 CCG 1376
>seq2623
Length=5434
Score = 152 bits (168), Expect = 3e-32
Identities = 236/335 (70%), Gaps = 9/335 (3%)
Strand=Plus/Minus
Query 66352 CAGCCGGACACTGGCGAGCAGGCCCTGGAGATCGTTGACCTCCTCGTCAAGTCTGGCGAG 66411
||||| ||||||||||| ||||| ||||| |||| ||| | || || || ||
Sbjct 339 CAGCCAGACACTGGCGAACAGGCGCTGGAAATCGCCGACATGCTGGTGCGTTCAGGTTCT 280
Query 66412 CTGTCCATCGTCGTCGTTGACTCTGTGGCGGCCCTGGTGCCGCGCGCCGAGCTCGAAGGC 66471
|| || || || ||||||||||| || || ||| ||||| || ||| | ||||||
Sbjct 279 GTGGATATTGTGGTGGTTGACTCTGTCGCCGCGCTGACTCCGCGTGCAGAGATTGAAGGC 220
Query 66472 GACATCGGGGACAGTCACGTCGGCCTGCACGCGCGCCTCATGTCGCAGGCCATGCGCAAG 66531
|| || || ||||| || | |||||||| |||||||| |||||||||||| |||| ||
Sbjct 219 GAAATGGGCGACAGCCATATGGGCCTGCAAGCGCGCCTGATGTCGCAGGCCTTGCGTAAA 160
Query 66532 CTCACCGGCACCATCTCCAGCACCAACACGCTGACGCTCTGGGTCAACCAGTTGCGCGAG 66591
|| || || | |||| | ||||| || ||| | ||| | |||||| | || |
Sbjct 159 CTGACTGGTAACATCAAGCGTACCAATACACTGGTGATCTTCATTAACCAGATCCGTATG 100
Query 66592 AAGATCGGCAACGTGGGCTACGG---CCCGAATGAGACCACCACGGGCGGCAAGGCTTTG 66648
|| |||||| | || | ||| |||| || || || || |||||||| || |
Sbjct 99 AAAATCGGCGTCATG---TTCGGTAACCCG---GAAACAACGACCGGCGGCAACGCGCTT 46
Query 66649 AGGTTCTACGCCTCAGTCCGCATGGATGTCCGTCG 66683
| ||||||||||| || ||| ||||| |||| ||
Sbjct 45 AAATTCTACGCCTCTGTGCGCCTGGATATCCGCCG 11
>seq304
Length=36179
Score = 98.7 bits (108), Expect = 5e-16
Identities = 188/273 (69%), Gaps = 8/273 (3%)
Strand=Plus/Plus
Query 66271 GCCTACATCGACGCTGAGCACTCCCTGGACCCTGAGTACGCCAAGGCGCTCGGTGTGGAC 66330
|||| || ||||| |||||| | | ||| | | |||||||||||| | ||||| |||
Sbjct 15169 GCCTTTATTGACGCGGAGCACGCGATTGACGCCCACTACGCCAAGGCGTTGGGTGTCGAC 15228
Query 66331 CTCGACAACCTCGTGGTGGTT--CAGCCGGACACTGGCGAGCAGGCCCTGGAGATCGTTG 66388
| | | ||| | || | ||||| ||| |||| || | || |||||||||| ||
Sbjct 15229 ATTG--ATGCTCTTTATGTCTCGCAGCCCGACTCTGGAGAAGAAGCGCTGGAGATCGCTG 15286
Query 66389 ACCTCCTCGTCAAGTCTGGCGAGCTGTC--CATCGTCGTCGTTGACTCTGTGGCGGCCCT 66446
|| || ||| ||| | |||| ||| | | ||||| | ||| ||| || |||||
Sbjct 15287 ACACACTGATCAGGTC--GGGAGCAGTCGACCTTGTCGTGCTAGACAGTGTAGCTGCCCT 15344
Query 66447 GGTGCCGCGCGCCGAGCTCGAAGGCGACATCGGGGACAGTCACGTCGGCCTGCACGCGCG 66506
||||| || || ||||| ||||| || || || ||| || | | ||||| || ||
Sbjct 15345 CGTGCCCCGAGCAGAGCTGGAAGGGGAAATGGGAGACCAGCAAATTGCTCTGCAGGCACG 15404
Query 66507 CCTCATGTCGCAGGCCATGCGCAAGCTCACCGG 66539
||| ||| || || |||||||||| || ||
Sbjct 15405 CCTAATGAGTCAAGCTCTGCGCAAGCTGACTGG 15437
>seq9695
Length=1156
Score = 82.4 bits (90), Expect = 4e-11
Identities = 132/187 (71%), Gaps = 2/187 (1%)
Strand=Plus/Minus
Query 66351 TCAGCCGGACACTGGCGAGCAGGCCCTGGAGATCGTTGACCTCCTCGTCAAGTC-TGGCG 66409
|||||||||| |||| |||||||| || ||||| || || || || | || ||| |
Sbjct 670 TCAGCCGGACTCTGGAGAGCAGGCACTTGAGATTGTAGAGACGCTGGT-ACGTAGTGGGG 612
Query 66410 AGCTGTCCATCGTCGTCGTTGACTCTGTGGCGGCCCTGGTGCCGCGCGCCGAGCTCGAAG 66469
|| | | || || || ||| ||||||||| || ||||| || ||||||||||
Sbjct 611 CAGTGGACTTTGTAGTAGTAGACAGTGTGGCGGCTCTTACTCCGCGAGCAGAGCTCGAAG 552
Query 66470 GCGACATCGGGGACAGTCACGTCGGCCTGCACGCGCGCCTCATGTCGCAGGCCATGCGCA 66529
| || || || ||||||||| | || || || || || || ||| ||||| | || |
Sbjct 551 GTGAAATGGGTGACAGTCACATGGGACTTCAGGCTCGACTTATGAGTCAGGCTCTACGAA 492
Query 66530 AGCTCAC 66536
|||| ||
Sbjct 491 AGCTTAC 485
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 243733693194988
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |